RNA–Protein interactions for RNA: ENST00000297261.6

SHH-201, Transcript of sonic hedgehog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHH, Length 4,454 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-201ENST00000297261 RNASEH2AO75792 299 aaKnown RBP15.27■□□□□ 0.03
SHH-201ENST00000297261 MT-CYBP00156 380 aaPredicted RBP15.27■□□□□ 0.03
SHH-201ENST00000297261 HOXB8P17481 243 aaPredicted RBP15.27■□□□□ 0.03
SHH-201ENST00000297261 PIK3CGP48736 1102 aa15.27■□□□□ 0.03
SHH-201ENST00000297261 OXCT1P55809 520 aa15.27■□□□□ 0.03
SHH-201ENST00000297261 INCA1Q0VD86 236 aa15.27■□□□□ 0.03
SHH-201ENST00000297261 ZNF177Q13360 481 aaPredicted RBP15.27■□□□□ 0.03
SHH-201ENST00000297261 PCLAFQ15004 111 aa15.27■□□□□ 0.03
SHH-201ENST00000297261 C11orf96Q7Z7L8 435 aa15.27■□□□□ 0.03
SHH-201ENST00000297261 NIPA2Q8N8Q9 360 aa15.27■□□□□ 0.03
SHH-201ENST00000297261 CLHC1Q8NHS4 586 aa15.27■□□□□ 0.03
SHH-201ENST00000297261 SLC47A1Q96FL8 570 aa15.27■□□□□ 0.03
SHH-201ENST00000297261 OLFM1Q99784 485 aa15.27■□□□□ 0.03
SHH-201ENST00000297261 FTHL17Q9BXU8 183 aa15.27■□□□□ 0.03
SHH-201ENST00000297261 ABCC13Q9NSE7 274 aa15.27■□□□□ 0.03
SHH-201ENST00000297261 OGDHLQ9ULD0 1010 aa15.27■□□□□ 0.03
SHH-201ENST00000297261 ASB3Q9Y575 518 aa15.27■□□□□ 0.03
SHH-201ENST00000297261 MDM4O15151 490 aa15.26■□□□□ 0.03
SHH-201ENST00000297261 RGS10O43665 173 aa15.26■□□□□ 0.03
SHH-201ENST00000297261 PGLSO95336 258 aa15.26■□□□□ 0.03
SHH-201ENST00000297261 ITGALP20701 1170 aa15.26■□□□□ 0.03
SHH-201ENST00000297261 WARSP23381 471 aaKnown RBP15.26■□□□□ 0.03
SHH-201ENST00000297261 GJA9P57773 515 aa15.26■□□□□ 0.03
SHH-201ENST00000297261 PHKG1Q16816 387 aa15.26■□□□□ 0.03
SHH-201ENST00000297261 SELENOMQ8WWX9 145 aa15.26■□□□□ 0.03
SHH-201ENST00000297261 SERPINB11Q96P15 392 aa15.26■□□□□ 0.03
SHH-201ENST00000297261 OXSMQ9NWU1 459 aa15.26■□□□□ 0.03
SHH-201ENST00000297261 PSME2Q9UL46 239 aa15.26■□□□□ 0.03
SHH-201ENST00000297261 MLYCDO95822 493 aa15.26■□□□□ 0.03
SHH-201ENST00000297261 GMPRP36959 345 aa15.26■□□□□ 0.03
SHH-201ENST00000297261 BCAP31P51572 246 aa15.26■□□□□ 0.03
SHH-201ENST00000297261 RPL26P61254 145 aaKnown RBP15.26■□□□□ 0.03
SHH-201ENST00000297261 ANGPT1Q15389 498 aa15.26■□□□□ 0.03
SHH-201ENST00000297261 TAB1Q15750 504 aa15.26■□□□□ 0.03
SHH-201ENST00000297261 ZSWIM7Q19AV6 140 aa15.26■□□□□ 0.03
SHH-201ENST00000297261 TIGD5Q53EQ6 642 aa15.26■□□□□ 0.03
SHH-201ENST00000297261 ZCCHC8Q6NZY4 707 aaKnown RBP15.26■□□□□ 0.03
SHH-201ENST00000297261 ZNF549Q6P9A3 640 aa15.26■□□□□ 0.03
SHH-201ENST00000297261 WDTC1Q8N5D0 677 aa15.26■□□□□ 0.03
SHH-201ENST00000297261 CHCHD6Q9BRQ6 235 aa15.26■□□□□ 0.03
SHH-201ENST00000297261 TMEM106CQ9BVX2 250 aa15.26■□□□□ 0.03
SHH-201ENST00000297261 CCNB1IP1Q9NPC3 277 aa15.26■□□□□ 0.03
SHH-201ENST00000297261 SCUBE2Q9NQ36 999 aa15.26■□□□□ 0.03
SHH-201ENST00000297261 C8orf4Q9NR00 106 aa15.26■□□□□ 0.03
SHH-201ENST00000297261 TLR8Q9NR97 1041 aaKnown RBP15.26■□□□□ 0.03
SHH-201ENST00000297261 SRRDQ9UH36 339 aa15.26■□□□□ 0.03
SHH-201ENST00000297261 HTRA2O43464 458 aaPredicted RBP15.26■□□□□ 0.03
SHH-201ENST00000297261 ULK1O75385 1050 aa15.26■□□□□ 0.03
SHH-201ENST00000297261 PRKCQQ04759 706 aa15.26■□□□□ 0.03
SHH-201ENST00000297261 QPRTQ15274 297 aa15.26■□□□□ 0.03
SHH-201ENST00000297261 EPGNQ6UW88 154 aa15.26■□□□□ 0.03
SHH-201ENST00000297261 AADATQ8N5Z0 425 aa15.26■□□□□ 0.03
SHH-201ENST00000297261 SUN5Q8TC36 379 aa15.26■□□□□ 0.03
SHH-201ENST00000297261 MYDGFQ969H8 173 aa15.26■□□□□ 0.03
SHH-201ENST00000297261 OR52E6Q96RD3 313 aa15.26■□□□□ 0.03
SHH-201ENST00000297261 MRPL9Q9BYD2 267 aaKnown RBP15.26■□□□□ 0.03
SHH-201ENST00000297261 TRIM45Q9H8W5 580 aaPredicted RBP15.26■□□□□ 0.03
SHH-201ENST00000297261 AMBNQ9NP70 447 aa15.26■□□□□ 0.03
SHH-201ENST00000297261 SH3PXD2BA1X283 911 aa15.25■□□□□ 0.03
SHH-201ENST00000297261 FGF3P11487 239 aaPredicted RBP15.25■□□□□ 0.03
SHH-201ENST00000297261 KCNE1P15382 129 aa15.25■□□□□ 0.03
SHH-201ENST00000297261 HECTD2Q5U5R9 776 aa15.25■□□□□ 0.03
SHH-201ENST00000297261 GPR152Q8TDT2 470 aa15.25■□□□□ 0.03
SHH-201ENST00000297261 PRDM16Q9HAZ2 1276 aa15.25■□□□□ 0.03
SHH-201ENST00000297261 CD320Q9NPF0 282 aa15.25■□□□□ 0.03
SHH-201ENST00000297261 TMEM39AQ9NV64 488 aa15.25■□□□□ 0.03
SHH-201ENST00000297261 GNPTGQ9UJJ9 305 aa15.25■□□□□ 0.03
SHH-201ENST00000297261 CNTN6Q9UQ52 1028 aa15.25■□□□□ 0.03
SHH-201ENST00000297261 CNTRLQ7Z7A1 2325 aa15.25■□□□□ 0.03
SHH-201ENST00000297261 FAM220BPB1ANY3 271 aa15.25■□□□□ 0.03
SHH-201ENST00000297261 EPN2O95208 641 aa15.25■□□□□ 0.03
SHH-201ENST00000297261 LRATO95237 230 aa15.25■□□□□ 0.03
SHH-201ENST00000297261 IGFBP5P24593 272 aa15.25■□□□□ 0.03
SHH-201ENST00000297261 PRKCHP24723 683 aa15.25■□□□□ 0.03
SHH-201ENST00000297261 POLR2JP52435 117 aaKnown RBP15.25■□□□□ 0.03
SHH-201ENST00000297261 OLIG2Q13516 323 aa15.25■□□□□ 0.03
SHH-201ENST00000297261 PSMD5Q16401 504 aa15.25■□□□□ 0.03
SHH-201ENST00000297261 PNPT1Q8TCS8 783 aaKnown RBP15.25■□□□□ 0.03
SHH-201ENST00000297261 ESAMQ96AP7 390 aa15.25■□□□□ 0.03
SHH-201ENST00000297261 SIGLEC10Q96LC7 697 aa15.25■□□□□ 0.03
SHH-201ENST00000297261 KLHL5Q96PQ7 755 aa15.25■□□□□ 0.03
SHH-201ENST00000297261 SOX17Q9H6I2 414 aaPredicted RBP15.25■□□□□ 0.03
SHH-201ENST00000297261 CDC14AQ9UNH5 594 aa15.25■□□□□ 0.03
SHH-201ENST00000297261 SLC27A5Q9Y2P5 690 aa15.25■□□□□ 0.03
SHH-201ENST00000297261 POLR3HQ9Y535 204 aaPredicted RBP15.25■□□□□ 0.03
SHH-201ENST00000297261 SESN1Q9Y6P5 492 aa15.25■□□□□ 0.03
SHH-201ENST00000297261 LTBP1Q14766 1721 aa15.25■□□□□ 0.03
SHH-201ENST00000297261 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP15.25■□□□□ 0.03
SHH-201ENST00000297261 K7EPI3 171 aa15.25■□□□□ 0.03
SHH-201ENST00000297261 TSPAN19P0C672 248 aa15.25■□□□□ 0.03
SHH-201ENST00000297261 HDCP19113 662 aa15.25■□□□□ 0.03
SHH-201ENST00000297261 PTPN9P43378 593 aa15.25■□□□□ 0.03
SHH-201ENST00000297261 POLD2P49005 469 aa15.25■□□□□ 0.03
SHH-201ENST00000297261 CPSF6Q16630 551 aaKnown RBP eCLIP15.25■□□□□ 0.03
SHH-201ENST00000297261 MOGQ16653 247 aa15.25■□□□□ 0.03
SHH-201ENST00000297261 MARCH8Q5T0T0 291 aa15.25■□□□□ 0.03
SHH-201ENST00000297261 CRYBG2Q8N1P7 616 aa15.25■□□□□ 0.03
SHH-201ENST00000297261 UXS1Q8NBZ7 420 aa15.25■□□□□ 0.03
SHH-201ENST00000297261 ZNF624Q9P2J8 865 aaPredicted RBP15.25■□□□□ 0.03
SHH-201ENST00000297261 PIP5K1BO14986 540 aa15.25■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms