RNA–Protein interactions for RNA: ENST00000352886.10

SHMT1-202, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2 BASIC

Gene SHMT1, Length 2,437 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-202ENST00000352886 PRMT9Q6P2P2 845 aa21.59■■□□□ 1.05
SHMT1-202ENST00000352886 AMIGO2Q86SJ2 522 aa21.59■■□□□ 1.05
SHMT1-202ENST00000352886 CARNMT1Q8N4J0 409 aa21.59■■□□□ 1.05
SHMT1-202ENST00000352886 MINDY1Q8N5J2 469 aa21.59■■□□□ 1.05
SHMT1-202ENST00000352886 OR2T34Q8NGX1 318 aa21.59■■□□□ 1.05
SHMT1-202ENST00000352886 OR2T3Q8NH03 318 aa21.59■■□□□ 1.05
SHMT1-202ENST00000352886 KCNJ9Q92806 393 aa21.59■■□□□ 1.05
SHMT1-202ENST00000352886 EFHD1Q9BUP0 239 aa21.59■■□□□ 1.05
SHMT1-202ENST00000352886 ASB1Q9Y576 335 aa21.59■■□□□ 1.05
SHMT1-202ENST00000352886 IQCF5A8MTL0 148 aa21.59■■□□□ 1.05
SHMT1-202ENST00000352886 PITPNM1O00562 1244 aa21.59■■□□□ 1.05
SHMT1-202ENST00000352886 EFEMP2O95967 443 aa21.59■■□□□ 1.05
SHMT1-202ENST00000352886 CYBBP04839 570 aa21.59■■□□□ 1.05
SHMT1-202ENST00000352886 GSTT1P30711 240 aa21.59■■□□□ 1.05
SHMT1-202ENST00000352886 YBX1P67809 324 aaKnown RBP21.59■■□□□ 1.05
SHMT1-202ENST00000352886 MYBPC1Q00872 1141 aa21.59■■□□□ 1.05
SHMT1-202ENST00000352886 OGFOD2Q6N063 350 aa21.59■■□□□ 1.05
SHMT1-202ENST00000352886 BLOC1S3Q6QNY0 202 aa21.59■■□□□ 1.05
SHMT1-202ENST00000352886 GPSM1Q86YR5 675 aa21.59■■□□□ 1.05
SHMT1-202ENST00000352886 SLC15A3Q8IY34 581 aa21.59■■□□□ 1.05
SHMT1-202ENST00000352886 ZNF461Q8TAF7 563 aa21.59■■□□□ 1.05
SHMT1-202ENST00000352886 PPWD1Q96BP3 646 aaKnown RBP21.59■■□□□ 1.05
SHMT1-202ENST00000352886 MYRFLQ96LU7 910 aa21.59■■□□□ 1.05
SHMT1-202ENST00000352886 CD274Q9NZQ7 290 aa21.59■■□□□ 1.05
SHMT1-202ENST00000352886 LHX3Q9UBR4 397 aa21.59■■□□□ 1.05
SHMT1-202ENST00000352886 LZTS1Q9Y250 596 aa21.59■■□□□ 1.05
SHMT1-202ENST00000352886 PCDHB9Q9Y5E1 797 aa21.59■■□□□ 1.05
SHMT1-202ENST00000352886 KLHL33A6NCF5 533 aa21.58■■□□□ 1.05
SHMT1-202ENST00000352886 TBL1XO60907 577 aa21.58■■□□□ 1.05
SHMT1-202ENST00000352886 CHEK2O96017 543 aa21.58■■□□□ 1.05
SHMT1-202ENST00000352886 PRR35P0CG20 571 aa21.58■■□□□ 1.05
SHMT1-202ENST00000352886 CD9P21926 228 aa21.58■■□□□ 1.05
SHMT1-202ENST00000352886 AARS2Q5JTZ9 985 aaKnown RBP21.58■■□□□ 1.05
SHMT1-202ENST00000352886 HMBOX1Q6NT76 420 aa21.58■■□□□ 1.05
SHMT1-202ENST00000352886 SCIMPQ6UWF3 145 aa21.58■■□□□ 1.05
SHMT1-202ENST00000352886 CANT1Q8WVQ1 401 aa21.58■■□□□ 1.05
SHMT1-202ENST00000352886 LRRC58Q96CX6 371 aa21.58■■□□□ 1.05
SHMT1-202ENST00000352886 UHRF1Q96T88 793 aaPredicted RBP21.58■■□□□ 1.05
SHMT1-202ENST00000352886 NUSAP1Q9BXS6 441 aaKnown RBP21.58■■□□□ 1.05
SHMT1-202ENST00000352886 NOL11Q9H8H0 719 aaKnown RBP21.58■■□□□ 1.05
SHMT1-202ENST00000352886 SLC52A3Q9NQ40 469 aa21.58■■□□□ 1.05
SHMT1-202ENST00000352886 GID8Q9NWU2 228 aa21.58■■□□□ 1.05
SHMT1-202ENST00000352886 EIF2B4Q9UI10 523 aaKnown RBP21.58■■□□□ 1.05
SHMT1-202ENST00000352886 FCF1Q9Y324 198 aaKnown RBP21.58■■□□□ 1.05
SHMT1-202ENST00000352886 C7orf72A4D263 438 aa21.58■■□□□ 1.04
SHMT1-202ENST00000352886 H7C0S8 307 aa21.58■■□□□ 1.04
SHMT1-202ENST00000352886 GIPC1O14908 333 aa21.58■■□□□ 1.04
SHMT1-202ENST00000352886 TNFAIP8O95379 198 aa21.58■■□□□ 1.04
SHMT1-202ENST00000352886 UROSP10746 265 aa21.58■■□□□ 1.04
SHMT1-202ENST00000352886 RHOAP61586 193 aa21.58■■□□□ 1.04
SHMT1-202ENST00000352886 NAA20P61599 178 aa21.58■■□□□ 1.04
SHMT1-202ENST00000352886 AHI1Q8N157 1196 aa21.58■■□□□ 1.04
SHMT1-202ENST00000352886 ACOX2Q99424 681 aa21.58■■□□□ 1.04
SHMT1-202ENST00000352886 YIPF1Q9Y548 306 aa21.58■■□□□ 1.04
SHMT1-202ENST00000352886 E2F3O00716 465 aa21.57■■□□□ 1.04
SHMT1-202ENST00000352886 TIPRLO75663 272 aa21.57■■□□□ 1.04
SHMT1-202ENST00000352886 PRAMEF12O95522 483 aa21.57■■□□□ 1.04
SHMT1-202ENST00000352886 SLC6A2P23975 617 aa21.57■■□□□ 1.04
SHMT1-202ENST00000352886 PTGER3P43115 390 aa21.57■■□□□ 1.04
SHMT1-202ENST00000352886 IKBKEQ14164 716 aa21.57■■□□□ 1.04
SHMT1-202ENST00000352886 PABPC1LQ4VXU2 614 aaKnown RBP21.57■■□□□ 1.04
SHMT1-202ENST00000352886 XKR7Q5GH72 579 aa21.57■■□□□ 1.04
SHMT1-202ENST00000352886 IYDQ6PHW0 289 aa21.57■■□□□ 1.04
SHMT1-202ENST00000352886 SPATA19Q7Z5L4 167 aa21.57■■□□□ 1.04
SHMT1-202ENST00000352886 DCBLD1Q8N8Z6 715 aa21.57■■□□□ 1.04
SHMT1-202ENST00000352886 OR56A4Q8NGH8 313 aa21.57■■□□□ 1.04
SHMT1-202ENST00000352886 TEX37Q96LM6 180 aa21.57■■□□□ 1.04
SHMT1-202ENST00000352886 ZNF597Q96LX8 424 aa21.57■■□□□ 1.04
SHMT1-202ENST00000352886 CIB1Q99828 191 aa21.57■■□□□ 1.04
SHMT1-202ENST00000352886 SH3GL3Q99963 347 aa21.57■■□□□ 1.04
SHMT1-202ENST00000352886 AIG1Q9NVV5 245 aa21.57■■□□□ 1.04
SHMT1-202ENST00000352886 CMTM6Q9NX76 183 aa21.57■■□□□ 1.04
SHMT1-202ENST00000352886 EGFL7Q9UHF1 273 aa21.57■■□□□ 1.04
SHMT1-202ENST00000352886 PKP3Q9Y446 797 aa21.57■■□□□ 1.04
SHMT1-202ENST00000352886 CLPTM1O96005 669 aa21.57■■□□□ 1.04
SHMT1-202ENST00000352886 ESR1P03372 595 aa21.57■■□□□ 1.04
SHMT1-202ENST00000352886 FAM58BPP0C7Q3 252 aa21.57■■□□□ 1.04
SHMT1-202ENST00000352886 TGFBIQ15582 683 aa21.57■■□□□ 1.04
SHMT1-202ENST00000352886 ATXN7L2Q5T6C5 722 aaPredicted RBP21.57■■□□□ 1.04
SHMT1-202ENST00000352886 FAM110BQ8TC76 370 aa21.57■■□□□ 1.04
SHMT1-202ENST00000352886 TBRG4Q969Z0 631 aaKnown RBP eCLIP21.57■■□□□ 1.04
SHMT1-202ENST00000352886 VPS33AQ96AX1 596 aa21.57■■□□□ 1.04
SHMT1-202ENST00000352886 IGSF21Q96ID5 467 aa21.57■■□□□ 1.04
SHMT1-202ENST00000352886 TRIM8Q9BZR9 551 aa21.57■■□□□ 1.04
SHMT1-202ENST00000352886 TRIM4Q9C037 500 aa21.57■■□□□ 1.04
SHMT1-202ENST00000352886 IL17CQ9P0M4 197 aa21.57■■□□□ 1.04
SHMT1-202ENST00000352886 ZNF711Q9Y462 761 aa21.57■■□□□ 1.04
SHMT1-202ENST00000352886 MYOCOSA0A1B0GUC4 107 aa21.56■■□□□ 1.04
SHMT1-202ENST00000352886 PQBP1O60828 265 aaKnown RBP21.56■■□□□ 1.04
SHMT1-202ENST00000352886 ABLIM3O94929 683 aa21.56■■□□□ 1.04
SHMT1-202ENST00000352886 MBL2P11226 248 aaPredicted RBP21.56■■□□□ 1.04
SHMT1-202ENST00000352886 ADARP55265 1226 aaKnown RBP21.56■■□□□ 1.04
SHMT1-202ENST00000352886 CCL23P55773 120 aa21.56■■□□□ 1.04
SHMT1-202ENST00000352886 ROR2Q01974 943 aaKnown RBP21.56■■□□□ 1.04
SHMT1-202ENST00000352886 GPRIN3Q6ZVF9 776 aa21.56■■□□□ 1.04
SHMT1-202ENST00000352886 EFL1Q7Z2Z2 1120 aaKnown RBP21.56■■□□□ 1.04
SHMT1-202ENST00000352886 RNF168Q8IYW5 571 aaPredicted RBP21.56■■□□□ 1.04
SHMT1-202ENST00000352886 OR2T11Q8NH01 316 aa21.56■■□□□ 1.04
SHMT1-202ENST00000352886 ZUFSPQ96AP4 578 aa21.56■■□□□ 1.04
SHMT1-202ENST00000352886 EID2BQ96D98 161 aa21.56■■□□□ 1.04
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms