RNA–Protein interactions for RNA: ENST00000618700.4

UPF3A-211, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 1,210 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-211ENST00000618700 C21orf59P57076 290 aa19.55■□□□□ 0.72
UPF3A-211ENST00000618700 PRAMEP78395 509 aa19.55■□□□□ 0.72
UPF3A-211ENST00000618700 PDE1CQ14123 709 aaPredicted RBP19.55■□□□□ 0.72
UPF3A-211ENST00000618700 HLTFQ14527 1009 aaKnown RBP eCLIP19.55■□□□□ 0.72
UPF3A-211ENST00000618700 CRYMQ14894 314 aa19.55■□□□□ 0.72
UPF3A-211ENST00000618700 CCDC6Q16204 474 aa19.55■□□□□ 0.72
UPF3A-211ENST00000618700 STEAP4Q687X5 459 aa19.55■□□□□ 0.72
UPF3A-211ENST00000618700 PHYKPLQ8IUZ5 450 aa19.55■□□□□ 0.72
UPF3A-211ENST00000618700 FBXO36Q8NEA4 188 aa19.55■□□□□ 0.72
UPF3A-211ENST00000618700 RUBCNQ92622 972 aa19.55■□□□□ 0.72
UPF3A-211ENST00000618700 SKA1Q96BD8 255 aa19.55■□□□□ 0.72
UPF3A-211ENST00000618700 FMO2Q99518 471 aa19.55■□□□□ 0.72
UPF3A-211ENST00000618700 SMOC1Q9H4F8 434 aa19.55■□□□□ 0.72
UPF3A-211ENST00000618700 ASB8Q9H765 288 aa19.55■□□□□ 0.72
UPF3A-211ENST00000618700 UGT1A7Q9HAW7 530 aa19.55■□□□□ 0.72
UPF3A-211ENST00000618700 UGT1A10Q9HAW8 530 aa19.55■□□□□ 0.72
UPF3A-211ENST00000618700 UGT1A8Q9HAW9 530 aa19.55■□□□□ 0.72
UPF3A-211ENST00000618700 SAYSD1Q9NPB0 183 aa19.55■□□□□ 0.72
UPF3A-211ENST00000618700 MTRF1LQ9UGC7 380 aaKnown RBP19.55■□□□□ 0.72
UPF3A-211ENST00000618700 SLC6A14Q9UN76 642 aa19.55■□□□□ 0.72
UPF3A-211ENST00000618700 SLC30A1Q9Y6M5 507 aa19.55■□□□□ 0.72
UPF3A-211ENST00000618700 TP53BP1Q12888 1972 aaPredicted RBP19.54■□□□□ 0.72
UPF3A-211ENST00000618700 LRP3O75074 770 aa19.54■□□□□ 0.72
UPF3A-211ENST00000618700 POLBP06746 335 aa19.54■□□□□ 0.72
UPF3A-211ENST00000618700 PAMP19021 973 aa19.54■□□□□ 0.72
UPF3A-211ENST00000618700 TNFRSF8P28908 595 aa19.54■□□□□ 0.72
UPF3A-211ENST00000618700 THOP1P52888 689 aa19.54■□□□□ 0.72
UPF3A-211ENST00000618700 CACNG1Q06432 222 aa19.54■□□□□ 0.72
UPF3A-211ENST00000618700 GRIK2Q13002 908 aa19.54■□□□□ 0.72
UPF3A-211ENST00000618700 FZD2Q14332 565 aa19.54■□□□□ 0.72
UPF3A-211ENST00000618700 KIF19Q2TAC6 998 aa19.54■□□□□ 0.72
UPF3A-211ENST00000618700 GPR33Q49SQ1 333 aa19.54■□□□□ 0.72
UPF3A-211ENST00000618700 HP1BP3Q5SSJ5 553 aaPredicted RBP19.54■□□□□ 0.72
UPF3A-211ENST00000618700 TRIM74Q86UV6 250 aa19.54■□□□□ 0.72
UPF3A-211ENST00000618700 ANKMY2Q8IV38 441 aa19.54■□□□□ 0.72
UPF3A-211ENST00000618700 PIANPQ8IYJ0 282 aa19.54■□□□□ 0.72
UPF3A-211ENST00000618700 ZBED8Q8IZ13 594 aa19.54■□□□□ 0.72
UPF3A-211ENST00000618700 EIF1ADQ8N9N8 165 aaKnown RBP19.54■□□□□ 0.72
UPF3A-211ENST00000618700 DDHD1Q8NEL9 900 aa19.54■□□□□ 0.72
UPF3A-211ENST00000618700 OR4L1Q8NH43 312 aa19.54■□□□□ 0.72
UPF3A-211ENST00000618700 NCDNQ9UBB6 729 aa19.54■□□□□ 0.72
UPF3A-211ENST00000618700 ZC3H7BQ9UGR2 993 aaKnown RBP19.54■□□□□ 0.72
UPF3A-211ENST00000618700 OAS3Q9Y6K5 1087 aaKnown RBP19.54■□□□□ 0.72
UPF3A-211ENST00000618700 FAM169AQ9Y6X4 670 aa19.54■□□□□ 0.72
UPF3A-211ENST00000618700 TMEM202A6NGA9 273 aa19.53■□□□□ 0.72
UPF3A-211ENST00000618700 VAPBO95292 243 aa19.53■□□□□ 0.72
UPF3A-211ENST00000618700 ZNF806P0C7X5 589 aa19.53■□□□□ 0.72
UPF3A-211ENST00000618700 PRSS56P0CW18 603 aa19.53■□□□□ 0.72
UPF3A-211ENST00000618700 KELP23276 732 aa19.53■□□□□ 0.72
UPF3A-211ENST00000618700 PTK2BQ14289 1009 aa19.53■□□□□ 0.72
UPF3A-211ENST00000618700 KHDC1Q4VXA5 237 aaKnown RBP19.53■□□□□ 0.72
UPF3A-211ENST00000618700 ZRANB3Q5FWF4 1079 aa19.53■□□□□ 0.72
UPF3A-211ENST00000618700 SPANXN3Q5MJ09 141 aa19.53■□□□□ 0.72
UPF3A-211ENST00000618700 GPRC6AQ5T6X5 926 aa19.53■□□□□ 0.72
UPF3A-211ENST00000618700 TCEAL6Q6IPX3 200 aa19.53■□□□□ 0.72
UPF3A-211ENST00000618700 PSAPL1Q6NUJ1 521 aa19.53■□□□□ 0.72
UPF3A-211ENST00000618700 UNC5AQ6ZN44 842 aa19.53■□□□□ 0.72
UPF3A-211ENST00000618700 NXPE1Q8N323 547 aa19.53■□□□□ 0.72
UPF3A-211ENST00000618700 SERBP1Q8NC51 408 aaKnown RBP eCLIP19.53■□□□□ 0.72
UPF3A-211ENST00000618700 OR6P1Q8NGX9 317 aa19.53■□□□□ 0.72
UPF3A-211ENST00000618700 TCEAL3Q969E4 200 aa19.53■□□□□ 0.72
UPF3A-211ENST00000618700 ULK4Q96C45 1275 aa19.53■□□□□ 0.72
UPF3A-211ENST00000618700 WDR92Q96MX6 357 aa19.53■□□□□ 0.72
UPF3A-211ENST00000618700 FSCN3Q9NQT6 498 aa19.53■□□□□ 0.72
UPF3A-211ENST00000618700 PNMA8BQ9ULN7 279 aaPredicted RBP19.53■□□□□ 0.72
UPF3A-211ENST00000618700 NFU1Q9UMS0 254 aa19.53■□□□□ 0.72
UPF3A-211ENST00000618700 SLC17A4Q9Y2C5 497 aa19.53■□□□□ 0.72
UPF3A-211ENST00000618700 SNX11Q9Y5W9 270 aa19.53■□□□□ 0.72
UPF3A-211ENST00000618700 KNL1Q8NG31 2342 aa19.52■□□□□ 0.72
UPF3A-211ENST00000618700 PIEZO1Q92508 2521 aa19.52■□□□□ 0.72
UPF3A-211ENST00000618700 KHNYNO15037 678 aaKnown RBP19.52■□□□□ 0.72
UPF3A-211ENST00000618700 SLC25A14O95258 325 aaPredicted RBP19.52■□□□□ 0.72
UPF3A-211ENST00000618700 HTR1BP28222 390 aa19.52■□□□□ 0.72
UPF3A-211ENST00000618700 CDKN1CP49918 316 aaPredicted RBP19.52■□□□□ 0.72
UPF3A-211ENST00000618700 EIF2B5Q13144 721 aaKnown RBP19.52■□□□□ 0.72
UPF3A-211ENST00000618700 FRG1Q14331 258 aaKnown RBP19.52■□□□□ 0.72
UPF3A-211ENST00000618700 LONRF1Q17RB8 773 aa19.52■□□□□ 0.72
UPF3A-211ENST00000618700 LDLRAP1Q5SW96 308 aa19.52■□□□□ 0.72
UPF3A-211ENST00000618700 KCTD16Q68DU8 428 aa19.52■□□□□ 0.72
UPF3A-211ENST00000618700 PARGQ86W56 976 aa19.52■□□□□ 0.72
UPF3A-211ENST00000618700 CCDC25Q86WR0 208 aa19.52■□□□□ 0.72
UPF3A-211ENST00000618700 RELL1Q8IUW5 271 aa19.52■□□□□ 0.72
UPF3A-211ENST00000618700 OR56A4Q8NGH8 313 aa19.52■□□□□ 0.72
UPF3A-211ENST00000618700 UBXN4Q92575 508 aa19.52■□□□□ 0.72
UPF3A-211ENST00000618700 CFAP36Q96G28 342 aa19.52■□□□□ 0.72
UPF3A-211ENST00000618700 NUSAP1Q9BXS6 441 aaKnown RBP19.52■□□□□ 0.72
UPF3A-211ENST00000618700 ZDHHC5Q9C0B5 715 aa19.52■□□□□ 0.72
UPF3A-211ENST00000618700 TSPYL1Q9H0U9 437 aa19.52■□□□□ 0.72
UPF3A-211ENST00000618700 FAM96AQ9H5X1 160 aa19.52■□□□□ 0.72
UPF3A-211ENST00000618700 ERVMER34-1Q9H9K5 563 aa19.52■□□□□ 0.72
UPF3A-211ENST00000618700 FGF22Q9HCT0 170 aa19.52■□□□□ 0.72
UPF3A-211ENST00000618700 PARD6AQ9NPB6 346 aa19.52■□□□□ 0.72
UPF3A-211ENST00000618700 VPS18Q9P253 973 aa19.52■□□□□ 0.72
UPF3A-211ENST00000618700 MARCH4Q9P2E8 410 aaPredicted RBP19.52■□□□□ 0.72
UPF3A-211ENST00000618700 CRLS1Q9UJA2 301 aa19.52■□□□□ 0.72
UPF3A-211ENST00000618700 LHX6Q9UPM6 363 aa19.52■□□□□ 0.72
UPF3A-211ENST00000618700 LRP4O75096 1905 aa19.52■□□□□ 0.72
UPF3A-211ENST00000618700 ZFHX2Q9C0A1 2572 aaPredicted RBP19.51■□□□□ 0.71
UPF3A-211ENST00000618700 IGLV3-16A0A075B6K0 115 aa19.51■□□□□ 0.71
UPF3A-211ENST00000618700 ARHGAP33O14559 1287 aa19.51■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms