RNA–Protein interactions for RNA: ENST00000359082.3

SHANK1-202, Transcript of SH3 and multiple ankyrin repeat domains 1, humanhuman

TSL 5 BASIC

Gene SHANK1, Length 6,459 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK1-202ENST00000359082 PTPN20Q4JDL3 420 aa18.27■□□□□ 0.51
SHANK1-202ENST00000359082 AAGABQ6PD74 315 aa18.27■□□□□ 0.51
SHANK1-202ENST00000359082 FRRS1Q6ZNA5 592 aa18.27■□□□□ 0.51
SHANK1-202ENST00000359082 CPSF7Q8N684 471 aaKnown RBP18.27■□□□□ 0.51
SHANK1-202ENST00000359082 NXNL1Q96CM4 212 aa18.27■□□□□ 0.51
SHANK1-202ENST00000359082 MARK1Q9P0L2 795 aa18.27■□□□□ 0.51
SHANK1-202ENST00000359082 MST1RQ04912 1400 aa18.27■□□□□ 0.51
SHANK1-202ENST00000359082 KLRC4O43908 158 aa18.26■□□□□ 0.51
SHANK1-202ENST00000359082 UROSP10746 265 aa18.26■□□□□ 0.51
SHANK1-202ENST00000359082 PRKAR2AP13861 404 aaKnown RBP18.26■□□□□ 0.51
SHANK1-202ENST00000359082 SDC2P34741 201 aa18.26■□□□□ 0.51
SHANK1-202ENST00000359082 RAB25P57735 213 aa18.26■□□□□ 0.51
SHANK1-202ENST00000359082 ENPEPQ07075 957 aa18.26■□□□□ 0.51
SHANK1-202ENST00000359082 SIM2Q14190 667 aaPredicted RBP18.26■□□□□ 0.51
SHANK1-202ENST00000359082 QPCTQ16769 361 aa18.26■□□□□ 0.51
SHANK1-202ENST00000359082 TBC1D21Q8IYX1 336 aa18.26■□□□□ 0.51
SHANK1-202ENST00000359082 TCAIMQ8N3R3 496 aa18.26■□□□□ 0.51
SHANK1-202ENST00000359082 DNAJC19Q96DA6 116 aa18.26■□□□□ 0.51
SHANK1-202ENST00000359082 WRAP53Q9BUR4 548 aaKnown RBP18.26■□□□□ 0.51
SHANK1-202ENST00000359082 SPATA31D1Q6ZQQ2 1576 aa18.26■□□□□ 0.51
SHANK1-202ENST00000359082 TNFRSF11BO00300 401 aa18.26■□□□□ 0.51
SHANK1-202ENST00000359082 PCBP1Q15365 356 aaKnown RBP eCLIP18.26■□□□□ 0.51
SHANK1-202ENST00000359082 POTEHQ6S545 545 aa18.26■□□□□ 0.51
SHANK1-202ENST00000359082 GPR135Q8IZ08 494 aa18.26■□□□□ 0.51
SHANK1-202ENST00000359082 EBPLQ9BY08 206 aa18.26■□□□□ 0.51
SHANK1-202ENST00000359082 PTPRJQ12913 1337 aa18.26■□□□□ 0.51
SHANK1-202ENST00000359082 SPATA31C2B4DYI2 1134 aa18.26■□□□□ 0.51
SHANK1-202ENST00000359082 MFSD11O43934 449 aa18.26■□□□□ 0.51
SHANK1-202ENST00000359082 STBD1O95210 358 aa18.26■□□□□ 0.51
SHANK1-202ENST00000359082 ATXN1P54253 815 aaKnown RBP18.26■□□□□ 0.51
SHANK1-202ENST00000359082 ECM1Q16610 540 aa18.26■□□□□ 0.51
SHANK1-202ENST00000359082 CLEC6AQ6EIG7 209 aa18.26■□□□□ 0.51
SHANK1-202ENST00000359082 LINGO4Q6UY18 593 aa18.26■□□□□ 0.51
SHANK1-202ENST00000359082 TRPV1Q8NER1 839 aa18.26■□□□□ 0.51
SHANK1-202ENST00000359082 PMEPA1Q969W9 287 aa18.26■□□□□ 0.51
SHANK1-202ENST00000359082 CLPTM1LQ96KA5 538 aa18.26■□□□□ 0.51
SHANK1-202ENST00000359082 S100A14Q9HCY8 104 aa18.26■□□□□ 0.51
SHANK1-202ENST00000359082 C11orf16Q9NQ32 467 aa18.26■□□□□ 0.51
SHANK1-202ENST00000359082 HBS1LQ9Y450 684 aaKnown RBP18.26■□□□□ 0.51
SHANK1-202ENST00000359082 RAI2Q9Y5P3 530 aa18.26■□□□□ 0.51
SHANK1-202ENST00000359082 E9PAM4 449 aa18.26■□□□□ 0.51
SHANK1-202ENST00000359082 H3BM21 787 aa18.26■□□□□ 0.51
SHANK1-202ENST00000359082 RSL1D1O76021 490 aaKnown RBP18.26■□□□□ 0.51
SHANK1-202ENST00000359082 AKR1D1P51857 326 aa18.26■□□□□ 0.51
SHANK1-202ENST00000359082 ZDHHC20Q5W0Z9 365 aa18.26■□□□□ 0.51
SHANK1-202ENST00000359082 SNX20Q7Z614 316 aa18.26■□□□□ 0.51
SHANK1-202ENST00000359082 KCNU1A8MYU2 1149 aa18.26■□□□□ 0.51
SHANK1-202ENST00000359082 SCAMP1O15126 338 aa18.26■□□□□ 0.51
SHANK1-202ENST00000359082 NUDT17P0C025 328 aa18.26■□□□□ 0.51
SHANK1-202ENST00000359082 CCR10P46092 362 aa18.26■□□□□ 0.51
SHANK1-202ENST00000359082 GMFBP60983 142 aa18.26■□□□□ 0.51
SHANK1-202ENST00000359082 POU5F1Q01860 360 aaKnown RBP18.26■□□□□ 0.51
SHANK1-202ENST00000359082 LARS2Q15031 903 aaKnown RBP18.26■□□□□ 0.51
SHANK1-202ENST00000359082 VPS26BQ4G0F5 336 aa18.26■□□□□ 0.51
SHANK1-202ENST00000359082 EEF1DP3Q658K8 133 aa18.26■□□□□ 0.51
SHANK1-202ENST00000359082 XYLT1Q86Y38 959 aa18.26■□□□□ 0.51
SHANK1-202ENST00000359082 CLIP4Q8N3C7 705 aa18.26■□□□□ 0.51
SHANK1-202ENST00000359082 HEXDCQ8WVB3 486 aa18.26■□□□□ 0.51
SHANK1-202ENST00000359082 GORASP1Q9BQQ3 440 aa18.26■□□□□ 0.51
SHANK1-202ENST00000359082 CRHR1P34998 444 aa18.25■□□□□ 0.51
SHANK1-202ENST00000359082 GRM3Q14832 879 aa18.25■□□□□ 0.51
SHANK1-202ENST00000359082 KLHL35Q6PF15 583 aa18.25■□□□□ 0.51
SHANK1-202ENST00000359082 C11orf24Q96F05 449 aaPredicted RBP18.25■□□□□ 0.51
SHANK1-202ENST00000359082 FER1L4A9Z1Z3 1794 aa18.25■□□□□ 0.51
SHANK1-202ENST00000359082 CASP9P55211 416 aa18.25■□□□□ 0.51
SHANK1-202ENST00000359082 SP3Q02447 781 aa18.25■□□□□ 0.51
SHANK1-202ENST00000359082 KAT2AQ92830 837 aa18.25■□□□□ 0.51
SHANK1-202ENST00000359082 SLC4A9Q96Q91 983 aa18.25■□□□□ 0.51
SHANK1-202ENST00000359082 PHF12Q96QT6 1004 aa18.25■□□□□ 0.51
SHANK1-202ENST00000359082 CIB1Q99828 191 aa18.25■□□□□ 0.51
SHANK1-202ENST00000359082 TTPALQ9BTX7 342 aa18.25■□□□□ 0.51
SHANK1-202ENST00000359082 ALOX15BO15296 676 aa18.25■□□□□ 0.51
SHANK1-202ENST00000359082 TPST2O60704 377 aa18.25■□□□□ 0.51
SHANK1-202ENST00000359082 FOSL2P15408 326 aa18.25■□□□□ 0.51
SHANK1-202ENST00000359082 PRDM4Q9UKN5 801 aa18.25■□□□□ 0.51
SHANK1-202ENST00000359082 FBXW2Q9UKT8 454 aa18.25■□□□□ 0.51
SHANK1-202ENST00000359082 METTL18O95568 372 aa18.25■□□□□ 0.51
SHANK1-202ENST00000359082 GNPDA1P46926 289 aa18.25■□□□□ 0.51
SHANK1-202ENST00000359082 AIF1P55008 147 aa18.25■□□□□ 0.51
SHANK1-202ENST00000359082 CACNG1Q06432 222 aa18.25■□□□□ 0.51
SHANK1-202ENST00000359082 MON1AQ86VX9 555 aa18.25■□□□□ 0.51
SHANK1-202ENST00000359082 PEX5LQ8IYB4 626 aa18.25■□□□□ 0.51
SHANK1-202ENST00000359082 MREGQ8N565 214 aa18.25■□□□□ 0.51
SHANK1-202ENST00000359082 SNX33Q8WV41 574 aa18.25■□□□□ 0.51
SHANK1-202ENST00000359082 SHC3Q92529 594 aa18.25■□□□□ 0.51
SHANK1-202ENST00000359082 A0A1W2PQ72 361 aa18.25■□□□□ 0.51
SHANK1-202ENST00000359082 FAM172BPA6NC97 362 aa18.25■□□□□ 0.51
SHANK1-202ENST00000359082 RNASEH2AO75792 299 aaKnown RBP18.25■□□□□ 0.51
SHANK1-202ENST00000359082 UGT2B4P06133 528 aa18.25■□□□□ 0.51
SHANK1-202ENST00000359082 SPAM1P38567 509 aa18.25■□□□□ 0.51
SHANK1-202ENST00000359082 YAP1P46937 504 aaKnown RBP18.25■□□□□ 0.51
SHANK1-202ENST00000359082 VBP1P61758 197 aa18.25■□□□□ 0.51
SHANK1-202ENST00000359082 FCHO2Q0JRZ9 810 aa18.25■□□□□ 0.51
SHANK1-202ENST00000359082 TAF10Q12962 218 aa18.25■□□□□ 0.51
SHANK1-202ENST00000359082 RFWD3Q6PCD5 774 aa18.25■□□□□ 0.51
SHANK1-202ENST00000359082 RHOJQ9H4E5 214 aa18.25■□□□□ 0.51
SHANK1-202ENST00000359082 CORO1CQ9ULV4 474 aaPredicted RBP18.25■□□□□ 0.51
SHANK1-202ENST00000359082 ZFP37Q9Y6Q3 630 aaPredicted RBP18.25■□□□□ 0.51
SHANK1-202ENST00000359082 VIPP01282 170 aa18.24■□□□□ 0.51
SHANK1-202ENST00000359082 PLEKHG4Q58EX7 1191 aa18.24■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms