RNA–Protein interactions for RNA: ENST00000611852.4

CCDC28A-202, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,505 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-202ENST00000611852 BAHD1Q8TBE0 780 aaPredicted RBP16.4■□□□□ 0.22
CCDC28A-202ENST00000611852 ZNF398Q8TD17 642 aa16.4■□□□□ 0.22
CCDC28A-202ENST00000611852 TRIM39Q9HCM9 518 aa16.4■□□□□ 0.22
CCDC28A-202ENST00000611852 BFARQ9NZS9 450 aa16.4■□□□□ 0.22
CCDC28A-202ENST00000611852 TCAF1Q9Y4C2 921 aa16.4■□□□□ 0.22
CCDC28A-202ENST00000611852 CCDC78A2IDD5 438 aa16.39■□□□□ 0.21
CCDC28A-202ENST00000611852 AGAP14A8MT82 685 aa16.39■□□□□ 0.21
CCDC28A-202ENST00000611852 DNALI1O14645 258 aaPredicted RBP16.39■□□□□ 0.21
CCDC28A-202ENST00000611852 FFAR2O15552 330 aa16.39■□□□□ 0.21
CCDC28A-202ENST00000611852 DNAJC6O75061 913 aa16.39■□□□□ 0.21
CCDC28A-202ENST00000611852 AVILO75366 819 aa16.39■□□□□ 0.21
CCDC28A-202ENST00000611852 CELA2BP08218 269 aaPredicted RBP16.39■□□□□ 0.21
CCDC28A-202ENST00000611852 GNPDA1P46926 289 aa16.39■□□□□ 0.21
CCDC28A-202ENST00000611852 CRADDP78560 199 aa16.39■□□□□ 0.21
CCDC28A-202ENST00000611852 NFATC2Q13469 925 aa16.39■□□□□ 0.21
CCDC28A-202ENST00000611852 SKIDA1Q1XH10 827 aa16.39■□□□□ 0.21
CCDC28A-202ENST00000611852 KHDC1Q4VXA5 237 aaKnown RBP16.39■□□□□ 0.21
CCDC28A-202ENST00000611852 PCID2Q5JVF3 399 aa16.39■□□□□ 0.21
CCDC28A-202ENST00000611852 ZNF648Q5T619 568 aaPredicted RBP16.39■□□□□ 0.21
CCDC28A-202ENST00000611852 TSTD2Q5T7W7 516 aa16.39■□□□□ 0.21
CCDC28A-202ENST00000611852 MARK2Q7KZI7 788 aaKnown RBP16.39■□□□□ 0.21
CCDC28A-202ENST00000611852 FSTL5Q8N475 847 aaPredicted RBP16.39■□□□□ 0.21
CCDC28A-202ENST00000611852 OR13J1Q8NGT2 312 aa16.39■□□□□ 0.21
CCDC28A-202ENST00000611852 OR4C6Q8NH72 309 aa16.39■□□□□ 0.21
CCDC28A-202ENST00000611852 CDKN2AIPNLQ96HQ2 116 aa16.39■□□□□ 0.21
CCDC28A-202ENST00000611852 ZNF778Q96MU6 729 aa16.39■□□□□ 0.21
CCDC28A-202ENST00000611852 TRIM51Q9BSJ1 452 aa16.39■□□□□ 0.21
CCDC28A-202ENST00000611852 IL22Q9GZX6 179 aa16.39■□□□□ 0.21
CCDC28A-202ENST00000611852 TMEM168Q9H0V1 697 aa16.39■□□□□ 0.21
CCDC28A-202ENST00000611852 OR2AG1Q9H205 316 aa16.39■□□□□ 0.21
CCDC28A-202ENST00000611852 SLC32A1Q9H598 525 aa16.39■□□□□ 0.21
CCDC28A-202ENST00000611852 ASB8Q9H765 288 aa16.39■□□□□ 0.21
CCDC28A-202ENST00000611852 SUDS3Q9H7L9 328 aaPredicted RBP16.39■□□□□ 0.21
CCDC28A-202ENST00000611852 CHRAC1Q9NRG0 131 aa16.39■□□□□ 0.21
CCDC28A-202ENST00000611852 SMOXQ9NWM0 555 aa16.39■□□□□ 0.21
CCDC28A-202ENST00000611852 ATXN10Q9UBB4 475 aa16.39■□□□□ 0.21
CCDC28A-202ENST00000611852 RIMKLBQ9ULI2 386 aa16.39■□□□□ 0.21
CCDC28A-202ENST00000611852 LMO7DNF2Z398 122 aa16.38■□□□□ 0.21
CCDC28A-202ENST00000611852 GOLGA8MH3BSY2 632 aa16.38■□□□□ 0.21
CCDC28A-202ENST00000611852 TRIM38O00635 465 aa16.38■□□□□ 0.21
CCDC28A-202ENST00000611852 MTX2O75431 263 aa16.38■□□□□ 0.21
CCDC28A-202ENST00000611852 MLNP12872 115 aa16.38■□□□□ 0.21
CCDC28A-202ENST00000611852 CEACAM1P13688 526 aa16.38■□□□□ 0.21
CCDC28A-202ENST00000611852 MGAT1P26572 445 aa16.38■□□□□ 0.21
CCDC28A-202ENST00000611852 ARSDP51689 593 aa16.38■□□□□ 0.21
CCDC28A-202ENST00000611852 CKAP4Q07065 602 aaKnown RBP16.38■□□□□ 0.21
CCDC28A-202ENST00000611852 ELOCQ15369 112 aa16.38■□□□□ 0.21
CCDC28A-202ENST00000611852 TCEA2Q15560 299 aa16.38■□□□□ 0.21
CCDC28A-202ENST00000611852 PYCR3Q53H96 274 aa16.38■□□□□ 0.21
CCDC28A-202ENST00000611852 NLRP9Q7RTR0 991 aa16.38■□□□□ 0.21
CCDC28A-202ENST00000611852 ADGRG6Q86SQ4 1221 aa16.38■□□□□ 0.21
CCDC28A-202ENST00000611852 PPHLN1Q8NEY8 458 aaKnown RBP16.38■□□□□ 0.21
CCDC28A-202ENST00000611852 KIF18AQ8NI77 898 aa16.38■□□□□ 0.21
CCDC28A-202ENST00000611852 GDAP1Q8TB36 358 aa16.38■□□□□ 0.21
CCDC28A-202ENST00000611852 PEX13Q92968 403 aa16.38■□□□□ 0.21
CCDC28A-202ENST00000611852 SERPINB12Q96P63 405 aa16.38■□□□□ 0.21
CCDC28A-202ENST00000611852 XAB2Q9HCS7 855 aaKnown RBP16.38■□□□□ 0.21
CCDC28A-202ENST00000611852 TRNAU1APQ9NX07 287 aaKnown RBP16.38■□□□□ 0.21
CCDC28A-202ENST00000611852 NLGN3Q9NZ94 848 aa16.38■□□□□ 0.21
CCDC28A-202ENST00000611852 SLC2A6Q9UGQ3 507 aa16.38■□□□□ 0.21
CCDC28A-202ENST00000611852 PCYT1BQ9Y5K3 369 aaPredicted RBP16.38■□□□□ 0.21
CCDC28A-202ENST00000611852 PLXNB3Q9ULL4 1909 aa16.37■□□□□ 0.21
CCDC28A-202ENST00000611852 COL5A1P20908 1838 aaPredicted RBP16.37■□□□□ 0.21
CCDC28A-202ENST00000611852 GPR89AB7ZAQ6 455 aa16.37■□□□□ 0.21
CCDC28A-202ENST00000611852 TPP1O14773 563 aa16.37■□□□□ 0.21
CCDC28A-202ENST00000611852 YY2O15391 372 aa16.37■□□□□ 0.21
CCDC28A-202ENST00000611852 NUAK1O60285 661 aa16.37■□□□□ 0.21
CCDC28A-202ENST00000611852 KCNK5O95279 499 aa16.37■□□□□ 0.21
CCDC28A-202ENST00000611852 GPR89BP0CG08 455 aa16.37■□□□□ 0.21
CCDC28A-202ENST00000611852 ZNF8P17098 575 aaPredicted RBP16.37■□□□□ 0.21
CCDC28A-202ENST00000611852 MC4RP32245 332 aa16.37■□□□□ 0.21
CCDC28A-202ENST00000611852 NOVA1P51513 510 aaKnown RBP16.37■□□□□ 0.21
CCDC28A-202ENST00000611852 ACVR1Q04771 509 aa16.37■□□□□ 0.21
CCDC28A-202ENST00000611852 WHAMMP3Q1A5X7 153 aa16.37■□□□□ 0.21
CCDC28A-202ENST00000611852 DEFB133Q30KQ1 61 aa16.37■□□□□ 0.21
CCDC28A-202ENST00000611852 GPRC6AQ5T6X5 926 aa16.37■□□□□ 0.21
CCDC28A-202ENST00000611852 IZUMO3Q5VZ72 239 aa16.37■□□□□ 0.21
CCDC28A-202ENST00000611852 MICALCLQ6ZW33 695 aa16.37■□□□□ 0.21
CCDC28A-202ENST00000611852 SNX20Q7Z614 316 aa16.37■□□□□ 0.21
CCDC28A-202ENST00000611852 PCGF5Q86SE9 256 aa16.37■□□□□ 0.21
CCDC28A-202ENST00000611852 SDR16C5Q8N3Y7 309 aa16.37■□□□□ 0.21
CCDC28A-202ENST00000611852 DDHD1Q8NEL9 900 aa16.37■□□□□ 0.21
CCDC28A-202ENST00000611852 CCL4L1Q8NHW4 92 aa16.37■□□□□ 0.21
CCDC28A-202ENST00000611852 RMI1Q9H9A7 625 aa16.37■□□□□ 0.21
CCDC28A-202ENST00000611852 SYBUQ9NX95 663 aa16.37■□□□□ 0.21
CCDC28A-202ENST00000611852 MRFAP1Q9Y605 127 aa16.37■□□□□ 0.21
CCDC28A-202ENST00000611852 SLC30A1Q9Y6M5 507 aa16.37■□□□□ 0.21
CCDC28A-202ENST00000611852 BPTFQ12830 3046 aa16.37■□□□□ 0.21
CCDC28A-202ENST00000611852 GIPC1O14908 333 aa16.36■□□□□ 0.21
CCDC28A-202ENST00000611852 CHUKO15111 745 aa16.36■□□□□ 0.21
CCDC28A-202ENST00000611852 SIGLEC6O43699 453 aa16.36■□□□□ 0.21
CCDC28A-202ENST00000611852 VEGFDO43915 354 aa16.36■□□□□ 0.21
CCDC28A-202ENST00000611852 CDK14O94921 469 aa16.36■□□□□ 0.21
CCDC28A-202ENST00000611852 ANXA6P08133 673 aa16.36■□□□□ 0.21
CCDC28A-202ENST00000611852 ALPPL2P10696 532 aa16.36■□□□□ 0.21
CCDC28A-202ENST00000611852 ITGALP20701 1170 aa16.36■□□□□ 0.21
CCDC28A-202ENST00000611852 MAGEA3P43357 314 aa16.36■□□□□ 0.21
CCDC28A-202ENST00000611852 MRPS25P82663 173 aaKnown RBP16.36■□□□□ 0.21
CCDC28A-202ENST00000611852 TMEM115Q12893 351 aaPredicted RBP16.36■□□□□ 0.21
CCDC28A-202ENST00000611852 TRIP6Q15654 476 aaKnown RBP16.36■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms