RNA–Protein interactions for RNA: ENST00000334448.5

CCDC88C-202, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best)

Gene CCDC88C, Length 1,055 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-202ENST00000334448 KDM4CQ9H3R0 1056 aa14.78□□□□□ -0.04
CCDC88C-202ENST00000334448 NMRAL1Q9HBL8 299 aa14.78□□□□□ -0.04
CCDC88C-202ENST00000334448 SYTL2Q9HCH5 934 aa14.78□□□□□ -0.04
CCDC88C-202ENST00000334448 GPAMQ9HCL2 828 aa14.78□□□□□ -0.04
CCDC88C-202ENST00000334448 PREBQ9HCU5 417 aa14.78□□□□□ -0.04
CCDC88C-202ENST00000334448 TMEM216Q9P0N5 145 aa14.78□□□□□ -0.04
CCDC88C-202ENST00000334448 THEGQ9P2T0 379 aa14.78□□□□□ -0.04
CCDC88C-202ENST00000334448 FNDC3AQ9Y2H6 1198 aaKnown RBP14.78□□□□□ -0.04
CCDC88C-202ENST00000334448 FADS2P1A8MWK0 482 aa14.77□□□□□ -0.05
CCDC88C-202ENST00000334448 EIF3FO00303 357 aaPredicted RBP14.77□□□□□ -0.05
CCDC88C-202ENST00000334448 PLK4O00444 970 aa14.77□□□□□ -0.05
CCDC88C-202ENST00000334448 NEMP1O14524 444 aa14.77□□□□□ -0.05
CCDC88C-202ENST00000334448 RHOBTB1O94844 696 aa14.77□□□□□ -0.05
CCDC88C-202ENST00000334448 IGLV3-19P01714 112 aa14.77□□□□□ -0.05
CCDC88C-202ENST00000334448 LTA4HP09960 611 aaKnown RBP14.77□□□□□ -0.05
CCDC88C-202ENST00000334448 TAC1P20366 129 aa14.77□□□□□ -0.05
CCDC88C-202ENST00000334448 CLCN7P51798 805 aa14.77□□□□□ -0.05
CCDC88C-202ENST00000334448 B4GALNT1Q00973 533 aa14.77□□□□□ -0.05
CCDC88C-202ENST00000334448 DLG1Q12959 904 aa14.77□□□□□ -0.05
CCDC88C-202ENST00000334448 ZNF460Q14592 562 aa14.77□□□□□ -0.05
CCDC88C-202ENST00000334448 TMEM259Q4ZIN3 620 aa14.77□□□□□ -0.05
CCDC88C-202ENST00000334448 LDLRAP1Q5SW96 308 aa14.77□□□□□ -0.05
CCDC88C-202ENST00000334448 KIAA1161Q6NSJ0 714 aa14.77□□□□□ -0.05
CCDC88C-202ENST00000334448 UGT3A1Q6NUS8 523 aa14.77□□□□□ -0.05
CCDC88C-202ENST00000334448 TMEM207Q6UWW9 146 aa14.77□□□□□ -0.05
CCDC88C-202ENST00000334448 PIM3Q86V86 326 aa14.77□□□□□ -0.05
CCDC88C-202ENST00000334448 TRIM42Q8IWZ5 723 aa14.77□□□□□ -0.05
CCDC88C-202ENST00000334448 UBALD2Q8IYN6 164 aa14.77□□□□□ -0.05
CCDC88C-202ENST00000334448 NKAPQ8N5F7 415 aaKnown RBP14.77□□□□□ -0.05
CCDC88C-202ENST00000334448 ARMC2Q8NEN0 867 aa14.77□□□□□ -0.05
CCDC88C-202ENST00000334448 CD200R1Q8TD46 325 aa14.77□□□□□ -0.05
CCDC88C-202ENST00000334448 KCTD4Q8WVF5 259 aa14.77□□□□□ -0.05
CCDC88C-202ENST00000334448 GLYATL1Q969I3 302 aa14.77□□□□□ -0.05
CCDC88C-202ENST00000334448 CHMP6Q96FZ7 201 aa14.77□□□□□ -0.05
CCDC88C-202ENST00000334448 PDLIM5Q96HC4 596 aaKnown RBP14.77□□□□□ -0.05
CCDC88C-202ENST00000334448 MRGPRX1Q96LB2 322 aa14.77□□□□□ -0.05
CCDC88C-202ENST00000334448 NELL2Q99435 816 aa14.77□□□□□ -0.05
CCDC88C-202ENST00000334448 MRPL57Q9BQC6 102 aaKnown RBP14.77□□□□□ -0.05
CCDC88C-202ENST00000334448 WRAP53Q9BUR4 548 aaKnown RBP14.77□□□□□ -0.05
CCDC88C-202ENST00000334448 BOCQ9BWV1 1114 aa14.77□□□□□ -0.05
CCDC88C-202ENST00000334448 DERL2Q9GZP9 239 aa14.77□□□□□ -0.05
CCDC88C-202ENST00000334448 C12orf65Q9H3J6 166 aaKnown RBP14.77□□□□□ -0.05
CCDC88C-202ENST00000334448 MLXIPLQ9NP71 852 aa14.77□□□□□ -0.05
CCDC88C-202ENST00000334448 FBXL12Q9NXK8 326 aa14.77□□□□□ -0.05
CCDC88C-202ENST00000334448 SERGEFQ9UGK8 458 aa14.77□□□□□ -0.05
CCDC88C-202ENST00000334448 DHRS7Q9Y394 339 aa14.77□□□□□ -0.05
CCDC88C-202ENST00000334448 A0A1W2PP55 124 aa14.76□□□□□ -0.05
CCDC88C-202ENST00000334448 GMNCA6NCL1 334 aa14.76□□□□□ -0.05
CCDC88C-202ENST00000334448 CFAP99D6REC4 459 aa14.76□□□□□ -0.05
CCDC88C-202ENST00000334448 F8W8V4 182 aa14.76□□□□□ -0.05
CCDC88C-202ENST00000334448 QSOX1O00391 747 aa14.76□□□□□ -0.05
CCDC88C-202ENST00000334448 MMP20O60882 483 aa14.76□□□□□ -0.05
CCDC88C-202ENST00000334448 NIPSNAP2O75323 286 aa14.76□□□□□ -0.05
CCDC88C-202ENST00000334448 TSPAN12O95859 305 aa14.76□□□□□ -0.05
CCDC88C-202ENST00000334448 SAT1P21673 171 aa14.76□□□□□ -0.05
CCDC88C-202ENST00000334448 ATP6V0D1P61421 351 aa14.76□□□□□ -0.05
CCDC88C-202ENST00000334448 PDAP1Q13442 181 aaKnown RBP14.76□□□□□ -0.05
CCDC88C-202ENST00000334448 FZD5Q13467 585 aa14.76□□□□□ -0.05
CCDC88C-202ENST00000334448 ACAP2Q15057 778 aa14.76□□□□□ -0.05
CCDC88C-202ENST00000334448 TECRLQ5HYJ1 363 aa14.76□□□□□ -0.05
CCDC88C-202ENST00000334448 TTC19Q6DKK2 380 aaPredicted RBP14.76□□□□□ -0.05
CCDC88C-202ENST00000334448 LRRC8EQ6NSJ5 796 aa14.76□□□□□ -0.05
CCDC88C-202ENST00000334448 TMEM92Q6UXU6 159 aa14.76□□□□□ -0.05
CCDC88C-202ENST00000334448 ADAMTSL4Q6UY14 1074 aa14.76□□□□□ -0.05
CCDC88C-202ENST00000334448 SYT13Q7L8C5 426 aa14.76□□□□□ -0.05
CCDC88C-202ENST00000334448 OR6Y1Q8NGX8 325 aa14.76□□□□□ -0.05
CCDC88C-202ENST00000334448 GIMAP7Q8NHV1 300 aa14.76□□□□□ -0.05
CCDC88C-202ENST00000334448 RHEBL1Q8TAI7 183 aa14.76□□□□□ -0.05
CCDC88C-202ENST00000334448 GDAP1Q8TB36 358 aa14.76□□□□□ -0.05
CCDC88C-202ENST00000334448 ANKRD49Q8WVL7 239 aa14.76□□□□□ -0.05
CCDC88C-202ENST00000334448 SIPA1Q96FS4 1042 aa14.76□□□□□ -0.05
CCDC88C-202ENST00000334448 GPR21Q99679 349 aa14.76□□□□□ -0.05
CCDC88C-202ENST00000334448 C1QTNF2Q9BXJ5 285 aa14.76□□□□□ -0.05
CCDC88C-202ENST00000334448 MRPL46Q9H2W6 279 aaKnown RBP14.76□□□□□ -0.05
CCDC88C-202ENST00000334448 EPHX3Q9H6B9 360 aa14.76□□□□□ -0.05
CCDC88C-202ENST00000334448 LTB4R2Q9NPC1 389 aa14.76□□□□□ -0.05
CCDC88C-202ENST00000334448 PRDM6Q9NQX0 595 aa14.76□□□□□ -0.05
CCDC88C-202ENST00000334448 ZNF358Q9NW07 568 aa14.76□□□□□ -0.05
CCDC88C-202ENST00000334448 COPG2Q9UBF2 871 aa14.76□□□□□ -0.05
CCDC88C-202ENST00000334448 CD84Q9UIB8 345 aa14.76□□□□□ -0.05
CCDC88C-202ENST00000334448 TRMT6Q9UJA5 497 aaKnown RBP14.76□□□□□ -0.05
CCDC88C-202ENST00000334448 CNOT6Q9ULM6 557 aaKnown RBP14.76□□□□□ -0.05
CCDC88C-202ENST00000334448 PRUNE2Q8WUY3 3088 aa14.75□□□□□ -0.05
CCDC88C-202ENST00000334448 KRBA1A5PL33 1030 aa14.75□□□□□ -0.05
CCDC88C-202ENST00000334448 G3V2L1 256 aa14.75□□□□□ -0.05
CCDC88C-202ENST00000334448 LZTS3O60299 673 aaPredicted RBP14.75□□□□□ -0.05
CCDC88C-202ENST00000334448 RNASEH2AO75792 299 aaKnown RBP14.75□□□□□ -0.05
CCDC88C-202ENST00000334448 RBP1P09455 135 aa14.75□□□□□ -0.05
CCDC88C-202ENST00000334448 SBK3P0C264 359 aa14.75□□□□□ -0.05
CCDC88C-202ENST00000334448 CCDC166P0CW27 439 aa14.75□□□□□ -0.05
CCDC88C-202ENST00000334448 RALBP11234 206 aa14.75□□□□□ -0.05
CCDC88C-202ENST00000334448 CD1DP15813 335 aa14.75□□□□□ -0.05
CCDC88C-202ENST00000334448 TARSP26639 723 aaKnown RBP14.75□□□□□ -0.05
CCDC88C-202ENST00000334448 GMPRP36959 345 aa14.75□□□□□ -0.05
CCDC88C-202ENST00000334448 DGKEP52429 567 aa14.75□□□□□ -0.05
CCDC88C-202ENST00000334448 PRKAA2P54646 552 aa14.75□□□□□ -0.05
CCDC88C-202ENST00000334448 ADPRHP54922 357 aa14.75□□□□□ -0.05
CCDC88C-202ENST00000334448 RPS21P63220 83 aaKnown RBP14.75□□□□□ -0.05
CCDC88C-202ENST00000334448 GBX1Q14549 363 aa14.75□□□□□ -0.05
CCDC88C-202ENST00000334448 PCLAFQ15004 111 aa14.75□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms