RNA–Protein interactions for RNA: ENST00000359902.2

CCDC88B-203, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 2,326 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-203ENST00000359902 IQCF5A8MTL0 148 aa20.64■□□□□ 0.89
CCDC88B-203ENST00000359902 MLYCDO95822 493 aa20.64■□□□□ 0.89
CCDC88B-203ENST00000359902 SLC7A1P30825 629 aa20.64■□□□□ 0.89
CCDC88B-203ENST00000359902 ZXDBP98169 803 aa20.64■□□□□ 0.89
CCDC88B-203ENST00000359902 BLOC1S3Q6QNY0 202 aa20.64■□□□□ 0.89
CCDC88B-203ENST00000359902 WFDC5Q8TCV5 224 aa20.64■□□□□ 0.89
CCDC88B-203ENST00000359902 NUSAP1Q9BXS6 441 aaKnown RBP20.64■□□□□ 0.89
CCDC88B-203ENST00000359902 SARS2Q9NP81 518 aaKnown RBP20.64■□□□□ 0.89
CCDC88B-203ENST00000359902 ABCD2Q9UBJ2 740 aa20.64■□□□□ 0.89
CCDC88B-203ENST00000359902 CNOT11Q9UKZ1 510 aaKnown RBP20.64■□□□□ 0.89
CCDC88B-203ENST00000359902 PKP3Q9Y446 797 aa20.64■□□□□ 0.89
CCDC88B-203ENST00000359902 ZNF711Q9Y462 761 aa20.64■□□□□ 0.89
CCDC88B-203ENST00000359902 E5RI56 91 aa20.63■□□□□ 0.89
CCDC88B-203ENST00000359902 NME4O00746 187 aa20.63■□□□□ 0.89
CCDC88B-203ENST00000359902 ANGPT2O15123 496 aa20.63■□□□□ 0.89
CCDC88B-203ENST00000359902 LATS1O95835 1130 aa20.63■□□□□ 0.89
CCDC88B-203ENST00000359902 UROSP10746 265 aa20.63■□□□□ 0.89
CCDC88B-203ENST00000359902 ZNF26P17031 533 aaPredicted RBP20.63■□□□□ 0.89
CCDC88B-203ENST00000359902 CSKP41240 450 aa20.63■□□□□ 0.89
CCDC88B-203ENST00000359902 CLCN7P51798 805 aa20.63■□□□□ 0.89
CCDC88B-203ENST00000359902 PABPC1LQ4VXU2 614 aaKnown RBP20.63■□□□□ 0.89
CCDC88B-203ENST00000359902 SPATA19Q7Z5L4 167 aa20.63■□□□□ 0.89
CCDC88B-203ENST00000359902 DHFR2Q86XF0 187 aa20.63■□□□□ 0.89
CCDC88B-203ENST00000359902 MINDY1Q8N5J2 469 aa20.63■□□□□ 0.89
CCDC88B-203ENST00000359902 LRTOMTQ8WZ04 291 aa20.63■□□□□ 0.89
CCDC88B-203ENST00000359902 SLC24A3Q9HC58 644 aa20.63■□□□□ 0.89
CCDC88B-203ENST00000359902 MAGEE1Q9HCI5 957 aa20.63■□□□□ 0.89
CCDC88B-203ENST00000359902 CD274Q9NZQ7 290 aa20.63■□□□□ 0.89
CCDC88B-203ENST00000359902 DNMT3BQ9UBC3 853 aaKnown RBP20.63■□□□□ 0.89
CCDC88B-203ENST00000359902 K7ERQ8 282 aa20.62■□□□□ 0.89
CCDC88B-203ENST00000359902 GFRA2O00451 464 aa20.62■□□□□ 0.89
CCDC88B-203ENST00000359902 E2F3O00716 465 aa20.62■□□□□ 0.89
CCDC88B-203ENST00000359902 PRRG1O14668 218 aa20.62■□□□□ 0.89
CCDC88B-203ENST00000359902 CTPS1P17812 591 aa20.62■□□□□ 0.89
CCDC88B-203ENST00000359902 HMGCLP35914 325 aa20.62■□□□□ 0.89
CCDC88B-203ENST00000359902 GRIA2P42262 883 aa20.62■□□□□ 0.89
CCDC88B-203ENST00000359902 CDKL1Q00532 357 aa20.62■□□□□ 0.89
CCDC88B-203ENST00000359902 CACNG1Q06432 222 aa20.62■□□□□ 0.89
CCDC88B-203ENST00000359902 XKR7Q5GH72 579 aa20.62■□□□□ 0.89
CCDC88B-203ENST00000359902 LYSMD3Q7Z3D4 306 aa20.62■□□□□ 0.89
CCDC88B-203ENST00000359902 HJURPQ8NCD3 748 aaPredicted RBP20.62■□□□□ 0.89
CCDC88B-203ENST00000359902 OR56A4Q8NGH8 313 aa20.62■□□□□ 0.89
CCDC88B-203ENST00000359902 PLEKHG4BQ96PX9 1271 aa20.62■□□□□ 0.89
CCDC88B-203ENST00000359902 GPR63Q9BZJ6 419 aa20.62■□□□□ 0.89
CCDC88B-203ENST00000359902 TMCO1Q9UM00 188 aa20.62■□□□□ 0.89
CCDC88B-203ENST00000359902 PCDHGB4Q9UN71 923 aa20.62■□□□□ 0.89
CCDC88B-203ENST00000359902 PCDHGB5Q9Y5G0 923 aa20.62■□□□□ 0.89
CCDC88B-203ENST00000359902 FXYD1O00168 92 aa20.62■□□□□ 0.89
CCDC88B-203ENST00000359902 KIF3CO14782 793 aa20.62■□□□□ 0.89
CCDC88B-203ENST00000359902 SNX2O60749 519 aa20.62■□□□□ 0.89
CCDC88B-203ENST00000359902 CYBBP04839 570 aa20.62■□□□□ 0.89
CCDC88B-203ENST00000359902 ALPIP09923 528 aa20.62■□□□□ 0.89
CCDC88B-203ENST00000359902 HSPA8P11142 646 aaKnown RBP20.62■□□□□ 0.89
CCDC88B-203ENST00000359902 ATN1P54259 1190 aaPredicted RBP20.62■□□□□ 0.89
CCDC88B-203ENST00000359902 IRX1P78414 480 aaPredicted RBP20.62■□□□□ 0.89
CCDC88B-203ENST00000359902 RBBP7Q16576 425 aa20.62■□□□□ 0.89
CCDC88B-203ENST00000359902 MAP7D1Q3KQU3 841 aa20.62■□□□□ 0.89
CCDC88B-203ENST00000359902 LIN52Q52LA3 116 aa20.62■□□□□ 0.89
CCDC88B-203ENST00000359902 PRMT9Q6P2P2 845 aa20.62■□□□□ 0.89
CCDC88B-203ENST00000359902 SLC15A3Q8IY34 581 aa20.62■□□□□ 0.89
CCDC88B-203ENST00000359902 STK40Q8N2I9 435 aa20.62■□□□□ 0.89
CCDC88B-203ENST00000359902 SLC45A3Q96JT2 553 aa20.62■□□□□ 0.89
CCDC88B-203ENST00000359902 ACOX2Q99424 681 aa20.62■□□□□ 0.89
CCDC88B-203ENST00000359902 SEMA6AQ9H2E6 1030 aa20.62■□□□□ 0.89
CCDC88B-203ENST00000359902 ZNF334Q9HCZ1 680 aaPredicted RBP20.62■□□□□ 0.89
CCDC88B-203ENST00000359902 EIF2B4Q9UI10 523 aaKnown RBP20.62■□□□□ 0.89
CCDC88B-203ENST00000359902 ENO4A6NNW6 628 aa20.61■□□□□ 0.89
CCDC88B-203ENST00000359902 MYCP01106 439 aaPredicted RBP20.61■□□□□ 0.89
CCDC88B-203ENST00000359902 HSPA13P48723 471 aa20.61■□□□□ 0.89
CCDC88B-203ENST00000359902 RAB33AQ14088 237 aa20.61■□□□□ 0.89
CCDC88B-203ENST00000359902 TGFBIQ15582 683 aa20.61■□□□□ 0.89
CCDC88B-203ENST00000359902 SPOUT1Q5T280 376 aaKnown RBP20.61■□□□□ 0.89
CCDC88B-203ENST00000359902 C6orf52Q5T4I8 152 aa20.61■□□□□ 0.89
CCDC88B-203ENST00000359902 SCIMPQ6UWF3 145 aa20.61■□□□□ 0.89
CCDC88B-203ENST00000359902 EFL1Q7Z2Z2 1120 aaKnown RBP20.61■□□□□ 0.89
CCDC88B-203ENST00000359902 ARL14EPQ8N8R7 260 aaPredicted RBP20.61■□□□□ 0.89
CCDC88B-203ENST00000359902 PIH1D2Q8WWB5 315 aa20.61■□□□□ 0.89
CCDC88B-203ENST00000359902 EME1Q96AY2 570 aa20.61■□□□□ 0.89
CCDC88B-203ENST00000359902 UHRF1Q96T88 793 aaPredicted RBP20.61■□□□□ 0.89
CCDC88B-203ENST00000359902 DHRS7Q9Y394 339 aa20.61■□□□□ 0.89
CCDC88B-203ENST00000359902 SLC30A1Q9Y6M5 507 aa20.61■□□□□ 0.89
CCDC88B-203ENST00000359902 MICAL3Q7RTP6 2002 aa20.61■□□□□ 0.89
CCDC88B-203ENST00000359902 CSPG5O95196 566 aa20.61■□□□□ 0.89
CCDC88B-203ENST00000359902 PGLSO95336 258 aa20.61■□□□□ 0.89
CCDC88B-203ENST00000359902 FESP07332 822 aa20.61■□□□□ 0.89
CCDC88B-203ENST00000359902 MRPL19P49406 292 aaKnown RBP20.61■□□□□ 0.89
CCDC88B-203ENST00000359902 YBX1P67809 324 aaKnown RBP20.61■□□□□ 0.89
CCDC88B-203ENST00000359902 ARMC12Q5T9G4 340 aa20.61■□□□□ 0.89
CCDC88B-203ENST00000359902 Q6ZNB5 142 aa20.61■□□□□ 0.89
CCDC88B-203ENST00000359902 CAMK1DQ8IU85 385 aa20.61■□□□□ 0.89
CCDC88B-203ENST00000359902 OR2T11Q8NH01 316 aa20.61■□□□□ 0.89
CCDC88B-203ENST00000359902 BHMTQ93088 406 aa20.61■□□□□ 0.89
CCDC88B-203ENST00000359902 PBXIP1Q96AQ6 731 aa20.61■□□□□ 0.89
CCDC88B-203ENST00000359902 PDLIM5Q96HC4 596 aaKnown RBP20.61■□□□□ 0.89
CCDC88B-203ENST00000359902 TEX37Q96LM6 180 aa20.61■□□□□ 0.89
CCDC88B-203ENST00000359902 AIG1Q9NVV5 245 aa20.61■□□□□ 0.89
CCDC88B-203ENST00000359902 PRMT5O14744 637 aaPredicted RBP20.6■□□□□ 0.89
CCDC88B-203ENST00000359902 CHEK2O96017 543 aa20.6■□□□□ 0.89
CCDC88B-203ENST00000359902 GRIK2Q13002 908 aa20.6■□□□□ 0.89
CCDC88B-203ENST00000359902 CDH18Q13634 790 aa20.6■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms