RNA–Protein interactions for RNA: ENST00000354098.7

SHMT1-203, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best) BASIC

Gene SHMT1, Length 1,656 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-203ENST00000354098 FBXO36Q8NEA4 188 aa21.93■■□□□ 1.1
SHMT1-203ENST00000354098 DDHD1Q8NEL9 900 aa21.93■■□□□ 1.1
SHMT1-203ENST00000354098 LRRC39Q96DD0 335 aa21.93■■□□□ 1.1
SHMT1-203ENST00000354098 SAYSD1Q9NPB0 183 aa21.93■■□□□ 1.1
SHMT1-203ENST00000354098 MARCH4Q9P2E8 410 aaPredicted RBP21.93■■□□□ 1.1
SHMT1-203ENST00000354098 ZC3H7BQ9UGR2 993 aaKnown RBP21.93■■□□□ 1.1
SHMT1-203ENST00000354098 SUFUQ9UMX1 484 aa21.93■■□□□ 1.1
SHMT1-203ENST00000354098 PLXNB3Q9ULL4 1909 aa21.93■■□□□ 1.1
SHMT1-203ENST00000354098 A0A1B0GTQ1 180 aa21.92■■□□□ 1.1
SHMT1-203ENST00000354098 SDC3O75056 442 aa21.92■■□□□ 1.1
SHMT1-203ENST00000354098 CER1O95813 267 aa21.92■■□□□ 1.1
SHMT1-203ENST00000354098 NME1P15531 152 aaKnown RBP21.92■■□□□ 1.1
SHMT1-203ENST00000354098 ZNF8P17098 575 aaPredicted RBP21.92■■□□□ 1.1
SHMT1-203ENST00000354098 JUNDP17535 347 aa21.92■■□□□ 1.1
SHMT1-203ENST00000354098 HK3P52790 923 aa21.92■■□□□ 1.1
SHMT1-203ENST00000354098 TMEM115Q12893 351 aaPredicted RBP21.92■■□□□ 1.1
SHMT1-203ENST00000354098 HLTFQ14527 1009 aaKnown RBP eCLIP21.92■■□□□ 1.1
SHMT1-203ENST00000354098 CRYMQ14894 314 aa21.92■■□□□ 1.1
SHMT1-203ENST00000354098 TCEA2Q15560 299 aa21.92■■□□□ 1.1
SHMT1-203ENST00000354098 LDB1Q86U70 411 aaPredicted RBP21.92■■□□□ 1.1
SHMT1-203ENST00000354098 PHACTR4Q8IZ21 702 aa21.92■■□□□ 1.1
SHMT1-203ENST00000354098 CFAP36Q96G28 342 aa21.92■■□□□ 1.1
SHMT1-203ENST00000354098 SGSM3Q96HU1 749 aa21.92■■□□□ 1.1
SHMT1-203ENST00000354098 PRKAB1Q9Y478 270 aa21.92■■□□□ 1.1
SHMT1-203ENST00000354098 FAM169AQ9Y6X4 670 aa21.92■■□□□ 1.1
SHMT1-203ENST00000354098 RIF1Q5UIP0 2472 aaKnown RBP21.92■■□□□ 1.1
SHMT1-203ENST00000354098 DNAJC6O75061 913 aa21.91■■□□□ 1.1
SHMT1-203ENST00000354098 ACRV1P26436 265 aa21.91■■□□□ 1.1
SHMT1-203ENST00000354098 RXRGP48443 463 aa21.91■■□□□ 1.1
SHMT1-203ENST00000354098 ARRB1P49407 418 aaPredicted RBP21.91■■□□□ 1.1
SHMT1-203ENST00000354098 FASTKD1Q53R41 847 aaKnown RBP21.91■■□□□ 1.1
SHMT1-203ENST00000354098 LDLRAP1Q5SW96 308 aa21.91■■□□□ 1.1
SHMT1-203ENST00000354098 UNC5AQ6ZN44 842 aa21.91■■□□□ 1.1
SHMT1-203ENST00000354098 IFT20Q8IY31 132 aa21.91■■□□□ 1.1
SHMT1-203ENST00000354098 ULK4Q96C45 1275 aa21.91■■□□□ 1.1
SHMT1-203ENST00000354098 SCARF2Q96GP6 870 aaPredicted RBP21.91■■□□□ 1.1
SHMT1-203ENST00000354098 NAT9Q9BTE0 207 aa21.91■■□□□ 1.1
SHMT1-203ENST00000354098 CARS2Q9HA77 564 aaKnown RBP21.91■■□□□ 1.1
SHMT1-203ENST00000354098 CATSPERZQ9NTU4 200 aa21.91■■□□□ 1.1
SHMT1-203ENST00000354098 VPS18Q9P253 973 aa21.91■■□□□ 1.1
SHMT1-203ENST00000354098 DGKBQ9Y6T7 804 aa21.91■■□□□ 1.1
SHMT1-203ENST00000354098 ZNF292O60281 2723 aa21.91■■□□□ 1.1
SHMT1-203ENST00000354098 CD3EAPO15446 510 aaKnown RBP21.91■■□□□ 1.1
SHMT1-203ENST00000354098 CDK14O94921 469 aa21.91■■□□□ 1.1
SHMT1-203ENST00000354098 RASGRP1O95267 797 aa21.91■■□□□ 1.1
SHMT1-203ENST00000354098 PAMP19021 973 aa21.91■■□□□ 1.1
SHMT1-203ENST00000354098 GNPDA1P46926 289 aa21.91■■□□□ 1.1
SHMT1-203ENST00000354098 B4GALNT1Q00973 533 aa21.91■■□□□ 1.1
SHMT1-203ENST00000354098 DBN1Q16643 649 aa21.91■■□□□ 1.1
SHMT1-203ENST00000354098 KIAA2013Q8IYS2 634 aa21.91■■□□□ 1.1
SHMT1-203ENST00000354098 OXR1Q8N573 874 aa21.91■■□□□ 1.1
SHMT1-203ENST00000354098 SERBP1Q8NC51 408 aaKnown RBP eCLIP21.91■■□□□ 1.1
SHMT1-203ENST00000354098 BOCQ9BWV1 1114 aa21.91■■□□□ 1.1
SHMT1-203ENST00000354098 RRAGDQ9NQL2 400 aaPredicted RBP21.91■■□□□ 1.1
SHMT1-203ENST00000354098 APOBEC3BQ9UH17 382 aaKnown RBP21.91■■□□□ 1.1
SHMT1-203ENST00000354098 EIF3HO15372 352 aaKnown RBP eCLIP21.9■■□□□ 1.1
SHMT1-203ENST00000354098 NUAK1O60285 661 aa21.9■■□□□ 1.1
SHMT1-203ENST00000354098 TNFP01375 233 aa21.9■■□□□ 1.1
SHMT1-203ENST00000354098 IVLP07476 585 aa21.9■■□□□ 1.1
SHMT1-203ENST00000354098 AKT1P31749 480 aa21.9■■□□□ 1.1
SHMT1-203ENST00000354098 C1orf61Q13536 156 aa21.9■■□□□ 1.1
SHMT1-203ENST00000354098 LONRF1Q17RB8 773 aa21.9■■□□□ 1.1
SHMT1-203ENST00000354098 SPANXN3Q5MJ09 141 aa21.9■■□□□ 1.1
SHMT1-203ENST00000354098 GATAD2AQ86YP4 633 aa21.9■■□□□ 1.1
SHMT1-203ENST00000354098 CCNJLQ8IV13 435 aa21.9■■□□□ 1.1
SHMT1-203ENST00000354098 GPR161Q8N6U8 529 aaKnown RBP21.9■■□□□ 1.1
