RNA–Protein interactions for RNA: ENST00000291074.9

VPS53-201, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,656 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-201ENST00000291074 AP4B1Q9Y6B7 739 aa19.89■□□□□ 0.77
VPS53-201ENST00000291074 RHDQ02161 417 aa19.89■□□□□ 0.77
VPS53-201ENST00000291074 C18orf21Q32NC0 220 aaPredicted RBP19.89■□□□□ 0.77
VPS53-201ENST00000291074 C6orf52Q5T4I8 152 aa19.89■□□□□ 0.77
VPS53-201ENST00000291074 GPSM1Q86YR5 675 aa19.89■□□□□ 0.77
VPS53-201ENST00000291074 TEX37Q96LM6 180 aa19.89■□□□□ 0.77
VPS53-201ENST00000291074 CDK15Q96Q40 435 aa19.89■□□□□ 0.77
VPS53-201ENST00000291074 MRPL40Q9NQ50 206 aaKnown RBP19.89■□□□□ 0.77
VPS53-201ENST00000291074 VPS9D1Q9Y2B5 631 aa19.89■□□□□ 0.77
VPS53-201ENST00000291074 SMAD6O43541 496 aaKnown RBP19.88■□□□□ 0.77
VPS53-201ENST00000291074 KLK8O60259 260 aa19.88■□□□□ 0.77
VPS53-201ENST00000291074 FZD6O60353 706 aa19.88■□□□□ 0.77
VPS53-201ENST00000291074 APLP1P51693 650 aa19.88■□□□□ 0.77
VPS53-201ENST00000291074 CDH18Q13634 790 aa19.88■□□□□ 0.77
VPS53-201ENST00000291074 RPS6KA2Q15349 733 aa19.88■□□□□ 0.77
VPS53-201ENST00000291074 APCDD1Q8J025 514 aa19.88■□□□□ 0.77
VPS53-201ENST00000291074 PCYOX1LQ8NBM8 494 aa19.88■□□□□ 0.77
VPS53-201ENST00000291074 TSC22D3Q99576 134 aa19.88■□□□□ 0.77
VPS53-201ENST00000291074 SDR39U1Q9NRG7 319 aaPredicted RBP19.88■□□□□ 0.77
VPS53-201ENST00000291074 SPATS2LQ9NUQ6 558 aaKnown RBP19.88■□□□□ 0.77
VPS53-201ENST00000291074 FXYD1O00168 92 aa19.88■□□□□ 0.77
VPS53-201ENST00000291074 STX16O14662 325 aa19.88■□□□□ 0.77
VPS53-201ENST00000291074 ANGPT2O15123 496 aa19.88■□□□□ 0.77
VPS53-201ENST00000291074 GREM1O60565 184 aa19.88■□□□□ 0.77
VPS53-201ENST00000291074 SNX2O60749 519 aa19.88■□□□□ 0.77
VPS53-201ENST00000291074 ATP6V1B2P21281 511 aa19.88■□□□□ 0.77
VPS53-201ENST00000291074 CHN2P52757 468 aa19.88■□□□□ 0.77
VPS53-201ENST00000291074 GRM2Q14416 872 aa19.88■□□□□ 0.77
VPS53-201ENST00000291074 TPGS2Q68CL5 300 aa19.88■□□□□ 0.77
VPS53-201ENST00000291074 FAM151BQ6UXP7 276 aa19.88■□□□□ 0.77
VPS53-201ENST00000291074 TMEM126BQ8IUX1 230 aa19.88■□□□□ 0.77
VPS53-201ENST00000291074 ST13P4Q8IZP2 240 aaPredicted RBP19.88■□□□□ 0.77
VPS53-201ENST00000291074 OR52B6Q8NGF0 335 aa19.88■□□□□ 0.77
VPS53-201ENST00000291074 OR2T11Q8NH01 316 aa19.88■□□□□ 0.77
VPS53-201ENST00000291074 KCNJ9Q92806 393 aa19.88■□□□□ 0.77
VPS53-201ENST00000291074 GPATCH1Q9BRR8 931 aaKnown RBP19.88■□□□□ 0.77
VPS53-201ENST00000291074 PLK2Q9NYY3 685 aa19.88■□□□□ 0.77
VPS53-201ENST00000291074 PKP3Q9Y446 797 aa19.88■□□□□ 0.77
VPS53-201ENST00000291074 ZNF839A8K0R7 811 aa19.87■□□□□ 0.77
VPS53-201ENST00000291074 GNRH1P01148 92 aa19.87■□□□□ 0.77
VPS53-201ENST00000291074 ITGB6P18564 788 aa19.87■□□□□ 0.77
VPS53-201ENST00000291074 ROPN1LQ96C74 230 aa19.87■□□□□ 0.77
VPS53-201ENST00000291074 ALG14Q96F25 216 aa19.87■□□□□ 0.77
VPS53-201ENST00000291074 MYO19Q96H55 970 aa19.87■□□□□ 0.77
VPS53-201ENST00000291074 CNBD2Q96M20 576 aa19.87■□□□□ 0.77
VPS53-201ENST00000291074 C1orf50Q9BV19 199 aa19.87■□□□□ 0.77
VPS53-201ENST00000291074 STOML2Q9UJZ1 356 aa19.87■□□□□ 0.77
VPS53-201ENST00000291074 GPR45Q9Y5Y3 372 aa19.87■□□□□ 0.77
VPS53-201ENST00000291074 CPQQ9Y646 472 aa19.87■□□□□ 0.77
VPS53-201ENST00000291074 TCRBV3S1A0A5B6 114 aa19.87■□□□□ 0.77
VPS53-201ENST00000291074 H7C0S8 307 aa19.87■□□□□ 0.77
VPS53-201ENST00000291074 OR4F21O95013 312 aa19.87■□□□□ 0.77
VPS53-201ENST00000291074 ESRRBO95718 433 aa19.87■□□□□ 0.77
VPS53-201ENST00000291074 PIM1P11309 404 aaPredicted RBP19.87■□□□□ 0.77
VPS53-201ENST00000291074 CLCN7P51798 805 aa19.87■□□□□ 0.77
VPS53-201ENST00000291074 TRAP1Q12931 704 aaKnown RBP19.87■□□□□ 0.77
VPS53-201ENST00000291074 NRF1Q16656 503 aa19.87■□□□□ 0.77
VPS53-201ENST00000291074 MAP7D1Q3KQU3 841 aa19.87■□□□□ 0.77
VPS53-201ENST00000291074 REM2Q8IYK8 340 aaPredicted RBP19.87■□□□□ 0.77
VPS53-201ENST00000291074 MARVELD2Q8N4S9 558 aa19.87■□□□□ 0.77
VPS53-201ENST00000291074 HJURPQ8NCD3 748 aaPredicted RBP19.87■□□□□ 0.77
VPS53-201ENST00000291074 TOP1MTQ969P6 601 aa19.87■□□□□ 0.77
VPS53-201ENST00000291074 VPS33AQ96AX1 596 aa19.87■□□□□ 0.77
VPS53-201ENST00000291074 TMEM169Q96HH4 297 aa19.87■□□□□ 0.77
VPS53-201ENST00000291074 P2RY12Q9H244 342 aa19.87■□□□□ 0.77
VPS53-201ENST00000291074 EVLQ9UI08 416 aaPredicted RBP19.87■□□□□ 0.77
VPS53-201ENST00000291074 PIKFYVEQ9Y2I7 2098 aa19.86■□□□□ 0.77
VPS53-201ENST00000291074 BBIP1A8MTZ0 92 aa19.86■□□□□ 0.77
VPS53-201ENST00000291074 E2F3O00716 465 aa19.86■□□□□ 0.77
VPS53-201ENST00000291074 PFDN6O15212 129 aa19.86■□□□□ 0.77
VPS53-201ENST00000291074 DENRO43583 198 aaKnown RBP19.86■□□□□ 0.77
VPS53-201ENST00000291074 PTGER3P43115 390 aa19.86■□□□□ 0.77
VPS53-201ENST00000291074 CLCN4P51793 760 aa19.86■□□□□ 0.77
VPS53-201ENST00000291074 TGFBIQ15582 683 aa19.86■□□□□ 0.77
VPS53-201ENST00000291074 INO80DQ53TQ3 878 aaPredicted RBP19.86■□□□□ 0.77
VPS53-201ENST00000291074 AMIGO2Q86SJ2 522 aa19.86■□□□□ 0.77
VPS53-201ENST00000291074 CDYL2Q8N8U2 506 aa19.86■□□□□ 0.77
VPS53-201ENST00000291074 CATSPER1Q8NEC5 780 aa19.86■□□□□ 0.77
VPS53-201ENST00000291074 TRAPPC9Q96Q05 1148 aa19.86■□□□□ 0.77
VPS53-201ENST00000291074 BOCQ9BWV1 1114 aa19.86■□□□□ 0.77
VPS53-201ENST00000291074 C1QTNF3Q9BXJ4 246 aa19.86■□□□□ 0.77
VPS53-201ENST00000291074 NDUFAF1Q9Y375 327 aa19.86■□□□□ 0.77
VPS53-201ENST00000291074 SNX13Q9Y5W8 968 aa19.86■□□□□ 0.77
VPS53-201ENST00000291074 SLC30A1Q9Y6M5 507 aa19.86■□□□□ 0.77
VPS53-201ENST00000291074 GRIA3P42263 894 aa19.86■□□□□ 0.77
VPS53-201ENST00000291074 RPL26P61254 145 aaKnown RBP19.86■□□□□ 0.77
VPS53-201ENST00000291074 BIRC2Q13490 618 aa19.86■□□□□ 0.77
VPS53-201ENST00000291074 AARS2Q5JTZ9 985 aaKnown RBP19.86■□□□□ 0.77
VPS53-201ENST00000291074 ZNF783Q6ZMS7 281 aa19.86■□□□□ 0.77
VPS53-201ENST00000291074 DHFR2Q86XF0 187 aa19.86■□□□□ 0.77
VPS53-201ENST00000291074 PIH1D2Q8WWB5 315 aa19.86■□□□□ 0.77
VPS53-201ENST00000291074 EME1Q96AY2 570 aa19.86■□□□□ 0.77
VPS53-201ENST00000291074 HBEGFQ99075 208 aa19.86■□□□□ 0.77
VPS53-201ENST00000291074 SLC52A3Q9NQ40 469 aa19.86■□□□□ 0.77
VPS53-201ENST00000291074 HACD3Q9P035 362 aa19.86■□□□□ 0.77
VPS53-201ENST00000291074 EGFL7Q9UHF1 273 aa19.86■□□□□ 0.77
VPS53-201ENST00000291074 CNOT6Q9ULM6 557 aaKnown RBP19.86■□□□□ 0.77
VPS53-201ENST00000291074 CLEC4EQ9ULY5 219 aa19.86■□□□□ 0.77
VPS53-201ENST00000291074 INSL5Q9Y5Q6 135 aa19.86■□□□□ 0.77
VPS53-201ENST00000291074 PDE4DIPQ5VU43 2346 aa19.85■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms