RNA–Protein interactions for RNA: ENST00000366942.3

USH2A-202, Transcript of usherin, humanhuman

TSL 1 (best) BASIC

Gene USH2A, Length 6,320 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-202ENST00000366942 OR52L1Q8NGH7 329 aa4.07□□□□□ -1.76
USH2A-202ENST00000366942 OR1J2Q8NGS2 313 aa4.07□□□□□ -1.76
USH2A-202ENST00000366942 NUS1Q96E22 293 aa4.07□□□□□ -1.76
USH2A-202ENST00000366942 FCRL2Q96LA5 508 aaPredicted RBP4.07□□□□□ -1.76
USH2A-202ENST00000366942 CNOT6LQ96LI5 555 aaKnown RBP4.07□□□□□ -1.76
USH2A-202ENST00000366942 DGAT2Q96PD7 388 aa4.07□□□□□ -1.76
USH2A-202ENST00000366942 SCHIP1Q9P0W5 487 aaPredicted RBP4.07□□□□□ -1.76
USH2A-202ENST00000366942 EIF2B4Q9UI10 523 aaKnown RBP4.07□□□□□ -1.76
USH2A-202ENST00000366942 PDE4DIPQ5VU43 2346 aa4.07□□□□□ -1.76
USH2A-202ENST00000366942 TRBV23OR9-2A0A075B6M9 112 aa4.07□□□□□ -1.76
USH2A-202ENST00000366942 C1orf232A0A0U1RR37 186 aa4.07□□□□□ -1.76
USH2A-202ENST00000366942 TTC24A2A3L6 582 aaPredicted RBP4.07□□□□□ -1.76
USH2A-202ENST00000366942 PI15O43692 258 aa4.07□□□□□ -1.76
USH2A-202ENST00000366942 SLC22A3O75751 556 aa4.07□□□□□ -1.76
USH2A-202ENST00000366942 FHP07954 510 aa4.07□□□□□ -1.76
USH2A-202ENST00000366942 SKILP12757 684 aa4.07□□□□□ -1.76
USH2A-202ENST00000366942 C4BPBP20851 252 aa4.07□□□□□ -1.76
USH2A-202ENST00000366942 WDR5P61964 334 aaKnown RBP4.07□□□□□ -1.76
USH2A-202ENST00000366942 RPL19P84098 196 aaKnown RBP4.07□□□□□ -1.76
USH2A-202ENST00000366942 ZNF155Q12901 538 aaPredicted RBP4.07□□□□□ -1.76
USH2A-202ENST00000366942 UBAP2LQ14157 1087 aaKnown RBP4.07□□□□□ -1.76
USH2A-202ENST00000366942 ELAVL3Q14576 367 aaKnown RBP4.07□□□□□ -1.76
USH2A-202ENST00000366942 USP10Q14694 798 aaKnown RBP4.07□□□□□ -1.76
USH2A-202ENST00000366942 OLFML2AQ68BL7 652 aa4.07□□□□□ -1.76
USH2A-202ENST00000366942 WDR53Q7Z5U6 358 aaPredicted RBP4.07□□□□□ -1.76
USH2A-202ENST00000366942 FBXO15Q8NCQ5 510 aaPredicted RBP4.07□□□□□ -1.76
USH2A-202ENST00000366942 OR9K2Q8NGE7 335 aa4.07□□□□□ -1.76
USH2A-202ENST00000366942 OR6N1Q8NGY5 312 aa4.07□□□□□ -1.76
USH2A-202ENST00000366942 OR2AJ1Q8NGZ0 328 aa4.07□□□□□ -1.76
USH2A-202ENST00000366942 OR8K5Q8NH50 307 aa4.07□□□□□ -1.76
USH2A-202ENST00000366942 WDR60Q8WVS4 1066 aa4.07□□□□□ -1.76
USH2A-202ENST00000366942 MYLPFQ96A32 169 aa4.07□□□□□ -1.76
USH2A-202ENST00000366942 PSKH2Q96QS6 385 aa4.07□□□□□ -1.76
USH2A-202ENST00000366942 ERP44Q9BS26 406 aa4.07□□□□□ -1.76
USH2A-202ENST00000366942 TM6SF2Q9BZW4 377 aa4.07□□□□□ -1.76
USH2A-202ENST00000366942 TRIM31Q9BZY9 425 aa4.07□□□□□ -1.76
USH2A-202ENST00000366942 MAGEH1Q9H213 219 aa4.07□□□□□ -1.76
USH2A-202ENST00000366942 EBF3Q9H4W6 596 aa4.07□□□□□ -1.76
USH2A-202ENST00000366942 RERGLQ9H628 205 aa4.07□□□□□ -1.76
USH2A-202ENST00000366942 KIAA1468Q9P260 1216 aa4.07□□□□□ -1.76
USH2A-202ENST00000366942 RNF112Q9ULX5 631 aa4.07□□□□□ -1.76
USH2A-202ENST00000366942 POFUT2Q9Y2G5 429 aa4.07□□□□□ -1.76
USH2A-202ENST00000366942 TAF6LQ9Y6J9 622 aa4.07□□□□□ -1.76
USH2A-202ENST00000366942 ESYT3A0FGR9 886 aa4.07□□□□□ -1.76
USH2A-202ENST00000366942 CD3EAPO15446 510 aaKnown RBP4.07□□□□□ -1.76
USH2A-202ENST00000366942 MEFVO15553 781 aaPredicted RBP4.07□□□□□ -1.76
USH2A-202ENST00000366942 KIF1CO43896 1103 aaKnown RBP4.07□□□□□ -1.76
USH2A-202ENST00000366942 CYP4B1P13584 511 aa4.07□□□□□ -1.76
USH2A-202ENST00000366942 SYT1P21579 422 aa4.07□□□□□ -1.76
USH2A-202ENST00000366942 NT5EP21589 574 aa4.07□□□□□ -1.76
USH2A-202ENST00000366942 WARSP23381 471 aaKnown RBP4.07□□□□□ -1.76
USH2A-202ENST00000366942 EPHA3P29320 983 aa4.07□□□□□ -1.76
USH2A-202ENST00000366942 RFC1P35251 1148 aaPredicted RBP4.07□□□□□ -1.76
USH2A-202ENST00000366942 SLC1A3P43003 542 aa4.07□□□□□ -1.76
USH2A-202ENST00000366942 CSTF3Q12996 717 aaKnown RBP4.07□□□□□ -1.76
USH2A-202ENST00000366942 PROSER3Q2NL68 480 aa4.07□□□□□ -1.76
USH2A-202ENST00000366942 PARP15Q460N3 678 aa4.07□□□□□ -1.76
USH2A-202ENST00000366942 MROH9Q5TGP6 573 aa4.07□□□□□ -1.76
USH2A-202ENST00000366942 AP1ARQ63HQ0 302 aa4.07□□□□□ -1.76
USH2A-202ENST00000366942 TYW1BQ6NUM6 668 aa4.07□□□□□ -1.76
USH2A-202ENST00000366942 FBXO42Q6P3S6 717 aa4.07□□□□□ -1.76
USH2A-202ENST00000366942 CHST15Q7LFX5 561 aaPredicted RBP4.07□□□□□ -1.76
USH2A-202ENST00000366942 SLC47A2Q86VL8 602 aa4.07□□□□□ -1.76
USH2A-202ENST00000366942 GRAMD2AQ8IUY3 354 aa4.07□□□□□ -1.76
USH2A-202ENST00000366942 ZNF687Q8N1G0 1237 aa4.07□□□□□ -1.76
USH2A-202ENST00000366942 CACTIN-AS1Q8N1I8 211 aa4.07□□□□□ -1.76
USH2A-202ENST00000366942 MINDY1Q8N5J2 469 aa4.07□□□□□ -1.76
USH2A-202ENST00000366942 KIAA0895Q8NCT3 520 aa4.07□□□□□ -1.76
USH2A-202ENST00000366942 ZNF540Q8NDQ6 660 aa4.07□□□□□ -1.76
USH2A-202ENST00000366942 C22orf15Q8WYQ4 148 aa4.07□□□□□ -1.76
USH2A-202ENST00000366942 EFHD2Q96C19 240 aaPredicted RBP4.07□□□□□ -1.76
USH2A-202ENST00000366942 BTBD6Q96KE9 485 aa4.07□□□□□ -1.76
USH2A-202ENST00000366942 CRB3Q9BUF7 120 aa4.07□□□□□ -1.76
USH2A-202ENST00000366942 SEMA6CQ9H3T2 930 aa4.07□□□□□ -1.76
USH2A-202ENST00000366942 LRRC40Q9H9A6 602 aa4.07□□□□□ -1.76
USH2A-202ENST00000366942 TMEM27Q9HBJ8 222 aa4.07□□□□□ -1.76
USH2A-202ENST00000366942 GPRC5BQ9NZH0 403 aa4.07□□□□□ -1.76
USH2A-202ENST00000366942 ACSL5Q9ULC5 683 aa4.07□□□□□ -1.76
USH2A-202ENST00000366942 GABRQQ9UN88 632 aa4.07□□□□□ -1.76
USH2A-202ENST00000366942 PTRH2Q9Y3E5 179 aaKnown RBP4.07□□□□□ -1.76
USH2A-202ENST00000366942 N6AMT1Q9Y5N5 214 aa4.07□□□□□ -1.76
USH2A-202ENST00000366942 WIF1Q9Y5W5 379 aa4.07□□□□□ -1.76
USH2A-202ENST00000366942 ATRXP46100 2492 aa4.07□□□□□ -1.76
USH2A-202ENST00000366942 MADDQ8WXG6 1647 aa4.07□□□□□ -1.76
USH2A-202ENST00000366942 FUOMA2VDF0 154 aa4.07□□□□□ -1.76
USH2A-202ENST00000366942 CDC7O00311 574 aa4.07□□□□□ -1.76
USH2A-202ENST00000366942 ENPP3O14638 875 aa4.07□□□□□ -1.76
USH2A-202ENST00000366942 MAFO75444 373 aaPredicted RBP4.07□□□□□ -1.76
USH2A-202ENST00000366942 STX11O75558 287 aa4.07□□□□□ -1.76
USH2A-202ENST00000366942 SERPINI2O75830 405 aa4.07□□□□□ -1.76
USH2A-202ENST00000366942 PDE5AO76074 875 aa4.07□□□□□ -1.76
USH2A-202ENST00000366942 PDE9AO76083 593 aa4.07□□□□□ -1.76
USH2A-202ENST00000366942 APOC1P02654 83 aa4.07□□□□□ -1.76
USH2A-202ENST00000366942 SRPRAP08240 638 aaKnown RBP4.07□□□□□ -1.76
USH2A-202ENST00000366942 F3P13726 295 aa4.07□□□□□ -1.76
USH2A-202ENST00000366942 RPS3P23396 243 aaKnown RBP eCLIP4.07□□□□□ -1.76
USH2A-202ENST00000366942 SERPINB1P30740 379 aa4.07□□□□□ -1.76
USH2A-202ENST00000366942 GGCXP38435 758 aa4.07□□□□□ -1.76
USH2A-202ENST00000366942 SKIV2L2P42285 1042 aaKnown RBP4.07□□□□□ -1.76
USH2A-202ENST00000366942 MAPKAPK2P49137 400 aa4.07□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 49.5 ms