RNA–Protein interactions for RNA: ENST00000642021.1

PHGDH-233, Transcript of phosphoglycerate dehydrogenase, human

Gene PHGDH, Length 2,794 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PHGDH-233	ENST00000642021	NLRC5	Q86WI3	1866 aa		13.74	□□□□□ -0.21
PHGDH-233	ENST00000642021	IGLV3-10	A0A075B6K4	115 aa		13.74	□□□□□ -0.21
PHGDH-233	ENST00000642021	GPR182	O15218	404 aa		13.74	□□□□□ -0.21
PHGDH-233	ENST00000642021	ECI2	O75521	394 aa		13.74	□□□□□ -0.21
PHGDH-233	ENST00000642021	RPP40	O75818	363 aa	Known RBP	13.74	□□□□□ -0.21
PHGDH-233	ENST00000642021	CYBB	P04839	570 aa		13.74	□□□□□ -0.21
PHGDH-233	ENST00000642021	IDO1	P14902	403 aa		13.74	□□□□□ -0.21
PHGDH-233	ENST00000642021	CASP2	P42575	452 aa		13.74	□□□□□ -0.21
PHGDH-233	ENST00000642021	CDKN1C	P49918	316 aa	Predicted RBP	13.74	□□□□□ -0.21
PHGDH-233	ENST00000642021	MGAT3	Q09327	533 aa		13.74	□□□□□ -0.21
PHGDH-233	ENST00000642021	TMED1	Q13445	227 aa		13.74	□□□□□ -0.21
PHGDH-233	ENST00000642021	SERINC3	Q13530	473 aa		13.74	□□□□□ -0.21
PHGDH-233	ENST00000642021	CYBRD1	Q53TN4	286 aa		13.74	□□□□□ -0.21
PHGDH-233	ENST00000642021	GET4	Q7L5D6	327 aa	Predicted RBP	13.74	□□□□□ -0.21
PHGDH-233	ENST00000642021	FBXO39	Q8N4B4	442 aa		13.74	□□□□□ -0.21
PHGDH-233	ENST00000642021	OR2T11	Q8NH01	316 aa		13.74	□□□□□ -0.21
PHGDH-233	ENST00000642021	MAGEE2	Q8TD90	523 aa	Predicted RBP	13.74	□□□□□ -0.21
PHGDH-233	ENST00000642021	ABTB1	Q969K4	478 aa	Predicted RBP	13.74	□□□□□ -0.21
PHGDH-233	ENST00000642021	TBRG4	Q969Z0	631 aa	Known RBP eCLIP	13.74	□□□□□ -0.21	2e-7	■■■■■ 60.5
PHGDH-233	ENST00000642021	KIAA1191	Q96A73	305 aa		13.74	□□□□□ -0.21
PHGDH-233	ENST00000642021	CDKN2AIPNL	Q96HQ2	116 aa		13.74	□□□□□ -0.21
PHGDH-233	ENST00000642021	C1orf50	Q9BV19	199 aa		13.74	□□□□□ -0.21
PHGDH-233	ENST00000642021	TRIM15	Q9C019	465 aa		13.74	□□□□□ -0.21
PHGDH-233	ENST00000642021	RPF2	Q9H7B2	306 aa	Known RBP	13.74	□□□□□ -0.21
PHGDH-233	ENST00000642021	CATSPERZ	Q9NTU4	200 aa		13.74	□□□□□ -0.21
PHGDH-233	ENST00000642021	INTS7	Q9NVH2	962 aa	Known RBP	13.74	□□□□□ -0.21
PHGDH-233	ENST00000642021	TUBA8	Q9NY65	449 aa	Predicted RBP	13.74	□□□□□ -0.21
PHGDH-233	ENST00000642021	CIDEB	Q9UHD4	219 aa		13.74	□□□□□ -0.21
PHGDH-233	ENST00000642021	RNF112	Q9ULX5	631 aa		13.74	□□□□□ -0.21
PHGDH-233	ENST00000642021	FADS3	Q9Y5Q0	445 aa		13.74	□□□□□ -0.21
PHGDH-233	ENST00000642021		A0A0U1RQF3	1178 aa		13.74	□□□□□ -0.21
PHGDH-233	ENST00000642021	TNPO2	O14787	897 aa	Known RBP	13.74	□□□□□ -0.21
PHGDH-233	ENST00000642021	CLOCK	O15516	846 aa		13.74	□□□□□ -0.21
PHGDH-233	ENST00000642021	RAMP2	O60895	175 aa		13.74	□□□□□ -0.21
PHGDH-233	ENST00000642021	SOAT2	O75908	522 aa		13.74	□□□□□ -0.21
PHGDH-233	ENST00000642021	SNAP29	O95721	258 aa		13.74	□□□□□ -0.21
PHGDH-233	ENST00000642021	PRR35	P0CG20	571 aa		13.74	□□□□□ -0.21
PHGDH-233	ENST00000642021	IL12A	P29459	219 aa		13.74	□□□□□ -0.21
PHGDH-233	ENST00000642021	RFC2	P35250	354 aa		13.74	□□□□□ -0.21
PHGDH-233	ENST00000642021	PLCL1	Q15111	1095 aa		13.74	□□□□□ -0.21
PHGDH-233	ENST00000642021	SYVN1	Q86TM6	617 aa		13.74	□□□□□ -0.21
PHGDH-233	ENST00000642021	BRSK1	Q8TDC3	778 aa		13.74	□□□□□ -0.21
PHGDH-233	ENST00000642021	SEPHS2	Q99611	448 aa		13.74	□□□□□ -0.21
PHGDH-233	ENST00000642021	ADAM2	Q99965	735 aa		13.74	□□□□□ -0.21
PHGDH-233	ENST00000642021	NAA50	Q9GZZ1	169 aa	Known RBP	13.74	□□□□□ -0.21
PHGDH-233	ENST00000642021	DNAAF2	Q9NVR5	837 aa	Known RBP	13.74	□□□□□ -0.21
PHGDH-233	ENST00000642021	PTBP2	Q9UKA9	531 aa	Known RBP	13.74	□□□□□ -0.21
PHGDH-233	ENST00000642021	SCML2	Q9UQR0	700 aa		13.74	□□□□□ -0.21
PHGDH-233	ENST00000642021	PTPRD	P23468	1912 aa		13.74	□□□□□ -0.21
PHGDH-233	ENST00000642021	KERA	O60938	352 aa		13.73	□□□□□ -0.21
PHGDH-233	ENST00000642021	RHOBTB1	O94844	696 aa		13.73	□□□□□ -0.21
PHGDH-233	ENST00000642021	PBX3	P40426	434 aa		13.73	□□□□□ -0.21
PHGDH-233	ENST00000642021	RCAN2	Q14206	197 aa		13.73	□□□□□ -0.21
PHGDH-233	ENST00000642021	SPRYD7	Q5W111	196 aa		13.73	□□□□□ -0.21
PHGDH-233	ENST00000642021	DHRS4L2	Q6PKH6	230 aa		13.73	□□□□□ -0.21
PHGDH-233	ENST00000642021	ZNF280B	Q86YH2	543 aa		13.73	□□□□□ -0.21
PHGDH-233	ENST00000642021	STAG3L4	Q8TBR4	150 aa		13.73	□□□□□ -0.21
PHGDH-233	ENST00000642021	FUBP1	Q96AE4	644 aa	Known RBP	13.73	□□□□□ -0.21
PHGDH-233	ENST00000642021	ZNF599	Q96NL3	588 aa		13.73	□□□□□ -0.21
PHGDH-233	ENST00000642021	RPRD1A	Q96P16	312 aa	Predicted RBP	13.73	□□□□□ -0.21
PHGDH-233	ENST00000642021	CXorf21	Q9HAI6	301 aa		13.73	□□□□□ -0.21
PHGDH-233	ENST00000642021	SPO11	Q9Y5K1	396 aa		13.73	□□□□□ -0.21
PHGDH-233	ENST00000642021	C1R	P00736	705 aa		13.73	□□□□□ -0.21
PHGDH-233	ENST00000642021	OR1E1	P30953	314 aa		13.73	□□□□□ -0.21
PHGDH-233	ENST00000642021	THPO	P40225	353 aa		13.73	□□□□□ -0.21
PHGDH-233	ENST00000642021	ESRRG	P62508	458 aa		13.73	□□□□□ -0.21
PHGDH-233	ENST00000642021	IL10RB	Q08334	325 aa		13.73	□□□□□ -0.21
PHGDH-233	ENST00000642021	PLA2G4E	Q3MJ16	856 aa		13.73	□□□□□ -0.21
PHGDH-233	ENST00000642021	ANKDD1A	Q495B1	522 aa		13.73	□□□□□ -0.21
PHGDH-233	ENST00000642021	ANKS6	Q68DC2	871 aa		13.73	□□□□□ -0.21
PHGDH-233	ENST00000642021	NANOGP8	Q6NSW7	305 aa		13.73	□□□□□ -0.21
PHGDH-233	ENST00000642021	SERINC5	Q86VE9	423 aa		13.73	□□□□□ -0.21
PHGDH-233	ENST00000642021	SEPT8	Q92599	483 aa		13.73	□□□□□ -0.21
PHGDH-233	ENST00000642021	KCTD14	Q9BQ13	255 aa	Predicted RBP	13.73	□□□□□ -0.21
PHGDH-233	ENST00000642021	POLR1E	Q9GZS1	481 aa	Known RBP	13.73	□□□□□ -0.21
PHGDH-233	ENST00000642021	NANOG	Q9H9S0	305 aa		13.73	□□□□□ -0.21
PHGDH-233	ENST00000642021	AIG1	Q9NVV5	245 aa		13.73	□□□□□ -0.21
PHGDH-233	ENST00000642021		Q9Y3F1	56 aa		13.73	□□□□□ -0.21
PHGDH-233	ENST00000642021	ZFC3H1	O60293	1989 aa	Known RBP	13.73	□□□□□ -0.21
PHGDH-233	ENST00000642021	ANKRD12	Q6UB98	2062 aa		13.73	□□□□□ -0.21
PHGDH-233	ENST00000642021		A0A0D9SEW6	157 aa		13.72	□□□□□ -0.21
PHGDH-233	ENST00000642021	CRCP	O75575	148 aa		13.72	□□□□□ -0.21
PHGDH-233	ENST00000642021	GPI	P06744	558 aa		13.72	□□□□□ -0.21
PHGDH-233	ENST00000642021	RPS17	P08708	135 aa	Known RBP	13.72	□□□□□ -0.21
PHGDH-233	ENST00000642021	HRH2	P25021	359 aa		13.72	□□□□□ -0.21
PHGDH-233	ENST00000642021	TIGD2	Q4W5G0	525 aa		13.72	□□□□□ -0.21
PHGDH-233	ENST00000642021	TMTC4	Q5T4D3	741 aa		13.72	□□□□□ -0.21
PHGDH-233	ENST00000642021	GPR107	Q5VW38	600 aa		13.72	□□□□□ -0.21
PHGDH-233	ENST00000642021	OGFOD2	Q6N063	350 aa		13.72	□□□□□ -0.21
PHGDH-233	ENST00000642021	PTRH1	Q86Y79	214 aa	Known RBP	13.72	□□□□□ -0.21
PHGDH-233	ENST00000642021	GOLM1	Q8NBJ4	401 aa		13.72	□□□□□ -0.21
PHGDH-233	ENST00000642021	TRPV1	Q8NER1	839 aa		13.72	□□□□□ -0.21
PHGDH-233	ENST00000642021	BIRC7	Q96CA5	298 aa		13.72	□□□□□ -0.21
PHGDH-233	ENST00000642021	GPR21	Q99679	349 aa		13.72	□□□□□ -0.21
PHGDH-233	ENST00000642021	TRIM54	Q9BYV2	358 aa		13.72	□□□□□ -0.21
PHGDH-233	ENST00000642021	OSBPL6	Q9BZF3	934 aa		13.72	□□□□□ -0.21
PHGDH-233	ENST00000642021	POPDC3	Q9HBV1	291 aa		13.72	□□□□□ -0.21
PHGDH-233	ENST00000642021	DOCK4	Q8N1I0	1966 aa		13.72	□□□□□ -0.21
PHGDH-233	ENST00000642021	NPEPPSL1	A6NEC2	478 aa		13.72	□□□□□ -0.21
PHGDH-233	ENST00000642021	B4GAT1	O43505	415 aa		13.72	□□□□□ -0.21

Retrieved 100 of 20,778 RNA–protein pairs in 41.2 ms