RNA–Protein interactions for RNA: ENST00000607092.1

CUX1-220, Transcript of cut like homeobox 1, humanhuman

TSL 3

Gene CUX1, Length 559 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-220ENST00000607092 KCTD16Q68DU8 428 aa6.23□□□□□ -1.41
CUX1-220ENST00000607092 PDPK2PQ6A1A2 396 aa6.23□□□□□ -1.41
CUX1-220ENST00000607092 PLEKHA7Q6IQ23 1121 aa6.23□□□□□ -1.41
CUX1-220ENST00000607092 IYDQ6PHW0 289 aa6.23□□□□□ -1.41
CUX1-220ENST00000607092 CHST15Q7LFX5 561 aaPredicted RBP6.23□□□□□ -1.41
CUX1-220ENST00000607092 HSD11B1LQ7Z5J1 315 aa6.23□□□□□ -1.41
CUX1-220ENST00000607092 PPP1R3BQ86XI6 285 aa6.23□□□□□ -1.41
CUX1-220ENST00000607092 RASGRP3Q8IV61 690 aa6.23□□□□□ -1.41
CUX1-220ENST00000607092 ARHGAP12Q8IWW6 846 aa6.23□□□□□ -1.41
CUX1-220ENST00000607092 AOPEPQ8N6M6 819 aa6.23□□□□□ -1.41
CUX1-220ENST00000607092 SSC4DQ8WTU2 575 aa6.23□□□□□ -1.41
CUX1-220ENST00000607092 PATE1Q8WXA2 126 aa6.23□□□□□ -1.41
CUX1-220ENST00000607092 FATE1Q969F0 183 aa6.23□□□□□ -1.41
CUX1-220ENST00000607092 COX14Q96I36 57 aa6.23□□□□□ -1.41
CUX1-220ENST00000607092 LYSMD1Q96S90 227 aa6.23□□□□□ -1.41
CUX1-220ENST00000607092 SNRNP25Q9BV90 132 aaKnown RBP6.23□□□□□ -1.41
CUX1-220ENST00000607092 TWSG1Q9GZX9 223 aa6.23□□□□□ -1.41
CUX1-220ENST00000607092 RAB6CQ9H0N0 254 aa6.23□□□□□ -1.41
CUX1-220ENST00000607092 NUP62CLQ9H1M0 184 aa6.23□□□□□ -1.41
CUX1-220ENST00000607092 ABCG8Q9H221 673 aa6.23□□□□□ -1.41
CUX1-220ENST00000607092 CARD9Q9H257 536 aa6.23□□□□□ -1.41
CUX1-220ENST00000607092 FAM83DQ9H4H8 585 aa6.23□□□□□ -1.41
CUX1-220ENST00000607092 NOD2Q9HC29 1040 aa6.23□□□□□ -1.41
CUX1-220ENST00000607092 SAMSN1Q9NSI8 373 aaKnown RBP6.23□□□□□ -1.41
CUX1-220ENST00000607092 POT1Q9NUX5 634 aa6.23□□□□□ -1.41
CUX1-220ENST00000607092 TAB2Q9NYJ8 693 aa6.23□□□□□ -1.41
CUX1-220ENST00000607092 PKD2L2Q9NZM6 624 aa6.23□□□□□ -1.41
CUX1-220ENST00000607092 TMEM63CQ9P1W3 806 aa6.23□□□□□ -1.41
CUX1-220ENST00000607092 CPNE7Q9UBL6 633 aa6.23□□□□□ -1.41
CUX1-220ENST00000607092 PLEKHB1Q9UF11 243 aaPredicted RBP6.23□□□□□ -1.41
CUX1-220ENST00000607092 ZNHIT2Q9UHR6 403 aa6.23□□□□□ -1.41
CUX1-220ENST00000607092 PADI1Q9ULC6 663 aa6.23□□□□□ -1.41
CUX1-220ENST00000607092 TP53TG5Q9Y2B4 290 aa6.23□□□□□ -1.41
CUX1-220ENST00000607092 PCDHGA9Q9Y5G4 932 aaKnown RBP6.23□□□□□ -1.41
CUX1-220ENST00000607092 C2CD3Q4AC94 2353 aa6.23□□□□□ -1.41
CUX1-220ENST00000607092 HIVEP3Q5T1R4 2406 aa6.23□□□□□ -1.41
CUX1-220ENST00000607092 CELSR2Q9HCU4 2923 aa6.22□□□□□ -1.41
CUX1-220ENST00000607092 PIPSLA2A3N6 862 aa6.22□□□□□ -1.41
CUX1-220ENST00000607092 TMEM191CA6NGB0 347 aa6.22□□□□□ -1.41
CUX1-220ENST00000607092 NPIPB15A6NHN6 443 aaPredicted RBP6.22□□□□□ -1.41
CUX1-220ENST00000607092 LGALS16A8MUM7 142 aa6.22□□□□□ -1.41
CUX1-220ENST00000607092 MTSS1O43312 755 aa6.22□□□□□ -1.41
CUX1-220ENST00000607092 FZD6O60353 706 aa6.22□□□□□ -1.41
CUX1-220ENST00000607092 MAFKO60675 156 aa6.22□□□□□ -1.41
CUX1-220ENST00000607092 KATNA1O75449 491 aa6.22□□□□□ -1.41
CUX1-220ENST00000607092 CREG1O75629 220 aa6.22□□□□□ -1.41
CUX1-220ENST00000607092 RASSF9O75901 435 aa6.22□□□□□ -1.41
CUX1-220ENST00000607092 NDUFA10O95299 355 aa6.22□□□□□ -1.41
CUX1-220ENST00000607092 C9P02748 559 aa6.22□□□□□ -1.41
CUX1-220ENST00000607092 FUCA1P04066 466 aa6.22□□□□□ -1.41
CUX1-220ENST00000607092 FGF5P12034 268 aa6.22□□□□□ -1.41
CUX1-220ENST00000607092 AMD1P17707 334 aa6.22□□□□□ -1.41
CUX1-220ENST00000607092 XRCC1P18887 633 aaPredicted RBP6.22□□□□□ -1.41
CUX1-220ENST00000607092 MX2P20592 715 aa6.22□□□□□ -1.41
CUX1-220ENST00000607092 CDK11BP21127 795 aaKnown RBP6.22□□□□□ -1.41
CUX1-220ENST00000607092 LHCGRP22888 699 aa6.22□□□□□ -1.41
CUX1-220ENST00000607092 MIPP30301 263 aa6.22□□□□□ -1.41
CUX1-220ENST00000607092 HALP42357 657 aa6.22□□□□□ -1.41
CUX1-220ENST00000607092 MAPK9P45984 424 aa6.22□□□□□ -1.41
CUX1-220ENST00000607092 ARL4DP49703 201 aa6.22□□□□□ -1.41
CUX1-220ENST00000607092 ZNF165P49910 485 aa6.22□□□□□ -1.41
CUX1-220ENST00000607092 PGDP52209 483 aa6.22□□□□□ -1.41
CUX1-220ENST00000607092 STC1P52823 247 aa6.22□□□□□ -1.41
CUX1-220ENST00000607092 ACY1Q03154 408 aa6.22□□□□□ -1.41
CUX1-220ENST00000607092 ITKQ08881 620 aa6.22□□□□□ -1.41
CUX1-220ENST00000607092 TRAF2Q12933 501 aa6.22□□□□□ -1.41
CUX1-220ENST00000607092 DNASE1L3Q13609 305 aa6.22□□□□□ -1.41
CUX1-220ENST00000607092 DPYSQ14117 519 aa6.22□□□□□ -1.41
CUX1-220ENST00000607092 PIGHQ14442 188 aaPredicted RBP6.22□□□□□ -1.41
CUX1-220ENST00000607092 DPYSL2Q16555 572 aa6.22□□□□□ -1.41
CUX1-220ENST00000607092 HSP90AA4PQ58FG1 418 aa6.22□□□□□ -1.41
CUX1-220ENST00000607092 ZNF569Q5MCW4 686 aa6.22□□□□□ -1.41
CUX1-220ENST00000607092 CCDC122Q5T0U0 273 aa6.22□□□□□ -1.41
CUX1-220ENST00000607092 CDKAL1Q5VV42 579 aa6.22□□□□□ -1.41
CUX1-220ENST00000607092 DMRTA1Q5VZB9 504 aa6.22□□□□□ -1.41
CUX1-220ENST00000607092 LRRC66Q68CR7 880 aa6.22□□□□□ -1.41
CUX1-220ENST00000607092 MARK2Q7KZI7 788 aaKnown RBP6.22□□□□□ -1.41
CUX1-220ENST00000607092 TIPARPQ7Z3E1 657 aaKnown RBP6.22□□□□□ -1.41
CUX1-220ENST00000607092 PRSS42Q7Z5A4 293 aa6.22□□□□□ -1.41
CUX1-220ENST00000607092 KMT5CQ86Y97 462 aa6.22□□□□□ -1.41
CUX1-220ENST00000607092 SFTPA2Q8IWL1 248 aa6.22□□□□□ -1.41
CUX1-220ENST00000607092 CARFQ8N187 725 aa6.22□□□□□ -1.41
CUX1-220ENST00000607092 NETO2Q8NC67 525 aa6.22□□□□□ -1.41
CUX1-220ENST00000607092 OR8K5Q8NH50 307 aa6.22□□□□□ -1.41
CUX1-220ENST00000607092 CPT1CQ8TCG5 803 aa6.22□□□□□ -1.41
CUX1-220ENST00000607092 TEKT4Q8WW24 435 aa6.22□□□□□ -1.41
CUX1-220ENST00000607092 UBXN4Q92575 508 aa6.22□□□□□ -1.41
CUX1-220ENST00000607092 PMEPA1Q969W9 287 aa6.22□□□□□ -1.41
CUX1-220ENST00000607092 C9orf72Q96LT7 481 aa6.22□□□□□ -1.41
CUX1-220ENST00000607092 ERGIC2Q96RQ1 377 aa6.22□□□□□ -1.41
CUX1-220ENST00000607092 KCTD15Q96SI1 283 aaPredicted RBP6.22□□□□□ -1.41
CUX1-220ENST00000607092 PCDHB18PQ96TA0 734 aa6.22□□□□□ -1.41
CUX1-220ENST00000607092 CTRCQ99895 268 aa6.22□□□□□ -1.41
CUX1-220ENST00000607092 ZSCAN5AQ9BUG6 496 aa6.22□□□□□ -1.41
CUX1-220ENST00000607092 RIOK2Q9BVS4 552 aaKnown RBP6.22□□□□□ -1.41
CUX1-220ENST00000607092 ADGRE3Q9BY15 652 aa6.22□□□□□ -1.41
CUX1-220ENST00000607092 MAGEB5Q9BZ81 275 aa6.22□□□□□ -1.41
CUX1-220ENST00000607092 RAB33BQ9H082 229 aa6.22□□□□□ -1.41
CUX1-220ENST00000607092 ZNF768Q9H5H4 540 aaKnown RBP6.22□□□□□ -1.41
CUX1-220ENST00000607092 IGSF5Q9NSI5 407 aa6.22□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms