RNA–Protein interactions for RNA: ENST00000343916.7

COL9A3-201, Transcript of collagen type IX alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL9A3, Length 2,485 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-201ENST00000343916 CNBD2Q96M20 576 aa19.19■□□□□ 0.66
COL9A3-201ENST00000343916 CDK15Q96Q40 435 aa19.19■□□□□ 0.66
COL9A3-201ENST00000343916 PCDH10Q9P2E7 1040 aa19.19■□□□□ 0.66
COL9A3-201ENST00000343916 PCTPQ9UKL6 214 aa19.19■□□□□ 0.66
COL9A3-201ENST00000343916 PSMA3P25788 255 aa19.19■□□□□ 0.66
COL9A3-201ENST00000343916 RPS6KA3P51812 740 aa19.19■□□□□ 0.66
COL9A3-201ENST00000343916 IL2P60568 153 aa19.19■□□□□ 0.66
COL9A3-201ENST00000343916 GRM2Q14416 872 aa19.19■□□□□ 0.66
COL9A3-201ENST00000343916 RPS6KA2Q15349 733 aa19.19■□□□□ 0.66
COL9A3-201ENST00000343916 LYSMD3Q7Z3D4 306 aa19.19■□□□□ 0.66
COL9A3-201ENST00000343916 DNAJB7Q7Z6W7 309 aaPredicted RBP19.19■□□□□ 0.66
COL9A3-201ENST00000343916 TMEM126BQ8IUX1 230 aa19.19■□□□□ 0.66
COL9A3-201ENST00000343916 TEX37Q96LM6 180 aa19.19■□□□□ 0.66
COL9A3-201ENST00000343916 CENPKQ9BS16 269 aa19.19■□□□□ 0.66
COL9A3-201ENST00000343916 HGH1Q9BTY7 390 aa19.19■□□□□ 0.66
COL9A3-201ENST00000343916 MRPL40Q9NQ50 206 aaKnown RBP19.19■□□□□ 0.66
COL9A3-201ENST00000343916 EIF2B4Q9UI10 523 aaKnown RBP19.19■□□□□ 0.66
COL9A3-201ENST00000343916 VPS51Q9UID3 782 aa19.19■□□□□ 0.66
COL9A3-201ENST00000343916 NME4O00746 187 aa19.18■□□□□ 0.66
COL9A3-201ENST00000343916 PRRG1O14668 218 aa19.18■□□□□ 0.66
COL9A3-201ENST00000343916 CES1P23141 567 aa19.18■□□□□ 0.66
COL9A3-201ENST00000343916 CSKP41240 450 aa19.18■□□□□ 0.66
COL9A3-201ENST00000343916 RBBP7Q16576 425 aa19.18■□□□□ 0.66
COL9A3-201ENST00000343916 CAMK1DQ8IU85 385 aa19.18■□□□□ 0.66
COL9A3-201ENST00000343916 HERC6Q8IVU3 1022 aa19.18■□□□□ 0.66
COL9A3-201ENST00000343916 ARL14EPQ8N8R7 260 aaPredicted RBP19.18■□□□□ 0.66
COL9A3-201ENST00000343916 PCYOX1LQ8NBM8 494 aa19.18■□□□□ 0.66
COL9A3-201ENST00000343916 EME1Q96AY2 570 aa19.18■□□□□ 0.66
COL9A3-201ENST00000343916 CEP295NLQ96MC4 621 aa19.18■□□□□ 0.66
COL9A3-201ENST00000343916 SDR39U1Q9NRG7 319 aaPredicted RBP19.18■□□□□ 0.66
COL9A3-201ENST00000343916 CD274Q9NZQ7 290 aa19.18■□□□□ 0.66
COL9A3-201ENST00000343916 ANGPT2O15123 496 aa19.18■□□□□ 0.66
COL9A3-201ENST00000343916 DENRO43583 198 aaKnown RBP19.18■□□□□ 0.66
COL9A3-201ENST00000343916 C18orf21Q32NC0 220 aaPredicted RBP19.18■□□□□ 0.66
COL9A3-201ENST00000343916 MAP7D1Q3KQU3 841 aa19.18■□□□□ 0.66
COL9A3-201ENST00000343916 TXNDC8Q6A555 127 aa19.18■□□□□ 0.66
COL9A3-201ENST00000343916 HACD2Q6Y1H2 254 aa19.18■□□□□ 0.66
COL9A3-201ENST00000343916 ROPN1LQ96C74 230 aa19.18■□□□□ 0.66
COL9A3-201ENST00000343916 PLEKHG4BQ96PX9 1271 aa19.18■□□□□ 0.66
COL9A3-201ENST00000343916 VPS9D1Q9Y2B5 631 aa19.18■□□□□ 0.66
COL9A3-201ENST00000343916 SNX13Q9Y5W8 968 aa19.18■□□□□ 0.66
COL9A3-201ENST00000343916 GKP32189 559 aa19.17■□□□□ 0.66
COL9A3-201ENST00000343916 CA5AP35218 305 aa19.17■□□□□ 0.66
COL9A3-201ENST00000343916 GRIA3P42263 894 aa19.17■□□□□ 0.66
COL9A3-201ENST00000343916 CDH18Q13634 790 aa19.17■□□□□ 0.66
COL9A3-201ENST00000343916 AMIGO2Q86SJ2 522 aa19.17■□□□□ 0.66
COL9A3-201ENST00000343916 GPSM1Q86YR5 675 aa19.17■□□□□ 0.66
COL9A3-201ENST00000343916 MARVELD2Q8N4S9 558 aa19.17■□□□□ 0.66
COL9A3-201ENST00000343916 CATSPER1Q8NEC5 780 aa19.17■□□□□ 0.66
COL9A3-201ENST00000343916 OR52B6Q8NGF0 335 aa19.17■□□□□ 0.66
COL9A3-201ENST00000343916 OR2T11Q8NH01 316 aa19.17■□□□□ 0.66
COL9A3-201ENST00000343916 ADAMTS19Q8TE59 1207 aa19.17■□□□□ 0.66
COL9A3-201ENST00000343916 VPS33AQ96AX1 596 aa19.17■□□□□ 0.66
COL9A3-201ENST00000343916 GPR63Q9BZJ6 419 aa19.17■□□□□ 0.66
COL9A3-201ENST00000343916 PLK2Q9NYY3 685 aa19.17■□□□□ 0.66
COL9A3-201ENST00000343916 IL17CQ9P0M4 197 aa19.17■□□□□ 0.66
COL9A3-201ENST00000343916 NDUFAF1Q9Y375 327 aa19.17■□□□□ 0.66
COL9A3-201ENST00000343916 PKP3Q9Y446 797 aa19.17■□□□□ 0.66
COL9A3-201ENST00000343916 ZNF711Q9Y462 761 aa19.17■□□□□ 0.66
COL9A3-201ENST00000343916 ZNF839A8K0R7 811 aa19.17■□□□□ 0.66
COL9A3-201ENST00000343916 FXYD1O00168 92 aa19.17■□□□□ 0.66
COL9A3-201ENST00000343916 KLK8O60259 260 aa19.17■□□□□ 0.66
COL9A3-201ENST00000343916 SNX2O60749 519 aa19.17■□□□□ 0.66
COL9A3-201ENST00000343916 ESRRBO95718 433 aa19.17■□□□□ 0.66
COL9A3-201ENST00000343916 SPATA31D3P0C874 917 aa19.17■□□□□ 0.66
COL9A3-201ENST00000343916 TRAP1Q12931 704 aaKnown RBP19.17■□□□□ 0.66
COL9A3-201ENST00000343916 VEPH1Q14D04 833 aa19.17■□□□□ 0.66
COL9A3-201ENST00000343916 TGFBIQ15582 683 aa19.17■□□□□ 0.66
COL9A3-201ENST00000343916 FAM151BQ6UXP7 276 aa19.17■□□□□ 0.66
COL9A3-201ENST00000343916 SPATA31D4Q6ZUB0 917 aa19.17■□□□□ 0.66
COL9A3-201ENST00000343916 DHFR2Q86XF0 187 aa19.17■□□□□ 0.66
COL9A3-201ENST00000343916 KCNJ9Q92806 393 aa19.17■□□□□ 0.66
COL9A3-201ENST00000343916 TOP1MTQ969P6 601 aa19.17■□□□□ 0.66
COL9A3-201ENST00000343916 GPATCH1Q9BRR8 931 aaKnown RBP19.17■□□□□ 0.66
COL9A3-201ENST00000343916 C1orf50Q9BV19 199 aa19.17■□□□□ 0.66
COL9A3-201ENST00000343916 ZNF334Q9HCZ1 680 aaPredicted RBP19.17■□□□□ 0.66
COL9A3-201ENST00000343916 EGFL7Q9UHF1 273 aa19.17■□□□□ 0.66
COL9A3-201ENST00000343916 RAB26Q9ULW5 256 aa19.17■□□□□ 0.66
COL9A3-201ENST00000343916 MYOCOSA0A1B0GUC4 107 aa19.16■□□□□ 0.66
COL9A3-201ENST00000343916 TCRBV3S1A0A5B6 114 aa19.16■□□□□ 0.66
COL9A3-201ENST00000343916 E2F3O00716 465 aa19.16■□□□□ 0.66
COL9A3-201ENST00000343916 STX16O14662 325 aa19.16■□□□□ 0.66
COL9A3-201ENST00000343916 SMAD6O43541 496 aaKnown RBP19.16■□□□□ 0.66
COL9A3-201ENST00000343916 OR4F21O95013 312 aa19.16■□□□□ 0.66
COL9A3-201ENST00000343916 PGM3O95394 542 aa19.16■□□□□ 0.66
COL9A3-201ENST00000343916 SOD2P04179 222 aa19.16■□□□□ 0.66
COL9A3-201ENST00000343916 PIM1P11309 404 aaPredicted RBP19.16■□□□□ 0.66
COL9A3-201ENST00000343916 ITGB6P18564 788 aa19.16■□□□□ 0.66
COL9A3-201ENST00000343916 ATP6V1B2P21281 511 aa19.16■□□□□ 0.66
COL9A3-201ENST00000343916 ARL1P40616 181 aaPredicted RBP19.16■□□□□ 0.66
COL9A3-201ENST00000343916 APCDD1Q8J025 514 aa19.16■□□□□ 0.66
COL9A3-201ENST00000343916 CDYL2Q8N8U2 506 aa19.16■□□□□ 0.66
COL9A3-201ENST00000343916 DEFB118Q96PH6 123 aa19.16■□□□□ 0.66
COL9A3-201ENST00000343916 HBEGFQ99075 208 aa19.16■□□□□ 0.66
COL9A3-201ENST00000343916 APPL1Q9UKG1 709 aa19.16■□□□□ 0.66
COL9A3-201ENST00000343916 GPR45Q9Y5Y3 372 aa19.16■□□□□ 0.66
COL9A3-201ENST00000343916 BBIP1A8MTZ0 92 aa19.16■□□□□ 0.66
COL9A3-201ENST00000343916 PFDN6O15212 129 aa19.16■□□□□ 0.66
COL9A3-201ENST00000343916 FZD6O60353 706 aa19.16■□□□□ 0.66
COL9A3-201ENST00000343916 CXCL10P02778 98 aa19.16■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 51.9 ms