SHMT1-203ENST00000354098 RASGEF1AQ8N9B8 481 aa21.9■■□□□ 1.1
SHMT1-203ENST00000354098 PYROXD1Q8WU10 500 aa21.9■■□□□ 1.1
SHMT1-203ENST00000354098 FAM122AQ96E09 287 aa21.9■■□□□ 1.1
SHMT1-203ENST00000354098 COPS8Q99627 209 aa21.9■■□□□ 1.1
SHMT1-203ENST00000354098 SLC13A1Q9BZW2 595 aa21.9■■□□□ 1.1
SHMT1-203ENST00000354098 TMEM168Q9H0V1 697 aa21.9■■□□□ 1.1
SHMT1-203ENST00000354098 TMEM9BQ9NQ34 198 aa21.9■■□□□ 1.1
SHMT1-203ENST00000354098 TM7SF3Q9NS93 570 aa21.9■■□□□ 1.1
SHMT1-203ENST00000354098 C20orf96Q9NUD7 363 aaPredicted RBP21.9■■□□□ 1.1
SHMT1-203ENST00000354098 DNAAF2Q9NVR5 837 aaKnown RBP21.9■■□□□ 1.1
SHMT1-203ENST00000354098 UCKL1Q9NWZ5 548 aa21.9■■□□□ 1.1
SHMT1-203ENST00000354098 ZDHHC3Q9NYG2 299 aa21.9■■□□□ 1.1
SHMT1-203ENST00000354098 ZNHIT2Q9UHR6 403 aa21.9■■□□□ 1.1
SHMT1-203ENST00000354098 NFU1Q9UMS0 254 aa21.9■■□□□ 1.1
SHMT1-203ENST00000354098 VEGFDO43915 354 aa21.89■■□□□ 1.1
SHMT1-203ENST00000354098 DFNA5O60443 496 aa21.89■■□□□ 1.1
SHMT1-203ENST00000354098 PIAS2O75928 621 aa21.89■■□□□ 1.1
SHMT1-203ENST00000354098 TTC4O95801 387 aa21.89■■□□□ 1.1
SHMT1-203ENST00000354098 CELA2BP08218 269 aaPredicted RBP21.89■■□□□ 1.1
SHMT1-203ENST00000354098 MSH3P20585 1137 aa21.89■■□□□ 1.1
SHMT1-203ENST00000354098 CUL1Q13616 776 aa21.89■■□□□ 1.1
SHMT1-203ENST00000354098 PYCR3Q53H96 274 aa21.89■■□□□ 1.1
SHMT1-203ENST00000354098 PRRT3Q5FWE3 981 aa21.89■■□□□ 1.1
SHMT1-203ENST00000354098 DET1Q7L5Y6 550 aa21.89■■□□□ 1.1
SHMT1-203ENST00000354098 TTC25Q96NG3 672 aa21.89■■□□□ 1.1
SHMT1-203ENST00000354098 LRRC61Q9BV99 259 aa21.89■■□□□ 1.1
SHMT1-203ENST00000354098 FOXP3Q9BZS1 431 aa21.89■■□□□ 1.1
SHMT1-203ENST00000354098 ANKZF1Q9H8Y5 726 aa21.89■■□□□ 1.1
SHMT1-203ENST00000354098 NOL12Q9UGY1 213 aaKnown RBP eCLIP21.89■■□□□ 1.1
SHMT1-203ENST00000354098 PLEKHM1Q9Y4G2 1056 aa21.89■■□□□ 1.1
SHMT1-203ENST00000354098 V9GYY5 206 aaPredicted RBP21.89■■□□□ 1.1
SHMT1-203ENST00000354098 LRP4O75096 1905 aa21.89■■□□□ 1.09
SHMT1-203ENST00000354098 C4orf47A7E2U8 309 aa21.88■■□□□ 1.09
SHMT1-203ENST00000354098 CHUKO15111 745 aa21.88■■□□□ 1.09
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms