RNA–Protein interactions for RNA: ENST00000271628.8

SF3B4-201, Transcript of splicing factor 3b subunit 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B4, Length 2,085 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B4-201ENST00000271628 DUSP6Q16828 381 aa15.18■□□□□ 0.02
SF3B4-201ENST00000271628 CRTC1Q6UUV9 634 aa15.18■□□□□ 0.02
SF3B4-201ENST00000271628 ADGRD2Q7Z7M1 963 aa15.18■□□□□ 0.02
SF3B4-201ENST00000271628 SERPINA9Q86WD7 417 aa15.18■□□□□ 0.02
SF3B4-201ENST00000271628 MYLK4Q86YV6 388 aaPredicted RBP15.18■□□□□ 0.02
SF3B4-201ENST00000271628 NAT16Q8N8M0 369 aa15.18■□□□□ 0.02
SF3B4-201ENST00000271628 MCCC1Q96RQ3 725 aaPredicted RBP15.18■□□□□ 0.02
SF3B4-201ENST00000271628 ZNF184Q99676 751 aaPredicted RBP15.18■□□□□ 0.02
SF3B4-201ENST00000271628 NUF2Q9BZD4 464 aa15.18■□□□□ 0.02
SF3B4-201ENST00000271628 SFXN1Q9H9B4 322 aa15.18■□□□□ 0.02
SF3B4-201ENST00000271628 MRGBPQ9NV56 204 aa15.18■□□□□ 0.02
SF3B4-201ENST00000271628 GTSE1Q9NYZ3 720 aa15.18■□□□□ 0.02
SF3B4-201ENST00000271628 SLC7A8Q9UHI5 535 aa15.18■□□□□ 0.02
SF3B4-201ENST00000271628 MYO7AQ13402 2215 aa15.18■□□□□ 0.02
SF3B4-201ENST00000271628 TRBV5-4A0A0C4DH59 114 aa15.18■□□□□ 0.02
SF3B4-201ENST00000271628 NPIPB15A6NHN6 443 aaPredicted RBP15.18■□□□□ 0.02
SF3B4-201ENST00000271628 NIPSNAP2O75323 286 aa15.18■□□□□ 0.02
SF3B4-201ENST00000271628 ADH1CP00326 375 aa15.18■□□□□ 0.02
SF3B4-201ENST00000271628 BPIP17213 487 aa15.18■□□□□ 0.02
SF3B4-201ENST00000271628 CPOXP36551 454 aa15.18■□□□□ 0.02
SF3B4-201ENST00000271628 DGKGP49619 791 aa15.18■□□□□ 0.02
SF3B4-201ENST00000271628 OR4D1Q15615 310 aa15.18■□□□□ 0.02
SF3B4-201ENST00000271628 TMEM215Q68D42 235 aa15.18■□□□□ 0.02
SF3B4-201ENST00000271628 TMC5Q6UXY8 1006 aa15.18■□□□□ 0.02
SF3B4-201ENST00000271628 GDPD4Q6W3E5 623 aa15.18■□□□□ 0.02
SF3B4-201ENST00000271628 RIPOR1Q6ZS17 1223 aa15.18■□□□□ 0.02
SF3B4-201ENST00000271628 Q6ZVU0 165 aa15.18■□□□□ 0.02
SF3B4-201ENST00000271628 CUZD1Q86UP6 607 aa15.18■□□□□ 0.02
SF3B4-201ENST00000271628 OR2A12Q8NGT7 310 aa15.18■□□□□ 0.02
SF3B4-201ENST00000271628 CD200R1Q8TD46 325 aa15.18■□□□□ 0.02
SF3B4-201ENST00000271628 WFIKKN2Q8TEU8 576 aa15.18■□□□□ 0.02
SF3B4-201ENST00000271628 PANX3Q96QZ0 392 aa15.18■□□□□ 0.02
SF3B4-201ENST00000271628 SHCBP1LQ9BZQ2 653 aa15.18■□□□□ 0.02
SF3B4-201ENST00000271628 GSTO2Q9H4Y5 243 aa15.18■□□□□ 0.02
SF3B4-201ENST00000271628 GNPTGQ9UJJ9 305 aa15.18■□□□□ 0.02
SF3B4-201ENST00000271628 TMCO1Q9UM00 188 aa15.18■□□□□ 0.02
SF3B4-201ENST00000271628 DHRS7Q9Y394 339 aa15.18■□□□□ 0.02
SF3B4-201ENST00000271628 MTF2Q9Y483 593 aaPredicted RBP15.18■□□□□ 0.02
SF3B4-201ENST00000271628 ZNF106Q9H2Y7 1883 aaKnown RBP15.18■□□□□ 0.02
SF3B4-201ENST00000271628 DPPA5A6NC42 116 aa15.17■□□□□ 0.02
SF3B4-201ENST00000271628 GAPDHSO14556 408 aaPredicted RBP15.17■□□□□ 0.02
SF3B4-201ENST00000271628 SKAP2O75563 359 aaPredicted RBP15.17■□□□□ 0.02
SF3B4-201ENST00000271628 ASLP04424 464 aa15.17■□□□□ 0.02
SF3B4-201ENST00000271628 UGT2B4P06133 528 aa15.17■□□□□ 0.02
SF3B4-201ENST00000271628 SRPRAP08240 638 aaKnown RBP15.17■□□□□ 0.02
SF3B4-201ENST00000271628 ADH5P11766 374 aa15.17■□□□□ 0.02
SF3B4-201ENST00000271628 MTHFD2P13995 350 aa15.17■□□□□ 0.02
SF3B4-201ENST00000271628 GFAPP14136 432 aa15.17■□□□□ 0.02
SF3B4-201ENST00000271628 ANPEPP15144 967 aa15.17■□□□□ 0.02
SF3B4-201ENST00000271628 ACRV1P26436 265 aa15.17■□□□□ 0.02
SF3B4-201ENST00000271628 ADSLP30566 484 aaPredicted RBP15.17■□□□□ 0.02
SF3B4-201ENST00000271628 SATB1Q01826 763 aa15.17■□□□□ 0.02
SF3B4-201ENST00000271628 GEN1Q17RS7 908 aa15.17■□□□□ 0.02
SF3B4-201ENST00000271628 C1orf146Q5VVC0 180 aa15.17■□□□□ 0.02
SF3B4-201ENST00000271628 PTRHD1Q6GMV3 140 aaKnown RBP15.17■□□□□ 0.02
SF3B4-201ENST00000271628 AAGABQ6PD74 315 aa15.17■□□□□ 0.02
SF3B4-201ENST00000271628 BRAT1Q6PJG6 821 aa15.17■□□□□ 0.02
SF3B4-201ENST00000271628 SIDT2Q8NBJ9 832 aaKnown RBP15.17■□□□□ 0.02
SF3B4-201ENST00000271628 PDLIM5Q96HC4 596 aaKnown RBP15.17■□□□□ 0.02
SF3B4-201ENST00000271628 HEPHQ9BQS7 1158 aa15.17■□□□□ 0.02
SF3B4-201ENST00000271628 BRD9Q9H8M2 597 aa15.17■□□□□ 0.02
SF3B4-201ENST00000271628 CRLS1Q9UJA2 301 aa15.17■□□□□ 0.02
SF3B4-201ENST00000271628 SCN8AQ9UQD0 1980 aa15.16■□□□□ 0.02
SF3B4-201ENST00000271628 AGAP14A8MT82 685 aa15.16■□□□□ 0.02
SF3B4-201ENST00000271628 E9PBE3 544 aa15.16■□□□□ 0.02
SF3B4-201ENST00000271628 SLC22A2O15244 555 aa15.16■□□□□ 0.02
SF3B4-201ENST00000271628 HOXC11O43248 304 aaPredicted RBP15.16■□□□□ 0.02
SF3B4-201ENST00000271628 KLHL41O60662 606 aa15.16■□□□□ 0.02
SF3B4-201ENST00000271628 LINGO3P0C6S8 592 aa15.16■□□□□ 0.02
SF3B4-201ENST00000271628 EPHA3P29320 983 aa15.16■□□□□ 0.02
SF3B4-201ENST00000271628 PRDX6P30041 224 aa15.16■□□□□ 0.02
SF3B4-201ENST00000271628 NRIP1P48552 1158 aa15.16■□□□□ 0.02
SF3B4-201ENST00000271628 PTSQ03393 145 aa15.16■□□□□ 0.02
SF3B4-201ENST00000271628 SHHQ15465 462 aa15.16■□□□□ 0.02
SF3B4-201ENST00000271628 GSTA3Q16772 222 aa15.16■□□□□ 0.02
SF3B4-201ENST00000271628 PFKFB4Q16877 469 aa15.16■□□□□ 0.02
SF3B4-201ENST00000271628 LSM12Q3MHD2 195 aaKnown RBP15.16■□□□□ 0.02
SF3B4-201ENST00000271628 LRRC66Q68CR7 880 aa15.16■□□□□ 0.02
SF3B4-201ENST00000271628 TMEM154Q6P9G4 183 aa15.16■□□□□ 0.02
SF3B4-201ENST00000271628 PTGR2Q8N8N7 351 aaPredicted RBP15.16■□□□□ 0.02
SF3B4-201ENST00000271628 CEP70Q8NHQ1 597 aa15.16■□□□□ 0.02
SF3B4-201ENST00000271628 LRIG1Q96JA1 1093 aa15.16■□□□□ 0.02
SF3B4-201ENST00000271628 MAELQ96JY0 434 aaKnown RBP15.16■□□□□ 0.02
SF3B4-201ENST00000271628 PLEKHG4BQ96PX9 1271 aa15.16■□□□□ 0.02
SF3B4-201ENST00000271628 OR52B2Q96RD2 323 aa15.16■□□□□ 0.02
SF3B4-201ENST00000271628 TRANK1O15050 2925 aa15.16■□□□□ 0.02
SF3B4-201ENST00000271628 A0A088AWK7 358 aa15.16■□□□□ 0.02
SF3B4-201ENST00000271628 GOLGA8QA0A0J9YX86 632 aa15.16■□□□□ 0.02
SF3B4-201ENST00000271628 GOLGA8OA6NCC3 632 aa15.16■□□□□ 0.02
SF3B4-201ENST00000271628 GOLGA8NF8WBI6 632 aa15.16■□□□□ 0.02
SF3B4-201ENST00000271628 UBXN8O00124 270 aa15.16■□□□□ 0.02
SF3B4-201ENST00000271628 BTN3A1O00481 513 aa15.16■□□□□ 0.02
SF3B4-201ENST00000271628 DCXO43602 365 aa15.16■□□□□ 0.02
SF3B4-201ENST00000271628 CYP17A1P05093 508 aa15.16■□□□□ 0.02
SF3B4-201ENST00000271628 CHRM1P11229 460 aaPredicted RBP15.16■□□□□ 0.02
SF3B4-201ENST00000271628 CLCN7P51798 805 aa15.16■□□□□ 0.02
SF3B4-201ENST00000271628 COPAP53621 1224 aa15.16■□□□□ 0.02
SF3B4-201ENST00000271628 EML3Q32P44 896 aa15.16■□□□□ 0.02
SF3B4-201ENST00000271628 UNC50Q53HI1 259 aa15.16■□□□□ 0.02
SF3B4-201ENST00000271628 TXNDC11Q6PKC3 985 aa15.16■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms