RNA–Protein interactions for RNA: ENST00000374877.7

CCDC40-203, Transcript of coiled-coil domain containing 40, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CCDC40, Length 3,544 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-203ENST00000374877 MBTPS1Q14703 1052 aa11.02□□□□□ -0.65
CCDC40-203ENST00000374877 HABP4Q5JVS0 413 aaKnown RBP11.02□□□□□ -0.65
CCDC40-203ENST00000374877 SLC39A5Q6ZMH5 540 aa11.02□□□□□ -0.65
CCDC40-203ENST00000374877 ZNF513Q8N8E2 541 aaPredicted RBP11.02□□□□□ -0.65
CCDC40-203ENST00000374877 PNPT1Q8TCS8 783 aaKnown RBP11.02□□□□□ -0.65
CCDC40-203ENST00000374877 SGCDQ92629 289 aa11.02□□□□□ -0.65
CCDC40-203ENST00000374877 PABPC5Q96DU9 382 aaKnown RBP11.02□□□□□ -0.65
CCDC40-203ENST00000374877 BDH2Q9BUT1 245 aa11.02□□□□□ -0.65
CCDC40-203ENST00000374877 DGCR6LQ9BY27 220 aa11.02□□□□□ -0.65
CCDC40-203ENST00000374877 TRIM54Q9BYV2 358 aa11.02□□□□□ -0.65
CCDC40-203ENST00000374877 TUBB1Q9H4B7 451 aa11.02□□□□□ -0.65
CCDC40-203ENST00000374877 RAD21L1Q9H4I0 556 aa11.02□□□□□ -0.65
CCDC40-203ENST00000374877 SDR39U1Q9NRG7 319 aaPredicted RBP11.02□□□□□ -0.65
CCDC40-203ENST00000374877 SLAMF8Q9P0V8 285 aa11.02□□□□□ -0.65
CCDC40-203ENST00000374877 MARCH4Q9P2E8 410 aaPredicted RBP11.02□□□□□ -0.65
CCDC40-203ENST00000374877 PSME2Q9UL46 239 aa11.02□□□□□ -0.65
CCDC40-203ENST00000374877 ZNF232Q9UNY5 417 aa11.02□□□□□ -0.65
CCDC40-203ENST00000374877 TIMM22Q9Y584 194 aa11.02□□□□□ -0.65
CCDC40-203ENST00000374877 SLC30A1Q9Y6M5 507 aa11.02□□□□□ -0.65
CCDC40-203ENST00000374877 MYLKQ15746 1914 aa11.02□□□□□ -0.65
CCDC40-203ENST00000374877 TCRBV5S2A0A599 114 aa11.01□□□□□ -0.65
CCDC40-203ENST00000374877 SOBPA7XYQ1 873 aa11.01□□□□□ -0.65
CCDC40-203ENST00000374877 CPNE6O95741 557 aa11.01□□□□□ -0.65
CCDC40-203ENST00000374877 IL7RP16871 459 aa11.01□□□□□ -0.65
CCDC40-203ENST00000374877 ADARB1P78563 741 aaKnown RBP11.01□□□□□ -0.65
CCDC40-203ENST00000374877 PAGE3Q5JUK9 113 aa11.01□□□□□ -0.65
CCDC40-203ENST00000374877 PERM1Q5SV97 790 aa11.01□□□□□ -0.65
CCDC40-203ENST00000374877 BLOC1S3Q6QNY0 202 aa11.01□□□□□ -0.65
CCDC40-203ENST00000374877 SCIMPQ6UWF3 145 aa11.01□□□□□ -0.65
CCDC40-203ENST00000374877 USP51Q70EK9 711 aa11.01□□□□□ -0.65
CCDC40-203ENST00000374877 ITIH5Q86UX2 942 aa11.01□□□□□ -0.65
CCDC40-203ENST00000374877 KLHDC8BQ8IXV7 354 aa11.01□□□□□ -0.65
CCDC40-203ENST00000374877 RAB2BQ8WUD1 216 aa11.01□□□□□ -0.65
CCDC40-203ENST00000374877 BIRC7Q96CA5 298 aa11.01□□□□□ -0.65
CCDC40-203ENST00000374877 TEX37Q96LM6 180 aa11.01□□□□□ -0.65
CCDC40-203ENST00000374877 ZFP42Q96MM3 310 aa11.01□□□□□ -0.65
CCDC40-203ENST00000374877 ADAM2Q99965 735 aa11.01□□□□□ -0.65
CCDC40-203ENST00000374877 YTHDF1Q9BYJ9 559 aaKnown RBP11.01□□□□□ -0.65
CCDC40-203ENST00000374877 PALMDQ9NP74 551 aa11.01□□□□□ -0.65
CCDC40-203ENST00000374877 SEMA4BQ9NPR2 832 aaPredicted RBP11.01□□□□□ -0.65
CCDC40-203ENST00000374877 MAGED1Q9Y5V3 778 aaPredicted RBP11.01□□□□□ -0.65
CCDC40-203ENST00000374877 OAS3Q9Y6K5 1087 aaKnown RBP11.01□□□□□ -0.65
CCDC40-203ENST00000374877 PTGESO14684 152 aa11.01□□□□□ -0.65
CCDC40-203ENST00000374877 MOCS2O96007 188 aaPredicted RBP11.01□□□□□ -0.65
CCDC40-203ENST00000374877 JAK1P23458 1154 aa11.01□□□□□ -0.65
CCDC40-203ENST00000374877 PAX3P23760 479 aa11.01□□□□□ -0.65
CCDC40-203ENST00000374877 SERPINH1P50454 418 aaKnown RBP11.01□□□□□ -0.65
CCDC40-203ENST00000374877 ARSDP51689 593 aa11.01□□□□□ -0.65
CCDC40-203ENST00000374877 ZNF135P52742 658 aaPredicted RBP11.01□□□□□ -0.65
CCDC40-203ENST00000374877 FAM189BP81408 668 aa11.01□□□□□ -0.65
CCDC40-203ENST00000374877 IMPG1Q17R60 797 aa11.01□□□□□ -0.65
CCDC40-203ENST00000374877 AASDHQ4L235 1098 aaPredicted RBP11.01□□□□□ -0.65
CCDC40-203ENST00000374877 TIGD2Q4W5G0 525 aa11.01□□□□□ -0.65
CCDC40-203ENST00000374877 STK32CQ86UX6 486 aa11.01□□□□□ -0.65
CCDC40-203ENST00000374877 PHYKPLQ8IUZ5 450 aa11.01□□□□□ -0.65
CCDC40-203ENST00000374877 TAMM41Q96BW9 452 aa11.01□□□□□ -0.65
CCDC40-203ENST00000374877 NANOGQ9H9S0 305 aa11.01□□□□□ -0.65
CCDC40-203ENST00000374877 RIC8BQ9NVN3 520 aa11.01□□□□□ -0.65
CCDC40-203ENST00000374877 SEPT3Q9UH03 358 aa11.01□□□□□ -0.65
CCDC40-203ENST00000374877 TSC2P49815 1807 aa11.01□□□□□ -0.65
CCDC40-203ENST00000374877 EOMESO95936 686 aa11.01□□□□□ -0.65
CCDC40-203ENST00000374877 GJA8P48165 433 aa11.01□□□□□ -0.65
CCDC40-203ENST00000374877 ZNF33AQ06730 810 aa11.01□□□□□ -0.65
CCDC40-203ENST00000374877 AGMOQ6ZNB7 445 aa11.01□□□□□ -0.65
CCDC40-203ENST00000374877 LIMS2Q7Z4I7 341 aa11.01□□□□□ -0.65
CCDC40-203ENST00000374877 ZNF598Q86UK7 904 aaKnown RBP11.01□□□□□ -0.65
CCDC40-203ENST00000374877 CCDC117Q8IWD4 279 aaPredicted RBP11.01□□□□□ -0.65
CCDC40-203ENST00000374877 OR13J1Q8NGT2 312 aa11.01□□□□□ -0.65
CCDC40-203ENST00000374877 SENP8Q96LD8 212 aa11.01□□□□□ -0.65
CCDC40-203ENST00000374877 CCDC138Q96M89 665 aa11.01□□□□□ -0.65
CCDC40-203ENST00000374877 INTS7Q9NVH2 962 aaKnown RBP11.01□□□□□ -0.65
CCDC40-203ENST00000374877 MPP6Q9NZW5 540 aa11.01□□□□□ -0.65
CCDC40-203ENST00000374877 PDCD11Q14690 1871 aaKnown RBP11.01□□□□□ -0.65
CCDC40-203ENST00000374877 A0A1B0GTL3 188 aa11□□□□□ -0.65
CCDC40-203ENST00000374877 A0A1W2PP18 115 aa11□□□□□ -0.65
CCDC40-203ENST00000374877 TRIM64BA6NI03 449 aa11□□□□□ -0.65
CCDC40-203ENST00000374877 CCDC154A6NI56 674 aa11□□□□□ -0.65
CCDC40-203ENST00000374877 SEC14L2O76054 403 aa11□□□□□ -0.65
CCDC40-203ENST00000374877 MATN4O95460 622 aa11□□□□□ -0.65
CCDC40-203ENST00000374877 OPRL1P41146 370 aa11□□□□□ -0.65
CCDC40-203ENST00000374877 PIGFQ07326 219 aa11□□□□□ -0.65
CCDC40-203ENST00000374877 R3HCC1LQ7Z5L2 792 aaKnown RBP11□□□□□ -0.65
CCDC40-203ENST00000374877 BTLAQ7Z6A9 289 aa11□□□□□ -0.65
CCDC40-203ENST00000374877 RALGPS2Q86X27 583 aaPredicted RBP11□□□□□ -0.65
CCDC40-203ENST00000374877 NSMCE2Q96MF7 247 aa11□□□□□ -0.65
CCDC40-203ENST00000374877 CSF3RQ99062 836 aa11□□□□□ -0.65
CCDC40-203ENST00000374877 NT5MQ9NPB1 228 aa11□□□□□ -0.65
CCDC40-203ENST00000374877 KCTD3Q9Y597 815 aa11□□□□□ -0.65
CCDC40-203ENST00000374877 UMPSP11172 480 aa11□□□□□ -0.65
CCDC40-203ENST00000374877 CCR1P32246 355 aa11□□□□□ -0.65
CCDC40-203ENST00000374877 CD86P42081 329 aa11□□□□□ -0.65
CCDC40-203ENST00000374877 ARSFP54793 590 aa11□□□□□ -0.65
CCDC40-203ENST00000374877 FOXM1Q08050 763 aa11□□□□□ -0.65
CCDC40-203ENST00000374877 OR4D1Q15615 310 aa11□□□□□ -0.65
CCDC40-203ENST00000374877 SLC14A2Q15849 920 aa11□□□□□ -0.65
CCDC40-203ENST00000374877 KANK2Q63ZY3 851 aa11□□□□□ -0.65
CCDC40-203ENST00000374877 PIWIL3Q7Z3Z3 882 aaKnown RBP11□□□□□ -0.65
CCDC40-203ENST00000374877 KIAA2013Q8IYS2 634 aa11□□□□□ -0.65
CCDC40-203ENST00000374877 TSPYL2Q9H2G4 693 aaPredicted RBP11□□□□□ -0.65
CCDC40-203ENST00000374877 SUPT3HB4E1H0 165 aa11□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms