RNA–Protein interactions for RNA: ENST00000378526.8

LIG3-202, Transcript of DNA ligase 3, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene LIG3, Length 8,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-202ENST00000378526 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP8.69□□□□□ -1.023e-6■■■□□ 18.3
LIG3-202ENST00000378526 EIF2B4Q9UI10 523 aaKnown RBP8.69□□□□□ -1.02
LIG3-202ENST00000378526 TUBE1Q9UJT0 475 aa8.69□□□□□ -1.02
LIG3-202ENST00000378526 RPL36Q9Y3U8 105 aaKnown RBP8.69□□□□□ -1.02
LIG3-202ENST00000378526 SHOX2O60902 331 aaPredicted RBP8.69□□□□□ -1.02
LIG3-202ENST00000378526 SLC22A3O75751 556 aa8.69□□□□□ -1.02
LIG3-202ENST00000378526 DBIP07108 87 aaKnown RBP8.69□□□□□ -1.02
LIG3-202ENST00000378526 NUDT17P0C025 328 aa8.69□□□□□ -1.02
LIG3-202ENST00000378526 CAPN3P20807 821 aa8.69□□□□□ -1.02
LIG3-202ENST00000378526 CCNFP41002 786 aa8.69□□□□□ -1.02
LIG3-202ENST00000378526 GRIA2P42262 883 aa8.69□□□□□ -1.02
LIG3-202ENST00000378526 ILDR2Q71H61 639 aa8.69□□□□□ -1.02
LIG3-202ENST00000378526 SSX7Q7RTT5 188 aa8.69□□□□□ -1.02
LIG3-202ENST00000378526 KCNS2Q9ULS6 477 aa8.69□□□□□ -1.02
LIG3-202ENST00000378526 LRRC42Q9Y546 428 aa8.69□□□□□ -1.02
LIG3-202ENST00000378526 A8MXE2 369 aa8.69□□□□□ -1.02
LIG3-202ENST00000378526 OGTO15294 1046 aa8.69□□□□□ -1.02
LIG3-202ENST00000378526 TXNL1O43396 289 aa8.69□□□□□ -1.02
LIG3-202ENST00000378526 NRP2O60462 931 aa8.69□□□□□ -1.02
LIG3-202ENST00000378526 SLC19A2O60779 497 aa8.69□□□□□ -1.02
LIG3-202ENST00000378526 TOX4O94842 621 aa8.69□□□□□ -1.02
LIG3-202ENST00000378526 KELP23276 732 aa8.69□□□□□ -1.02
LIG3-202ENST00000378526 RENBPP51606 427 aa8.69□□□□□ -1.02
LIG3-202ENST00000378526 DGKQP52824 942 aa8.69□□□□□ -1.02
LIG3-202ENST00000378526 C1orf216Q8TAB5 229 aa8.69□□□□□ -1.02
LIG3-202ENST00000378526 HASPINQ8TF76 798 aa8.69□□□□□ -1.02
LIG3-202ENST00000378526 EAF2Q96CJ1 260 aaPredicted RBP8.69□□□□□ -1.02
LIG3-202ENST00000378526 MBOAT7Q96N66 472 aa8.69□□□□□ -1.02
LIG3-202ENST00000378526 ZNF436Q9C0F3 470 aaPredicted RBP8.69□□□□□ -1.02
LIG3-202ENST00000378526 SNTG1Q9NSN8 517 aa8.69□□□□□ -1.02
LIG3-202ENST00000378526 MTMR4Q9NYA4 1195 aa8.69□□□□□ -1.02
LIG3-202ENST00000378526 NUFIP1Q9UHK0 495 aaKnown RBP8.69□□□□□ -1.02
LIG3-202ENST00000378526 FAM237BA0A1B0GVD1 139 aa8.69□□□□□ -1.02
LIG3-202ENST00000378526 A0A1B0GVI7 797 aa8.69□□□□□ -1.02
LIG3-202ENST00000378526 SCGB1D2O95969 90 aa8.69□□□□□ -1.02
LIG3-202ENST00000378526 SPAM1P38567 509 aa8.69□□□□□ -1.02
LIG3-202ENST00000378526 ZNF135P52742 658 aaPredicted RBP8.69□□□□□ -1.02
LIG3-202ENST00000378526 AUHQ13825 339 aaKnown RBP8.69□□□□□ -1.02
LIG3-202ENST00000378526 ZNF404Q494X3 552 aa8.69□□□□□ -1.02
LIG3-202ENST00000378526 KANK2Q63ZY3 851 aa8.69□□□□□ -1.02
LIG3-202ENST00000378526 KCNV1Q6PIU1 500 aa8.69□□□□□ -1.02
LIG3-202ENST00000378526 PAPD5Q8NDF8 572 aaKnown RBP8.69□□□□□ -1.02
LIG3-202ENST00000378526 COPRSQ9NQ92 184 aa8.69□□□□□ -1.02
LIG3-202ENST00000378526 LRFN1Q9P244 771 aa8.69□□□□□ -1.02
LIG3-202ENST00000378526 COMMD3Q9UBI1 195 aa8.69□□□□□ -1.02
LIG3-202ENST00000378526 PCDHGB5Q9Y5G0 923 aa8.69□□□□□ -1.02
LIG3-202ENST00000378526 PCDHA11Q9Y5I1 949 aa8.69□□□□□ -1.02
LIG3-202ENST00000378526 KRBOX1C9JBD0 128 aa8.69□□□□□ -1.02
