RNA–Protein interactions for RNA: ENST00000253024.9

TRIM28-201, Transcript of tripartite motif containing 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM28, Length 2,960 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-201ENST00000253024 DLGAP1O14490 977 aa21.13■□□□□ 0.97
TRIM28-201ENST00000253024 PIM1P11309 404 aaPredicted RBP21.13■□□□□ 0.97
TRIM28-201ENST00000253024 CTBSQ01459 385 aa21.13■□□□□ 0.97
TRIM28-201ENST00000253024 TRIP4Q15650 581 aaPredicted RBP21.13■□□□□ 0.97
TRIM28-201ENST00000253024 RASAL3Q86YV0 1011 aa21.13■□□□□ 0.97
TRIM28-201ENST00000253024 COLGALT2Q8IYK4 626 aa21.13■□□□□ 0.97
TRIM28-201ENST00000253024 RNF217Q8TC41 542 aa21.13■□□□□ 0.97
TRIM28-201ENST00000253024 PLEKHG4BQ96PX9 1271 aa21.13■□□□□ 0.97
TRIM28-201ENST00000253024 ZFYVE28Q9HCC9 887 aa21.13■□□□□ 0.97
TRIM28-201ENST00000253024 SCUBE2Q9NQ36 999 aa21.13■□□□□ 0.97
TRIM28-201ENST00000253024 EXD2Q9NVH0 621 aa21.13■□□□□ 0.97
TRIM28-201ENST00000253024 RSL24D1Q9UHA3 163 aaKnown RBP21.13■□□□□ 0.97
TRIM28-201ENST00000253024 UTS2RQ9UKP6 389 aa21.13■□□□□ 0.97
TRIM28-201ENST00000253024 PCDHB9Q9Y5E1 797 aa21.13■□□□□ 0.97
TRIM28-201ENST00000253024 FGF1P05230 155 aa21.12■□□□□ 0.97
TRIM28-201ENST00000253024 HOXD9P28356 352 aaPredicted RBP21.12■□□□□ 0.97
TRIM28-201ENST00000253024 HSPA13P48723 471 aa21.12■□□□□ 0.97
TRIM28-201ENST00000253024 NFE2Q16621 373 aaPredicted RBP21.12■□□□□ 0.97
TRIM28-201ENST00000253024 GPR107Q5VW38 600 aa21.12■□□□□ 0.97
TRIM28-201ENST00000253024 KANK2Q63ZY3 851 aa21.12■□□□□ 0.97
TRIM28-201ENST00000253024 TDRD1Q9BXT4 1180 aaKnown RBP21.12■□□□□ 0.97
TRIM28-201ENST00000253024 TDRKHQ9Y2W6 561 aaKnown RBP21.12■□□□□ 0.97
TRIM28-201ENST00000253024 FCF1Q9Y324 198 aaKnown RBP21.12■□□□□ 0.97
TRIM28-201ENST00000253024 DNAH14Q0VDD8 3507 aa21.12■□□□□ 0.97
TRIM28-201ENST00000253024 K7ERQ8 282 aa21.12■□□□□ 0.97
TRIM28-201ENST00000253024 CLOCKO15516 846 aa21.12■□□□□ 0.97
TRIM28-201ENST00000253024 CA5AP35218 305 aa21.12■□□□□ 0.97
TRIM28-201ENST00000253024 OXCT1P55809 520 aa21.12■□□□□ 0.97
TRIM28-201ENST00000253024 PIGFQ07326 219 aa21.12■□□□□ 0.97
TRIM28-201ENST00000253024 MBOAT1Q6ZNC8 495 aa21.12■□□□□ 0.97
TRIM28-201ENST00000253024 PARP8Q8N3A8 854 aa21.12■□□□□ 0.97
TRIM28-201ENST00000253024 RPF2Q9H7B2 306 aaKnown RBP21.12■□□□□ 0.97
TRIM28-201ENST00000253024 UBA2Q9UBT2 640 aaPredicted RBP21.12■□□□□ 0.97
TRIM28-201ENST00000253024 AFF4Q9UHB7 1163 aaKnown RBP21.12■□□□□ 0.97
TRIM28-201ENST00000253024 TRMT6Q9UJA5 497 aaKnown RBP21.12■□□□□ 0.97
TRIM28-201ENST00000253024 MTMR11A4FU01 709 aa21.12■□□□□ 0.97
TRIM28-201ENST00000253024 PFDN1O60925 122 aa21.12■□□□□ 0.97
TRIM28-201ENST00000253024 ZNF189O75820 626 aaPredicted RBP21.12■□□□□ 0.97
TRIM28-201ENST00000253024 WISP3O95389 354 aaPredicted RBP21.12■□□□□ 0.97
TRIM28-201ENST00000253024 NDST3O95803 873 aa21.12■□□□□ 0.97
TRIM28-201ENST00000253024 CAPN1P07384 714 aa21.12■□□□□ 0.97
TRIM28-201ENST00000253024 CKBP12277 381 aa21.12■□□□□ 0.97
TRIM28-201ENST00000253024 INPP5AQ14642 412 aa21.12■□□□□ 0.97
TRIM28-201ENST00000253024 NR6A1Q15406 480 aa21.12■□□□□ 0.97
TRIM28-201ENST00000253024 LETMD1Q6P1Q0 360 aa21.12■□□□□ 0.97
TRIM28-201ENST00000253024 FAM151BQ6UXP7 276 aa21.12■□□□□ 0.97
TRIM28-201ENST00000253024 ADGRG5Q8IZF4 528 aa21.12■□□□□ 0.97
TRIM28-201ENST00000253024 FBXO30Q8TB52 745 aa21.12■□□□□ 0.97
TRIM28-201ENST00000253024 METTL6Q8TCB7 284 aa21.12■□□□□ 0.97
TRIM28-201ENST00000253024 BOCQ9BWV1 1114 aa21.12■□□□□ 0.97
TRIM28-201ENST00000253024 GALNT8Q9NY28 637 aa21.12■□□□□ 0.97
TRIM28-201ENST00000253024 XIRP2A4UGR9 3374 aa21.11■□□□□ 0.97
TRIM28-201ENST00000253024 PAPSS2O95340 614 aaPredicted RBP21.11■□□□□ 0.97
TRIM28-201ENST00000253024 ELK4P28324 431 aa21.11■□□□□ 0.97
TRIM28-201ENST00000253024 PTGR1Q14914 329 aa21.11■□□□□ 0.97
TRIM28-201ENST00000253024 SLC14A2Q15849 920 aa21.11■□□□□ 0.97
TRIM28-201ENST00000253024 TRMOQ9BU70 441 aa21.11■□□□□ 0.97
TRIM28-201ENST00000253024 FARSBQ9NSD9 589 aaKnown RBP21.11■□□□□ 0.97
TRIM28-201ENST00000253024 PNPLA3Q9NST1 481 aa21.11■□□□□ 0.97
TRIM28-201ENST00000253024 IRAK4Q9NWZ3 460 aa21.11■□□□□ 0.97
TRIM28-201ENST00000253024 ZNHIT2Q9UHR6 403 aa21.11■□□□□ 0.97
TRIM28-201ENST00000253024 POLR3HQ9Y535 204 aaPredicted RBP21.11■□□□□ 0.97
TRIM28-201ENST00000253024 RAI2Q9Y5P3 530 aa21.11■□□□□ 0.97
TRIM28-201ENST00000253024 MYO7AQ13402 2215 aa21.11■□□□□ 0.97
TRIM28-201ENST00000253024 GREB1Q4ZG55 1949 aa21.11■□□□□ 0.97
TRIM28-201ENST00000253024 H0Y626 953 aa21.11■□□□□ 0.97
TRIM28-201ENST00000253024 STX7O15400 261 aaKnown RBP21.11■□□□□ 0.97
TRIM28-201ENST00000253024 TRIM16O95361 564 aa21.11■□□□□ 0.97
TRIM28-201ENST00000253024 B3GALT4O96024 378 aa21.11■□□□□ 0.97
TRIM28-201ENST00000253024 KLKB1P03952 638 aa21.11■□□□□ 0.97
TRIM28-201ENST00000253024 G6PDP11413 515 aa21.11■□□□□ 0.97
TRIM28-201ENST00000253024 TYMPP19971 482 aa21.11■□□□□ 0.97
TRIM28-201ENST00000253024 HLA-DPA1P20036 260 aa21.11■□□□□ 0.97
TRIM28-201ENST00000253024 HMGCS1Q01581 520 aa21.11■□□□□ 0.97
TRIM28-201ENST00000253024 FOXD4Q12950 439 aaPredicted RBP21.11■□□□□ 0.97
TRIM28-201ENST00000253024 ARMC12Q5T9G4 340 aa21.11■□□□□ 0.97
TRIM28-201ENST00000253024 NANOGP8Q6NSW7 305 aa21.11■□□□□ 0.97
TRIM28-201ENST00000253024 BLOC1S3Q6QNY0 202 aa21.11■□□□□ 0.97
TRIM28-201ENST00000253024 GPSM1Q86YR5 675 aa21.11■□□□□ 0.97
TRIM28-201ENST00000253024 FAM86B1Q8N7N1 296 aa21.11■□□□□ 0.97
TRIM28-201ENST00000253024 NANOGQ9H9S0 305 aa21.11■□□□□ 0.97
TRIM28-201ENST00000253024 CCM2LQ9NUG4 571 aaPredicted RBP21.11■□□□□ 0.97
TRIM28-201ENST00000253024 GPR45Q9Y5Y3 372 aa21.11■□□□□ 0.97
TRIM28-201ENST00000253024 OAS3Q9Y6K5 1087 aaKnown RBP21.11■□□□□ 0.97
TRIM28-201ENST00000253024 ADAMTS4O75173 837 aa21.1■□□□□ 0.97
TRIM28-201ENST00000253024 SLC22A3O75751 556 aa21.1■□□□□ 0.97
TRIM28-201ENST00000253024 RSL1D1O76021 490 aaKnown RBP21.1■□□□□ 0.97
TRIM28-201ENST00000253024 ERVPABLB-1P60509 514 aa21.1■□□□□ 0.97
TRIM28-201ENST00000253024 MERTKQ12866 999 aa21.1■□□□□ 0.97
TRIM28-201ENST00000253024 LRRC73Q5JTD7 316 aa21.1■□□□□ 0.97
TRIM28-201ENST00000253024 RNF219Q5W0B1 726 aaPredicted RBP21.1■□□□□ 0.97
TRIM28-201ENST00000253024 FRA10AC1Q70Z53 315 aa21.1■□□□□ 0.97
TRIM28-201ENST00000253024 TEX26Q8N6G2 289 aa21.1■□□□□ 0.97
TRIM28-201ENST00000253024 FIG4Q92562 907 aa21.1■□□□□ 0.97
TRIM28-201ENST00000253024 TFAP2CQ92754 450 aa21.1■□□□□ 0.97
TRIM28-201ENST00000253024 TMEM125Q96AQ2 219 aa21.1■□□□□ 0.97
TRIM28-201ENST00000253024 GPATCH1Q9BRR8 931 aaKnown RBP21.1■□□□□ 0.97
TRIM28-201ENST00000253024 CLK4Q9HAZ1 481 aaKnown RBP21.1■□□□□ 0.97
TRIM28-201ENST00000253024 SDR39U1Q9NRG7 319 aaPredicted RBP21.1■□□□□ 0.97
TRIM28-201ENST00000253024 SUN2Q9UH99 717 aa21.1■□□□□ 0.97
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms