RNA–Protein interactions for RNA: ENST00000635861.1

CLN3-241, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,404 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-241ENST00000635861 ZFXP17010 805 aaPredicted RBP18.23■□□□□ 0.51
CLN3-241ENST00000635861 UGT1A3P35503 534 aa18.23■□□□□ 0.51
CLN3-241ENST00000635861 ARHGAP25P42331 645 aa18.23■□□□□ 0.51
CLN3-241ENST00000635861 ARSDP51689 593 aa18.23■□□□□ 0.51
CLN3-241ENST00000635861 SLC9A4Q6AI14 798 aa18.23■□□□□ 0.51
CLN3-241ENST00000635861 ARHGAP22Q7Z5H3 698 aa18.23■□□□□ 0.51
CLN3-241ENST00000635861 PHYKPLQ8IUZ5 450 aa18.23■□□□□ 0.51
CLN3-241ENST00000635861 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP18.23■□□□□ 0.51
CLN3-241ENST00000635861 IL22RA1Q8N6P7 574 aa18.23■□□□□ 0.51
CLN3-241ENST00000635861 PLD5Q8N7P1 536 aa18.23■□□□□ 0.51
CLN3-241ENST00000635861 ART4Q93070 314 aa18.23■□□□□ 0.51
CLN3-241ENST00000635861 ZSCAN5AQ9BUG6 496 aa18.23■□□□□ 0.51
CLN3-241ENST00000635861 BRD8Q9H0E9 1235 aa18.23■□□□□ 0.51
CLN3-241ENST00000635861 ADNPQ9H2P0 1102 aa18.23■□□□□ 0.51
CLN3-241ENST00000635861 TSPY26PQ9H489 355 aa18.23■□□□□ 0.51
CLN3-241ENST00000635861 DEF6Q9H4E7 631 aa18.23■□□□□ 0.51
CLN3-241ENST00000635861 ZFYVE1Q9HBF4 777 aa18.23■□□□□ 0.51
CLN3-241ENST00000635861 MAGEE1Q9HCI5 957 aa18.23■□□□□ 0.51
CLN3-241ENST00000635861 B3GALT1Q9Y5Z6 326 aa18.23■□□□□ 0.51
CLN3-241ENST00000635861 OAS3Q9Y6K5 1087 aaKnown RBP18.23■□□□□ 0.51
CLN3-241ENST00000635861 A6NCN8 305 aa18.23■□□□□ 0.51
CLN3-241ENST00000635861 PPP1R12AO14974 1030 aaPredicted RBP18.23■□□□□ 0.51
CLN3-241ENST00000635861 ZIC2O95409 532 aaPredicted RBP18.23■□□□□ 0.51
CLN3-241ENST00000635861 PDK1Q15118 436 aa18.23■□□□□ 0.51
CLN3-241ENST00000635861 TBR1Q16650 682 aa18.23■□□□□ 0.51
CLN3-241ENST00000635861 ASTE1Q2TB18 679 aaPredicted RBP18.23■□□□□ 0.51
CLN3-241ENST00000635861 ZNF569Q5MCW4 686 aa18.23■□□□□ 0.51
CLN3-241ENST00000635861 CEACAM20Q6UY09 585 aa18.23■□□□□ 0.51
CLN3-241ENST00000635861 BMPERQ8N8U9 685 aa18.23■□□□□ 0.51
CLN3-241ENST00000635861 OR8K1Q8NGG5 319 aa18.23■□□□□ 0.51
CLN3-241ENST00000635861 TRAF3IP1Q8TDR0 691 aaPredicted RBP18.23■□□□□ 0.51
CLN3-241ENST00000635861 RAPGEF5Q92565 580 aa18.23■□□□□ 0.51
CLN3-241ENST00000635861 DNAJC7Q99615 494 aa18.23■□□□□ 0.51
CLN3-241ENST00000635861 EFHD1Q9BUP0 239 aa18.23■□□□□ 0.51
CLN3-241ENST00000635861 XPO4Q9C0E2 1151 aaKnown RBP18.23■□□□□ 0.51
CLN3-241ENST00000635861 UCK1Q9HA47 277 aa18.23■□□□□ 0.51
CLN3-241ENST00000635861 FBXO8Q9NRD0 319 aa18.23■□□□□ 0.51
CLN3-241ENST00000635861 TBC1D29Q9UFV1 150 aa18.23■□□□□ 0.51
CLN3-241ENST00000635861 LRRD1A4D1F6 860 aa18.22■□□□□ 0.51
CLN3-241ENST00000635861 LILRA5A6NI73 299 aa18.22■□□□□ 0.51
CLN3-241ENST00000635861 EFCAB7A8K855 629 aa18.22■□□□□ 0.51
CLN3-241ENST00000635861 KCNK1O00180 336 aa18.22■□□□□ 0.51
CLN3-241ENST00000635861 GRID2O43424 1007 aa18.22■□□□□ 0.51
CLN3-241ENST00000635861 MC2RQ01718 297 aa18.22■□□□□ 0.51
CLN3-241ENST00000635861 NFATC3Q12968 1075 aa18.22■□□□□ 0.51
CLN3-241ENST00000635861 LRRC38Q5VT99 294 aa18.22■□□□□ 0.51
CLN3-241ENST00000635861 NT5DC3Q86UY8 548 aa18.22■□□□□ 0.51
CLN3-241ENST00000635861 FAM129CQ86XR2 697 aa18.22■□□□□ 0.51
CLN3-241ENST00000635861 CPNE8Q86YQ8 564 aa18.22■□□□□ 0.51
CLN3-241ENST00000635861 RHOT2Q8IXI1 618 aa18.22■□□□□ 0.51
CLN3-241ENST00000635861 CACNA2D3Q8IZS8 1091 aa18.22■□□□□ 0.51
CLN3-241ENST00000635861 TRAM1L1Q8N609 369 aa18.22■□□□□ 0.51
CLN3-241ENST00000635861 CNTD1Q8N815 330 aa18.22■□□□□ 0.51
CLN3-241ENST00000635861 TRIM44Q96DX7 344 aaPredicted RBP18.22■□□□□ 0.51
CLN3-241ENST00000635861 IMP4Q96G21 291 aaKnown RBP18.22■□□□□ 0.51
CLN3-241ENST00000635861 CATSPER2Q96P56 530 aa18.22■□□□□ 0.51
CLN3-241ENST00000635861 TRIB3Q96RU7 358 aa18.22■□□□□ 0.51
CLN3-241ENST00000635861 SLC12A9Q9BXP2 914 aa18.22■□□□□ 0.51
CLN3-241ENST00000635861 MAK16Q9BXY0 300 aaKnown RBP18.22■□□□□ 0.51
CLN3-241ENST00000635861 CLMPQ9H6B4 373 aa18.22■□□□□ 0.51
CLN3-241ENST00000635861 GRPEL1Q9HAV7 217 aa18.22■□□□□ 0.51
CLN3-241ENST00000635861 TRIM39Q9HCM9 518 aa18.22■□□□□ 0.51
CLN3-241ENST00000635861 ZNHIT6Q9NWK9 470 aaKnown RBP18.22■□□□□ 0.51
CLN3-241ENST00000635861 OCIAD1Q9NX40 245 aa18.22■□□□□ 0.51
CLN3-241ENST00000635861 TMEM9Q9P0T7 183 aa18.22■□□□□ 0.51
CLN3-241ENST00000635861 ADGRG1Q9Y653 693 aa18.22■□□□□ 0.51
CLN3-241ENST00000635861 APOL1O14791 398 aa18.21■□□□□ 0.51
CLN3-241ENST00000635861 CBFA2T2O43439 604 aa18.21■□□□□ 0.51
CLN3-241ENST00000635861 PPFIA2O75334 1257 aa18.21■□□□□ 0.51
CLN3-241ENST00000635861 MTA2O94776 668 aa18.21■□□□□ 0.51
CLN3-241ENST00000635861 EML2O95834 649 aa18.21■□□□□ 0.51
CLN3-241ENST00000635861 ACP5P13686 325 aa18.21■□□□□ 0.51
CLN3-241ENST00000635861 ITGB6P18564 788 aa18.21■□□□□ 0.51
CLN3-241ENST00000635861 WT1P19544 449 aaPredicted RBP18.21■□□□□ 0.51
CLN3-241ENST00000635861 PPM1FP49593 454 aaPredicted RBP18.21■□□□□ 0.51
CLN3-241ENST00000635861 AP1B1Q10567 949 aa18.21■□□□□ 0.51
CLN3-241ENST00000635861 ZBTB17Q13105 803 aa18.21■□□□□ 0.51
CLN3-241ENST00000635861 MESDQ14696 234 aa18.21■□□□□ 0.51
CLN3-241ENST00000635861 SLC35G2Q8TBE7 412 aa18.21■□□□□ 0.51
CLN3-241ENST00000635861 OLFM3Q96PB7 478 aa18.21■□□□□ 0.51
CLN3-241ENST00000635861 PACSIN1Q9BY11 444 aa18.21■□□□□ 0.51
CLN3-241ENST00000635861 SLC25A51Q9H1U9 297 aa18.21■□□□□ 0.51
CLN3-241ENST00000635861 TRIT1Q9H3H1 467 aaKnown RBP18.21■□□□□ 0.51
CLN3-241ENST00000635861 GEMIN8Q9NWZ8 242 aaKnown RBP18.21■□□□□ 0.51
CLN3-241ENST00000635861 KCNK6Q9Y257 313 aa18.21■□□□□ 0.51
CLN3-241ENST00000635861 HEY1Q9Y5J3 304 aa18.21■□□□□ 0.51
CLN3-241ENST00000635861 PCYT1BQ9Y5K3 369 aaPredicted RBP18.21■□□□□ 0.51
CLN3-241ENST00000635861 MN1Q10571 1320 aaPredicted RBP18.2■□□□□ 0.5
CLN3-241ENST00000635861 TRBV23OR9-2A0A075B6M9 112 aa18.2■□□□□ 0.5
CLN3-241ENST00000635861 CHUKO15111 745 aa18.2■□□□□ 0.5
CLN3-241ENST00000635861 AKR1B10O60218 316 aa18.2■□□□□ 0.5
CLN3-241ENST00000635861 RAD1O60671 282 aa18.2■□□□□ 0.5
CLN3-241ENST00000635861 SLC25A14O95258 325 aaPredicted RBP18.2■□□□□ 0.5
CLN3-241ENST00000635861 WISP1O95388 367 aa18.2■□□□□ 0.5
CLN3-241ENST00000635861 ANKRD34CP0C6C1 535 aa18.2■□□□□ 0.5
CLN3-241ENST00000635861 MPSTP25325 297 aa18.2■□□□□ 0.5
CLN3-241ENST00000635861 MAP4P27816 1152 aaKnown RBP18.2■□□□□ 0.5
CLN3-241ENST00000635861 KCNC4Q03721 635 aa18.2■□□□□ 0.5
CLN3-241ENST00000635861 BORAQ6PGQ7 559 aa18.2■□□□□ 0.5
CLN3-241ENST00000635861 BZW1Q7L1Q6 419 aaKnown RBP18.2■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms