RNA–Protein interactions for RNA: ENST00000359984.12

CLN3-205, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 1,876 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-205ENST00000359984 PDGFBP01127 241 aaPredicted RBP19.7■□□□□ 0.74
CLN3-205ENST00000359984 ESR1P03372 595 aa19.7■□□□□ 0.74
CLN3-205ENST00000359984 RPS3P23396 243 aaKnown RBP eCLIP19.7■□□□□ 0.744e-6■■□□□ 12.9
CLN3-205ENST00000359984 GPR1P46091 355 aa19.7■□□□□ 0.74
CLN3-205ENST00000359984 SLC12A2P55011 1212 aa19.7■□□□□ 0.74
CLN3-205ENST00000359984 RAB10P61026 200 aa19.7■□□□□ 0.74
CLN3-205ENST00000359984 PPP2CBP62714 309 aa19.7■□□□□ 0.74
CLN3-205ENST00000359984 PPP2CAP67775 309 aa19.7■□□□□ 0.74
CLN3-205ENST00000359984 ZNF460Q14592 562 aa19.7■□□□□ 0.74
CLN3-205ENST00000359984 TJAP1Q5JTD0 557 aa19.7■□□□□ 0.74
CLN3-205ENST00000359984 CLDN19Q8N6F1 224 aa19.7■□□□□ 0.74
CLN3-205ENST00000359984 PLA2G15Q8NCC3 412 aa19.7■□□□□ 0.74
CLN3-205ENST00000359984 GDAP1Q8TB36 358 aa19.7■□□□□ 0.74
CLN3-205ENST00000359984 SLC17A9Q9BYT1 436 aa19.7■□□□□ 0.74
CLN3-205ENST00000359984 SLC13A1Q9BZW2 595 aa19.7■□□□□ 0.74
CLN3-205ENST00000359984 CLPBQ9H078 707 aa19.7■□□□□ 0.74
CLN3-205ENST00000359984 VPS11Q9H270 941 aa19.7■□□□□ 0.74
CLN3-205ENST00000359984 SGK2Q9HBY8 427 aa19.7■□□□□ 0.74
CLN3-205ENST00000359984 MED16Q9Y2X0 877 aa19.7■□□□□ 0.74
CLN3-205ENST00000359984 PLXNB3Q9ULL4 1909 aa19.7■□□□□ 0.74
CLN3-205ENST00000359984 TRPM6Q9BX84 2022 aa19.69■□□□□ 0.74
CLN3-205ENST00000359984 PRPF4O43172 522 aaKnown RBP eCLIP19.69■□□□□ 0.74
CLN3-205ENST00000359984 MPOP05164 745 aa19.69■□□□□ 0.74
CLN3-205ENST00000359984 FDXRP22570 491 aa19.69■□□□□ 0.74
CLN3-205ENST00000359984 SGCGQ13326 291 aa19.69■□□□□ 0.74
CLN3-205ENST00000359984 MAP7D1Q3KQU3 841 aa19.69■□□□□ 0.74
CLN3-205ENST00000359984 KHDC1Q4VXA5 237 aaKnown RBP19.69■□□□□ 0.74
CLN3-205ENST00000359984 RAPH1Q70E73 1250 aa19.69■□□□□ 0.74
CLN3-205ENST00000359984 DDHD1Q8NEL9 900 aa19.69■□□□□ 0.74
CLN3-205ENST00000359984 OR2T34Q8NGX1 318 aa19.69■□□□□ 0.74
CLN3-205ENST00000359984 APOPT1Q96IL0 206 aa19.69■□□□□ 0.74
CLN3-205ENST00000359984 CYP8B1Q9UNU6 501 aa19.69■□□□□ 0.74
CLN3-205ENST00000359984 PCDHB1Q9Y5F3 818 aa19.69■□□□□ 0.74
CLN3-205ENST00000359984 INPP4BO15327 924 aa19.69■□□□□ 0.74
CLN3-205ENST00000359984 MTX2O75431 263 aa19.69■□□□□ 0.74
CLN3-205ENST00000359984 RHOBTB1O94844 696 aa19.69■□□□□ 0.74
CLN3-205ENST00000359984 SLC25A14O95258 325 aaPredicted RBP19.69■□□□□ 0.74
CLN3-205ENST00000359984 APBB3O95704 486 aa19.69■□□□□ 0.74
CLN3-205ENST00000359984 SLC35E2BP0CK96 405 aa19.69■□□□□ 0.74
CLN3-205ENST00000359984 CRABP2P29373 138 aa19.69■□□□□ 0.74
CLN3-205ENST00000359984 MAT2AP31153 395 aaKnown RBP19.69■□□□□ 0.74
CLN3-205ENST00000359984 NSG1P42857 185 aa19.69■□□□□ 0.74
CLN3-205ENST00000359984 ATP1A2P50993 1020 aa19.69■□□□□ 0.74
CLN3-205ENST00000359984 LRRC14Q15048 493 aa19.69■□□□□ 0.74
CLN3-205ENST00000359984 ZNF648Q5T619 568 aaPredicted RBP19.69■□□□□ 0.74
CLN3-205ENST00000359984 CWF19L1Q69YN2 538 aaKnown RBP19.69■□□□□ 0.74
CLN3-205ENST00000359984 PNCKQ6P2M8 343 aa19.69■□□□□ 0.74
CLN3-205ENST00000359984 KDM7AQ6ZMT4 941 aa19.69■□□□□ 0.74
CLN3-205ENST00000359984 CDHR3Q6ZTQ4 885 aa19.69■□□□□ 0.74
CLN3-205ENST00000359984 PIM3Q86V86 326 aa19.69■□□□□ 0.74
CLN3-205ENST00000359984 MDM1Q8TC05 714 aa19.69■□□□□ 0.74
CLN3-205ENST00000359984 TSPAN17Q96FV3 270 aa19.69■□□□□ 0.74
CLN3-205ENST00000359984 MBNL1Q9NR56 388 aaKnown RBP19.69■□□□□ 0.74
CLN3-205ENST00000359984 MKS1Q9NXB0 559 aa19.69■□□□□ 0.74
CLN3-205ENST00000359984 TLK1Q9UKI8 766 aa19.69■□□□□ 0.74
CLN3-205ENST00000359984 SMG5Q9UPR3 1016 aaKnown RBP19.69■□□□□ 0.74
CLN3-205ENST00000359984 COMMD10Q9Y6G5 202 aa19.69■□□□□ 0.74
CLN3-205ENST00000359984 VCANP13611 3396 aa19.69■□□□□ 0.74
CLN3-205ENST00000359984 LRRC72A6NJI9 287 aa19.68■□□□□ 0.74
CLN3-205ENST00000359984 COPEO14579 308 aa19.68■□□□□ 0.74
CLN3-205ENST00000359984 NIPSNAP2O75323 286 aa19.68■□□□□ 0.74
CLN3-205ENST00000359984 TOP3BO95985 862 aaKnown RBP19.68■□□□□ 0.74
CLN3-205ENST00000359984 PCCBP05166 539 aa19.68■□□□□ 0.74
CLN3-205ENST00000359984 RPA3P35244 121 aaPredicted RBP19.68■□□□□ 0.74
CLN3-205ENST00000359984 LDLRAP1Q5SW96 308 aa19.68■□□□□ 0.74
CLN3-205ENST00000359984 ZNF771Q7L3S4 317 aaPredicted RBP19.68■□□□□ 0.74
CLN3-205ENST00000359984 TP53I13Q8NBR0 393 aaPredicted RBP19.68■□□□□ 0.74
CLN3-205ENST00000359984 FAM136AQ96C01 138 aa19.68■□□□□ 0.74
CLN3-205ENST00000359984 CABS1Q96KC9 395 aa19.68■□□□□ 0.74
CLN3-205ENST00000359984 TPSD1Q9BZJ3 242 aa19.68■□□□□ 0.74
CLN3-205ENST00000359984 DLGAP2Q9P1A6 1054 aa19.68■□□□□ 0.74
CLN3-205ENST00000359984 GNPTGQ9UJJ9 305 aa19.68■□□□□ 0.74
CLN3-205ENST00000359984 IQCF5A8MTL0 148 aa19.67■□□□□ 0.74
CLN3-205ENST00000359984 PI15O43692 258 aa19.67■□□□□ 0.74
CLN3-205ENST00000359984 SEMA4FO95754 770 aa19.67■□□□□ 0.74
CLN3-205ENST00000359984 AKT1P31749 480 aa19.67■□□□□ 0.74
CLN3-205ENST00000359984 PXNP49023 591 aaPredicted RBP19.67■□□□□ 0.74
CLN3-205ENST00000359984 IRF9Q00978 393 aa19.67■□□□□ 0.74
CLN3-205ENST00000359984 IRF4Q15306 451 aa19.67■□□□□ 0.74
CLN3-205ENST00000359984 TAF1BQ53T94 588 aaPredicted RBP19.67■□□□□ 0.74
CLN3-205ENST00000359984 PTRHD1Q6GMV3 140 aaKnown RBP19.67■□□□□ 0.74
CLN3-205ENST00000359984 MACC1Q6ZN28 852 aa19.67■□□□□ 0.74
CLN3-205ENST00000359984 TRIM69Q86WT6 500 aa19.67■□□□□ 0.74
CLN3-205ENST00000359984 ARFGAP2Q8N6H7 521 aa19.67■□□□□ 0.74
CLN3-205ENST00000359984 CENPTQ96BT3 561 aa19.67■□□□□ 0.74
CLN3-205ENST00000359984 DCUN1D1Q96GG9 259 aa19.67■□□□□ 0.74
CLN3-205ENST00000359984 TOE1Q96GM8 510 aaKnown RBP19.67■□□□□ 0.74
CLN3-205ENST00000359984 C12orf65Q9H3J6 166 aaKnown RBP19.67■□□□□ 0.74
CLN3-205ENST00000359984 TAS2R13Q9NYV9 303 aa19.67■□□□□ 0.74
CLN3-205ENST00000359984 GALPQ9UBC7 116 aa19.67■□□□□ 0.74
CLN3-205ENST00000359984 MBD1Q9UIS9 605 aaPredicted RBP19.67■□□□□ 0.74
CLN3-205ENST00000359984 C10orf142B7Z368 130 aa19.67■□□□□ 0.74
CLN3-205ENST00000359984 RAD51BO15315 384 aa19.67■□□□□ 0.74
CLN3-205ENST00000359984 SLC31A1O15431 190 aa19.67■□□□□ 0.74
CLN3-205ENST00000359984 DCXO43602 365 aa19.67■□□□□ 0.74
CLN3-205ENST00000359984 DNAJC6O75061 913 aa19.67■□□□□ 0.74
CLN3-205ENST00000359984 WISP3O95389 354 aaPredicted RBP19.67■□□□□ 0.74
CLN3-205ENST00000359984 ATP1B2P14415 290 aaPredicted RBP19.67■□□□□ 0.74
CLN3-205ENST00000359984 CRHR1P34998 444 aa19.67■□□□□ 0.74
CLN3-205ENST00000359984 CXCL12P48061 93 aa19.67■□□□□ 0.74
Retrieved 100 of 20,778 RNA–protein pairs in 72.3 ms