LIG3-202ENST00000378526 BTN3A1O00481 513 aa8.69□□□□□ -1.02
LIG3-202ENST00000378526 RFXANKO14593 260 aa8.69□□□□□ -1.02
LIG3-202ENST00000378526 PDYNP01213 254 aa8.69□□□□□ -1.02
LIG3-202ENST00000378526 OXCT1P55809 520 aa8.69□□□□□ -1.02
LIG3-202ENST00000378526 RAB8AP61006 207 aa8.69□□□□□ -1.02
LIG3-202ENST00000378526 DNASE1L3Q13609 305 aa8.69□□□□□ -1.02
LIG3-202ENST00000378526 GFOD2Q3B7J2 385 aa8.69□□□□□ -1.02
LIG3-202ENST00000378526 DNAJC10Q8IXB1 793 aa8.69□□□□□ -1.02
LIG3-202ENST00000378526 SLC35F3Q8IY50 421 aa8.69□□□□□ -1.02
LIG3-202ENST00000378526 GSTCDQ8NEC7 633 aa8.69□□□□□ -1.02
LIG3-202ENST00000378526 DDX1Q92499 740 aaKnown RBP8.69□□□□□ -1.02
LIG3-202ENST00000378526 MOAP1Q96BY2 351 aa8.69□□□□□ -1.02
LIG3-202ENST00000378526 DHRS1Q96LJ7 313 aa8.69□□□□□ -1.02
LIG3-202ENST00000378526 BTBD2Q9BX70 525 aa8.69□□□□□ -1.02
LIG3-202ENST00000378526 TUT1Q9H6E5 874 aaKnown RBP8.69□□□□□ -1.02
LIG3-202ENST00000378526 PAQR5Q9NXK6 330 aaPredicted RBP8.69□□□□□ -1.02
LIG3-202ENST00000378526 ZNF70Q9UC06 446 aaPredicted RBP8.69□□□□□ -1.02
LIG3-202ENST00000378526 PCDHA6Q9UN73 950 aa8.69□□□□□ -1.02
LIG3-202ENST00000378526 PCDHA8Q9Y5H6 950 aa8.69□□□□□ -1.02
LIG3-202ENST00000378526 C17orf113A0A1B0GUU1 675 aa8.68□□□□□ -1.02
LIG3-202ENST00000378526 F5H0A9 414 aaPredicted RBP8.68□□□□□ -1.02
LIG3-202ENST00000378526 ARHGEF15O94989 841 aa8.68□□□□□ -1.02
LIG3-202ENST00000378526 TPH1P17752 444 aa8.68□□□□□ -1.02
LIG3-202ENST00000378526 GNALP38405 381 aa8.68□□□□□ -1.02
LIG3-202ENST00000378526 TAS2R39P59534 338 aa8.68□□□□□ -1.02
LIG3-202ENST00000378526 SLC18A2Q05940 514 aa8.68□□□□□ -1.02
LIG3-202ENST00000378526 RAPSNQ13702 412 aa8.68□□□□□ -1.02
LIG3-202ENST00000378526 PRKD1Q15139 912 aaPredicted RBP8.68□□□□□ -1.02
LIG3-202ENST00000378526 TRAM1Q15629 374 aa8.68□□□□□ -1.02
LIG3-202ENST00000378526 QRICH1Q2TAL8 776 aa8.68□□□□□ -1.02
LIG3-202ENST00000378526 ZNF227Q86WZ6 799 aa8.68□□□□□ -1.02
LIG3-202ENST00000378526 TMEM126BQ8IUX1 230 aa8.68□□□□□ -1.02
LIG3-202ENST00000378526 PIAS4Q8N2W9 510 aaPredicted RBP8.68□□□□□ -1.02
LIG3-202ENST00000378526 PHTF2Q8N3S3 785 aa8.68□□□□□ -1.02
LIG3-202ENST00000378526 C11orf65Q8NCR3 313 aa8.68□□□□□ -1.02
LIG3-202ENST00000378526 SLC7A6OSQ96CW6 309 aaPredicted RBP8.68□□□□□ -1.02
LIG3-202ENST00000378526 KXD1Q9BQD3 176 aa8.68□□□□□ -1.02
LIG3-202ENST00000378526 C8orf33Q9H7E9 229 aaPredicted RBP8.68□□□□□ -1.02
LIG3-202ENST00000378526 ERVK-5Q9HDB9 667 aa8.68□□□□□ -1.02
LIG3-202ENST00000378526 WASF2Q9Y6W5 498 aa8.68□□□□□ -1.02
LIG3-202ENST00000378526 NOS1P29475 1434 aa8.68□□□□□ -1.02
LIG3-202ENST00000378526 TPP1O14773 563 aa8.68□□□□□ -1.02
LIG3-202ENST00000378526 FCER1AP12319 257 aa8.68□□□□□ -1.02
LIG3-202ENST00000378526 ETFAP13804 333 aa8.68□□□□□ -1.02
LIG3-202ENST00000378526 PHKG2P15735 406 aa8.68□□□□□ -1.02
LIG3-202ENST00000378526 MC2RQ01718 297 aa8.68□□□□□ -1.02
LIG3-202ENST00000378526 MERTKQ12866 999 aa8.68□□□□□ -1.02
LIG3-202ENST00000378526 LARS2Q15031 903 aaKnown RBP8.68□□□□□ -1.02
LIG3-202ENST00000378526 METTL21CQ5VZV1 264 aa8.68□□□□□ -1.02
LIG3-202ENST00000378526 GPAT2Q6NUI2 795 aa8.68□□□□□ -1.02
LIG3-202ENST00000378526 KCNIP4Q6PIL6 250 aa8.68□□□□□ -1.02
LIG3-202ENST00000378526 VSTM1Q6UX27 236 aa8.68□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 53.1 ms