RNA–Protein interactions for RNA: ENST00000628023.3

CLN3-239, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,183 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-239ENST00000628023 TMEM98Q9Y2Y6 226 aa17.94■□□□□ 0.46
CLN3-239ENST00000628023 DMXL2Q8TDJ6 3036 aa17.94■□□□□ 0.46
CLN3-239ENST00000628023 ZFHX4Q86UP3 3567 aa17.93■□□□□ 0.46
CLN3-239ENST00000628023 ASPMQ8IZT6 3477 aa17.93■□□□□ 0.46
CLN3-239ENST00000628023 CACNA1GO43497 2377 aa17.93■□□□□ 0.46
CLN3-239ENST00000628023 TCRBV7S3A2A0A539 114 aa17.93■□□□□ 0.46
CLN3-239ENST00000628023 PRSS38A1L453 326 aa17.93■□□□□ 0.46
CLN3-239ENST00000628023 TNFRSF10CO14798 259 aa17.93■□□□□ 0.46
CLN3-239ENST00000628023 TTI1O43156 1089 aa17.93■□□□□ 0.46
CLN3-239ENST00000628023 PIAS2O75928 621 aa17.93■□□□□ 0.46
CLN3-239ENST00000628023 SLC25A14O95258 325 aaPredicted RBP17.93■□□□□ 0.46
CLN3-239ENST00000628023 PRAMEF1O95521 474 aa17.93■□□□□ 0.46
CLN3-239ENST00000628023 DGKAP23743 735 aa17.93■□□□□ 0.46
CLN3-239ENST00000628023 CHRNA6Q15825 494 aa17.93■□□□□ 0.46
CLN3-239ENST00000628023 WHAMMP3Q1A5X7 153 aa17.93■□□□□ 0.46
CLN3-239ENST00000628023 ATP13A5Q4VNC0 1218 aa17.93■□□□□ 0.46
CLN3-239ENST00000628023 CCDC157Q569K6 752 aa17.93■□□□□ 0.46
CLN3-239ENST00000628023 ANKRD22Q5VYY1 191 aa17.93■□□□□ 0.46
CLN3-239ENST00000628023 LRRC8BQ6P9F7 803 aa17.93■□□□□ 0.46
CLN3-239ENST00000628023 MARK2Q7KZI7 788 aaKnown RBP17.93■□□□□ 0.46
CLN3-239ENST00000628023 STYXQ8WUJ0 223 aa17.93■□□□□ 0.46
CLN3-239ENST00000628023 GLYATL1Q969I3 302 aa17.93■□□□□ 0.46
CLN3-239ENST00000628023 COX14Q96I36 57 aa17.93■□□□□ 0.46
CLN3-239ENST00000628023 FRMD8Q9BZ67 464 aaPredicted RBP17.93■□□□□ 0.46
CLN3-239ENST00000628023 TCEAL2Q9H3H9 227 aaPredicted RBP17.93■□□□□ 0.46
CLN3-239ENST00000628023 ARFGAP3Q9NP61 516 aa17.93■□□□□ 0.46
CLN3-239ENST00000628023 MRPL40Q9NQ50 206 aaKnown RBP17.93■□□□□ 0.46
CLN3-239ENST00000628023 TOR4AQ9NXH8 423 aa17.93■□□□□ 0.46
CLN3-239ENST00000628023 BFARQ9NZS9 450 aa17.93■□□□□ 0.46
CLN3-239ENST00000628023 KLF15Q9UIH9 416 aa17.93■□□□□ 0.46
CLN3-239ENST00000628023 PNMA8BQ9ULN7 279 aaPredicted RBP17.93■□□□□ 0.46
CLN3-239ENST00000628023 DOLKQ9UPQ8 538 aa17.93■□□□□ 0.46
CLN3-239ENST00000628023 NEMP2A6NFY4 417 aa17.92■□□□□ 0.46
CLN3-239ENST00000628023 GOLGA8MH3BSY2 632 aa17.92■□□□□ 0.46
CLN3-239ENST00000628023 FFAR2O15552 330 aa17.92■□□□□ 0.46
CLN3-239ENST00000628023 AQP9O43315 295 aa17.92■□□□□ 0.46
CLN3-239ENST00000628023 TMEM63AO94886 807 aa17.92■□□□□ 0.46
CLN3-239ENST00000628023 DKK1O94907 266 aa17.92■□□□□ 0.46
CLN3-239ENST00000628023 ALPPL2P10696 532 aa17.92■□□□□ 0.46
CLN3-239ENST00000628023 ITGALP20701 1170 aa17.92■□□□□ 0.46
CLN3-239ENST00000628023 ADRA1DP25100 572 aa17.92■□□□□ 0.46
CLN3-239ENST00000628023 MAGEA6P43360 314 aa17.92■□□□□ 0.46
CLN3-239ENST00000628023 GNPDA1P46926 289 aa17.92■□□□□ 0.46
CLN3-239ENST00000628023 POLD2P49005 469 aa17.92■□□□□ 0.46
CLN3-239ENST00000628023 SKIDA1Q1XH10 827 aa17.92■□□□□ 0.46
CLN3-239ENST00000628023 PCGF5Q86SE9 256 aa17.92■□□□□ 0.46
CLN3-239ENST00000628023 PPIL6Q8IXY8 311 aa17.92■□□□□ 0.46
CLN3-239ENST00000628023 RANBP9Q96S59 729 aa17.92■□□□□ 0.46
CLN3-239ENST00000628023 TRIM51Q9BSJ1 452 aa17.92■□□□□ 0.46
CLN3-239ENST00000628023 LRRC61Q9BV99 259 aa17.92■□□□□ 0.46
CLN3-239ENST00000628023 IL22Q9GZX6 179 aa17.92■□□□□ 0.46
CLN3-239ENST00000628023 CAAP1Q9H8G2 361 aa17.92■□□□□ 0.46
CLN3-239ENST00000628023 UCKL1Q9NWZ5 548 aa17.92■□□□□ 0.46
CLN3-239ENST00000628023 SUFUQ9UMX1 484 aa17.92■□□□□ 0.46
CLN3-239ENST00000628023 SLC17A4Q9Y2C5 497 aa17.92■□□□□ 0.46
CLN3-239ENST00000628023 TCAF1Q9Y4C2 921 aa17.92■□□□□ 0.46
CLN3-239ENST00000628023 SLC30A1Q9Y6M5 507 aa17.92■□□□□ 0.46
CLN3-239ENST00000628023 DGKBQ9Y6T7 804 aa17.92■□□□□ 0.46
CLN3-239ENST00000628023 GOLGA4Q13439 2230 aaKnown RBP17.92■□□□□ 0.46
CLN3-239ENST00000628023 TDRD6O60522 2096 aaKnown RBP17.92■□□□□ 0.46
CLN3-239ENST00000628023 MYLKQ15746 1914 aa17.92■□□□□ 0.46
CLN3-239ENST00000628023 TAF4O00268 1085 aa17.91■□□□□ 0.46
CLN3-239ENST00000628023 CCL22O00626 93 aa17.91■□□□□ 0.46
CLN3-239ENST00000628023 DNALI1O14645 258 aaPredicted RBP17.91■□□□□ 0.46
CLN3-239ENST00000628023 SRP72O76094 671 aaKnown RBP17.91■□□□□ 0.46
CLN3-239ENST00000628023 CAPNS1P04632 268 aa17.91■□□□□ 0.46
CLN3-239ENST00000628023 CEACAM5P06731 702 aa17.91■□□□□ 0.46
CLN3-239ENST00000628023 CDK4P11802 303 aa17.91■□□□□ 0.46
CLN3-239ENST00000628023 MGAT1P26572 445 aa17.91■□□□□ 0.46
CLN3-239ENST00000628023 MC4RP32245 332 aa17.91■□□□□ 0.46
CLN3-239ENST00000628023 NPY2RP49146 381 aa17.91■□□□□ 0.46
CLN3-239ENST00000628023 CRADDP78560 199 aa17.91■□□□□ 0.46
CLN3-239ENST00000628023 C1orf61Q13536 156 aa17.91■□□□□ 0.46
CLN3-239ENST00000628023 ELOCQ15369 112 aa17.91■□□□□ 0.46
CLN3-239ENST00000628023 IZUMO3Q5VZ72 239 aa17.91■□□□□ 0.46
CLN3-239ENST00000628023 KCTD16Q68DU8 428 aa17.91■□□□□ 0.46
CLN3-239ENST00000628023 CASC4Q6P4E1 433 aa17.91■□□□□ 0.46
CLN3-239ENST00000628023 NLRP9Q7RTR0 991 aa17.91■□□□□ 0.46
CLN3-239ENST00000628023 FSTL5Q8N475 847 aaPredicted RBP17.91■□□□□ 0.46
CLN3-239ENST00000628023 EID2Q8N6I1 236 aa17.91■□□□□ 0.46
CLN3-239ENST00000628023 ZNF398Q8TD17 642 aa17.91■□□□□ 0.46
CLN3-239ENST00000628023 VPS35Q96QK1 796 aa17.91■□□□□ 0.46
CLN3-239ENST00000628023 TRIM31Q9BZY9 425 aa17.91■□□□□ 0.46
CLN3-239ENST00000628023 ASB8Q9H765 288 aa17.91■□□□□ 0.46
CLN3-239ENST00000628023 XAB2Q9HCS7 855 aaKnown RBP17.91■□□□□ 0.46
CLN3-239ENST00000628023 NLE1Q9NVX2 485 aaPredicted RBP17.91■□□□□ 0.46
CLN3-239ENST00000628023 VPS18Q9P253 973 aa17.91■□□□□ 0.46
CLN3-239ENST00000628023 CRLS1Q9UJA2 301 aa17.91■□□□□ 0.46
CLN3-239ENST00000628023 CNOT6Q9ULM6 557 aaKnown RBP17.91■□□□□ 0.46
CLN3-239ENST00000628023 OAS3Q9Y6K5 1087 aaKnown RBP17.91■□□□□ 0.46
CLN3-239ENST00000628023 PTPRBP23467 1997 aa17.91■□□□□ 0.46
CLN3-239ENST00000628023 DSPP15924 2871 aaKnown RBP17.91■□□□□ 0.46
CLN3-239ENST00000628023 ZFYVE26Q68DK2 2539 aa17.91■□□□□ 0.46
CLN3-239ENST00000628023 MROH6A6NGR9 719 aa17.9■□□□□ 0.46
CLN3-239ENST00000628023 GPR39O43194 453 aa17.9■□□□□ 0.46
CLN3-239ENST00000628023 UGT1A9O60656 530 aa17.9■□□□□ 0.46
CLN3-239ENST00000628023 LDOC1O95751 146 aaPredicted RBP17.9■□□□□ 0.46
CLN3-239ENST00000628023 IVLP07476 585 aa17.9■□□□□ 0.46
CLN3-239ENST00000628023 UGT1A6P19224 532 aa17.9■□□□□ 0.46
CLN3-239ENST00000628023 UGT1A1P22309 533 aa17.9■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms