RNA–Protein interactions for RNA: ENST00000341247.8

LIMA1-201, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMA1, Length 3,706 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-201ENST00000341247 DERL2Q9GZP9 239 aa10.26□□□□□ -0.77
LIMA1-201ENST00000341247 RIMS3Q9UJD0 308 aa10.26□□□□□ -0.77
LIMA1-201ENST00000341247 ZNF225Q9UK10 706 aa10.26□□□□□ -0.77
LIMA1-201ENST00000341247 C1orf232A0A0U1RR37 186 aa10.25□□□□□ -0.77
LIMA1-201ENST00000341247 LCHNA4D1U4 455 aa10.25□□□□□ -0.77
LIMA1-201ENST00000341247 TIPRLO75663 272 aa10.25□□□□□ -0.77
LIMA1-201ENST00000341247 ITGB8P26012 769 aa10.25□□□□□ -0.77
LIMA1-201ENST00000341247 SLC26A3P40879 764 aa10.25□□□□□ -0.77
LIMA1-201ENST00000341247 DEFB103AP81534 67 aa10.25□□□□□ -0.77
LIMA1-201ENST00000341247 C5orf22Q49AR2 442 aa10.25□□□□□ -0.77
LIMA1-201ENST00000341247 THEMIS2Q5TEJ8 643 aa10.25□□□□□ -0.77
LIMA1-201ENST00000341247 ALG1LQ6GMV1 187 aa10.25□□□□□ -0.77
LIMA1-201ENST00000341247 FRA10AC1Q70Z53 315 aa10.25□□□□□ -0.77
LIMA1-201ENST00000341247 TMEM150AQ86TG1 271 aa10.25□□□□□ -0.77
LIMA1-201ENST00000341247 MIER2Q8N344 545 aa10.25□□□□□ -0.77
LIMA1-201ENST00000341247 CD200R1Q8TD46 325 aa10.25□□□□□ -0.77
LIMA1-201ENST00000341247 MYLIPQ8WY64 445 aa10.25□□□□□ -0.77
LIMA1-201ENST00000341247 NR1H4Q96RI1 486 aaPredicted RBP10.25□□□□□ -0.77
LIMA1-201ENST00000341247 C6orf203Q9P0P8 240 aaPredicted RBP10.25□□□□□ -0.77
LIMA1-201ENST00000341247 LHX3Q9UBR4 397 aa10.25□□□□□ -0.77
LIMA1-201ENST00000341247 ZMYM5Q9UJ78 669 aa10.25□□□□□ -0.77
LIMA1-201ENST00000341247 TBC1D30Q9Y2I9 924 aa10.25□□□□□ -0.77
LIMA1-201ENST00000341247 AP4S1Q9Y587 144 aa10.25□□□□□ -0.77
LIMA1-201ENST00000341247 KIAA0100Q14667 2235 aaKnown RBP10.25□□□□□ -0.77
LIMA1-201ENST00000341247 ANAPC1Q9H1A4 1944 aa10.25□□□□□ -0.77
LIMA1-201ENST00000341247 FAM149AA5PLN7 773 aa10.25□□□□□ -0.77
LIMA1-201ENST00000341247 PITPNM1O00562 1244 aa10.25□□□□□ -0.77
LIMA1-201ENST00000341247 ETS2P15036 469 aa10.25□□□□□ -0.77
LIMA1-201ENST00000341247 ATP6V1B1P15313 513 aa10.25□□□□□ -0.77
LIMA1-201ENST00000341247 LBPP18428 481 aa10.25□□□□□ -0.77
LIMA1-201ENST00000341247 VEGFBP49765 207 aa10.25□□□□□ -0.77
LIMA1-201ENST00000341247 SUOXP51687 545 aa10.25□□□□□ -0.77
LIMA1-201ENST00000341247 CDKL1Q00532 357 aa10.25□□□□□ -0.77
LIMA1-201ENST00000341247 GSTA3Q16772 222 aa10.25□□□□□ -0.77
LIMA1-201ENST00000341247 PTRHD1Q6GMV3 140 aaKnown RBP10.25□□□□□ -0.77
LIMA1-201ENST00000341247 NCEH1Q6PIU2 408 aa10.25□□□□□ -0.77
LIMA1-201ENST00000341247 HS6ST3Q8IZP7 471 aa10.25□□□□□ -0.77
LIMA1-201ENST00000341247 PLEKHG4BQ96PX9 1271 aa10.25□□□□□ -0.77
LIMA1-201ENST00000341247 TSC22D3Q99576 134 aa10.25□□□□□ -0.77
LIMA1-201ENST00000341247 AP4B1Q9Y6B7 739 aa10.25□□□□□ -0.77
LIMA1-201ENST00000341247 C15orf38-AP3S2A0A0A6YYH1 394 aa10.25□□□□□ -0.77
LIMA1-201ENST00000341247 CLDN7O95471 211 aa10.25□□□□□ -0.77
LIMA1-201ENST00000341247 EFEMP2O95967 443 aa10.25□□□□□ -0.77
LIMA1-201ENST00000341247 CNPP09543 421 aaKnown RBP10.25□□□□□ -0.77
LIMA1-201ENST00000341247 PSMC3P17980 439 aa10.25□□□□□ -0.77
LIMA1-201ENST00000341247 GABRR2P28476 465 aa10.25□□□□□ -0.77
LIMA1-201ENST00000341247 GDF5P43026 501 aa10.25□□□□□ -0.77
LIMA1-201ENST00000341247 TTPAP49638 278 aa10.25□□□□□ -0.77
LIMA1-201ENST00000341247 NFKB2Q00653 900 aa10.25□□□□□ -0.77
LIMA1-201ENST00000341247 BTG3Q14201 252 aaPredicted RBP10.25□□□□□ -0.77
LIMA1-201ENST00000341247 AAK1Q2M2I8 961 aa10.25□□□□□ -0.77
LIMA1-201ENST00000341247 MTX3Q5HYI7 312 aa10.25□□□□□ -0.77
LIMA1-201ENST00000341247 KANK2Q63ZY3 851 aa10.25□□□□□ -0.77
LIMA1-201ENST00000341247 ARPINQ7Z6K5 226 aa10.25□□□□□ -0.77
LIMA1-201ENST00000341247 SPPL2CQ8IUH8 684 aa10.25□□□□□ -0.77
LIMA1-201ENST00000341247 RHEBL1Q8TAI7 183 aa10.25□□□□□ -0.77
LIMA1-201ENST00000341247 ASB9Q96DX5 294 aa10.25□□□□□ -0.77
LIMA1-201ENST00000341247 CIB1Q99828 191 aa10.25□□□□□ -0.77
LIMA1-201ENST00000341247 CIPCQ9C0C6 399 aa10.25□□□□□ -0.77
LIMA1-201ENST00000341247 NOL11Q9H8H0 719 aaKnown RBP10.25□□□□□ -0.77
LIMA1-201ENST00000341247 UBAP1Q9NZ09 502 aa10.25□□□□□ -0.77
LIMA1-201ENST00000341247 SLAMF8Q9P0V8 285 aa10.25□□□□□ -0.77
LIMA1-201ENST00000341247 MAP10Q9P2G4 905 aa10.25□□□□□ -0.77
LIMA1-201ENST00000341247 BCAP29Q9UHQ4 241 aa10.25□□□□□ -0.77
LIMA1-201ENST00000341247 ZNF711Q9Y462 761 aa10.25□□□□□ -0.77
LIMA1-201ENST00000341247 ARIH1Q9Y4X5 557 aaPredicted RBP10.25□□□□□ -0.77
LIMA1-201ENST00000341247 MICAL3Q7RTP6 2002 aa10.25□□□□□ -0.77
LIMA1-201ENST00000341247 TYW5A2RUC4 315 aaKnown RBP10.24□□□□□ -0.77
LIMA1-201ENST00000341247 PRAMEF1O95521 474 aa10.24□□□□□ -0.77
LIMA1-201ENST00000341247 TSPAN12O95859 305 aa10.24□□□□□ -0.77
LIMA1-201ENST00000341247 STK19P49842 368 aaPredicted RBP10.24□□□□□ -0.77
LIMA1-201ENST00000341247 UFM1P61960 85 aa10.24□□□□□ -0.77
LIMA1-201ENST00000341247 GALNT1Q10472 559 aaPredicted RBP10.24□□□□□ -0.77
LIMA1-201ENST00000341247 IKBKEQ14164 716 aa10.24□□□□□ -0.77
LIMA1-201ENST00000341247 RFTN1Q14699 578 aaPredicted RBP10.24□□□□□ -0.77
LIMA1-201ENST00000341247 SGO1Q5FBB7 561 aa10.24□□□□□ -0.77
LIMA1-201ENST00000341247 RABL3Q5HYI8 236 aa10.24□□□□□ -0.77
LIMA1-201ENST00000341247 ARMC12Q5T9G4 340 aa10.24□□□□□ -0.77
LIMA1-201ENST00000341247 HERC6Q8IVU3 1022 aa10.24□□□□□ -0.77
LIMA1-201ENST00000341247 TTC30BQ8N4P2 665 aa10.24□□□□□ -0.77
LIMA1-201ENST00000341247 LKAAEAR1Q8TD35 194 aa10.24□□□□□ -0.77
LIMA1-201ENST00000341247 PEX13Q92968 403 aa10.24□□□□□ -0.77
LIMA1-201ENST00000341247 C17orf80Q9BSJ5 609 aa10.24□□□□□ -0.77
LIMA1-201ENST00000341247 ASB8Q9H765 288 aa10.24□□□□□ -0.77
LIMA1-201ENST00000341247 COMMD8Q9NX08 183 aa10.24□□□□□ -0.77
LIMA1-201ENST00000341247 NDUFAF1Q9Y375 327 aa10.24□□□□□ -0.77
LIMA1-201ENST00000341247 CASQ2O14958 399 aaPredicted RBP10.24□□□□□ -0.77
LIMA1-201ENST00000341247 AKAP10O43572 662 aa10.24□□□□□ -0.77
LIMA1-201ENST00000341247 MT-ND1P03886 318 aa10.24□□□□□ -0.77
LIMA1-201ENST00000341247 SOD2P04179 222 aa10.24□□□□□ -0.77
LIMA1-201ENST00000341247 URODP06132 367 aa10.24□□□□□ -0.77
LIMA1-201ENST00000341247 CKMT2P17540 419 aa10.24□□□□□ -0.77
LIMA1-201ENST00000341247 GRIA2P42262 883 aa10.24□□□□□ -0.77
LIMA1-201ENST00000341247 HTR6P50406 440 aa10.24□□□□□ -0.77
LIMA1-201ENST00000341247 TIGD2Q4W5G0 525 aa10.24□□□□□ -0.77
LIMA1-201ENST00000341247 BBS7Q8IWZ6 715 aa10.24□□□□□ -0.77
LIMA1-201ENST00000341247 OR2T11Q8NH01 316 aa10.24□□□□□ -0.77
LIMA1-201ENST00000341247 CANT1Q8WVQ1 401 aa10.24□□□□□ -0.77
LIMA1-201ENST00000341247 ZFRQ96KR1 1074 aaKnown RBP10.24□□□□□ -0.77
LIMA1-201ENST00000341247 CFAP97Q9P2B7 532 aa10.24□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms