RNA–Protein interactions for RNA: ENST00000601689.1

UPF1-212, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 561 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-212ENST00000601689 TMEM8BA6NDV4 472 aa19.16■□□□□ 0.66
UPF1-212ENST00000601689 KMOO15229 486 aa19.16■□□□□ 0.66
UPF1-212ENST00000601689 NUAK1O60285 661 aa19.16■□□□□ 0.66
UPF1-212ENST00000601689 RALBP11234 206 aa19.16■□□□□ 0.66
UPF1-212ENST00000601689 C14orf28Q4W4Y0 310 aa19.16■□□□□ 0.66
UPF1-212ENST00000601689 KCTD11Q693B1 232 aa19.16■□□□□ 0.66
UPF1-212ENST00000601689 OGFOD3Q6PK18 319 aa19.16■□□□□ 0.66
UPF1-212ENST00000601689 LRRTM4Q86VH4 590 aa19.16■□□□□ 0.66
UPF1-212ENST00000601689 KLHDC8BQ8IXV7 354 aa19.16■□□□□ 0.66
UPF1-212ENST00000601689 TAB3Q8N5C8 712 aaPredicted RBP19.16■□□□□ 0.66
UPF1-212ENST00000601689 GPR156Q8NFN8 814 aa19.16■□□□□ 0.66
UPF1-212ENST00000601689 OR4K2Q8NGD2 314 aa19.16■□□□□ 0.66
UPF1-212ENST00000601689 CCL4L1Q8NHW4 92 aa19.16■□□□□ 0.66
UPF1-212ENST00000601689 ZNF398Q8TD17 642 aa19.16■□□□□ 0.66
UPF1-212ENST00000601689 SYNDIG1Q9H7V2 258 aa19.16■□□□□ 0.66
UPF1-212ENST00000601689 CAAP1Q9H8G2 361 aa19.16■□□□□ 0.66
UPF1-212ENST00000601689 IL26Q9NPH9 171 aa19.16■□□□□ 0.66
UPF1-212ENST00000601689 ATXN10Q9UBB4 475 aa19.16■□□□□ 0.66
UPF1-212ENST00000601689 SLC30A1Q9Y6M5 507 aa19.16■□□□□ 0.66
UPF1-212ENST00000601689 RHPN2P1A8MT19 583 aa19.15■□□□□ 0.66
UPF1-212ENST00000601689 PGRMC1O00264 195 aaKnown RBP19.15■□□□□ 0.66
UPF1-212ENST00000601689 CES2O00748 559 aa19.15■□□□□ 0.66
UPF1-212ENST00000601689 BUD23O43709 281 aaKnown RBP19.15■□□□□ 0.66
UPF1-212ENST00000601689 OPA1O60313 960 aa19.15■□□□□ 0.66
UPF1-212ENST00000601689 DNAJC6O75061 913 aa19.15■□□□□ 0.66
UPF1-212ENST00000601689 TCEA3O75764 348 aa19.15■□□□□ 0.66
UPF1-212ENST00000601689 PRAMEF1O95521 474 aa19.15■□□□□ 0.66
UPF1-212ENST00000601689 MT-CO3P00414 261 aa19.15■□□□□ 0.66
UPF1-212ENST00000601689 MYF5P13349 255 aa19.15■□□□□ 0.66
UPF1-212ENST00000601689 PNLIPP16233 465 aa19.15■□□□□ 0.66
UPF1-212ENST00000601689 TCP1P17987 556 aaKnown RBP19.15■□□□□ 0.66
UPF1-212ENST00000601689 AK4P27144 223 aaPredicted RBP19.15■□□□□ 0.66
UPF1-212ENST00000601689 INSM1Q01101 510 aaPredicted RBP19.15■□□□□ 0.66
UPF1-212ENST00000601689 TMEM115Q12893 351 aaPredicted RBP19.15■□□□□ 0.66
UPF1-212ENST00000601689 SEPT6Q14141 434 aa19.15■□□□□ 0.66
UPF1-212ENST00000601689 SPIDRQ14159 915 aa19.15■□□□□ 0.66
UPF1-212ENST00000601689 INSCQ1MX18 579 aa19.15■□□□□ 0.66
UPF1-212ENST00000601689 ATP13A5Q4VNC0 1218 aa19.15■□□□□ 0.66
UPF1-212ENST00000601689 UNQ6494/PRO21346Q6UXR6 183 aa19.15■□□□□ 0.66
UPF1-212ENST00000601689 AVL9Q8NBF6 648 aa19.15■□□□□ 0.66
UPF1-212ENST00000601689 KYQ8NBH2 561 aa19.15■□□□□ 0.66
UPF1-212ENST00000601689 HEXDCQ8WVB3 486 aa19.15■□□□□ 0.66
UPF1-212ENST00000601689 MAGOHBQ96A72 148 aaKnown RBP19.15■□□□□ 0.66
UPF1-212ENST00000601689 ULK4Q96C45 1275 aa19.15■□□□□ 0.66
UPF1-212ENST00000601689 GRAMD1AQ96CP6 724 aa19.15■□□□□ 0.66
UPF1-212ENST00000601689 CCDC3Q9BQI4 270 aa19.15■□□□□ 0.66
UPF1-212ENST00000601689 ASB8Q9H765 288 aa19.15■□□□□ 0.66
UPF1-212ENST00000601689 TTC7AQ9ULT0 858 aaPredicted RBP19.15■□□□□ 0.66
UPF1-212ENST00000601689 OAS3Q9Y6K5 1087 aaKnown RBP19.15■□□□□ 0.66
UPF1-212ENST00000601689 LY6G6EA0A0G2JKS1 128 aa19.14■□□□□ 0.65
UPF1-212ENST00000601689 NUDT21O43809 227 aaKnown RBP19.14■□□□□ 0.65
UPF1-212ENST00000601689 KCNJ13O60928 360 aa19.14■□□□□ 0.65
UPF1-212ENST00000601689 FUCA1P04066 466 aa19.14■□□□□ 0.65
UPF1-212ENST00000601689 APRTP07741 180 aa19.14■□□□□ 0.65
UPF1-212ENST00000601689 ZNF8P17098 575 aaPredicted RBP19.14■□□□□ 0.65
UPF1-212ENST00000601689 MSH3P20585 1137 aa19.14■□□□□ 0.65
UPF1-212ENST00000601689 ITGALP20701 1170 aa19.14■□□□□ 0.65
UPF1-212ENST00000601689 AKT1P31749 480 aa19.14■□□□□ 0.65
UPF1-212ENST00000601689 BASP1P80723 227 aaKnown RBP19.14■□□□□ 0.65
UPF1-212ENST00000601689 SARNPP82979 210 aaKnown RBP19.14■□□□□ 0.65
UPF1-212ENST00000601689 CHRNA6Q15825 494 aa19.14■□□□□ 0.65
UPF1-212ENST00000601689 SKIDA1Q1XH10 827 aa19.14■□□□□ 0.65
UPF1-212ENST00000601689 KCTD16Q68DU8 428 aa19.14■□□□□ 0.65
UPF1-212ENST00000601689 NYAP1Q6ZVC0 841 aa19.14■□□□□ 0.65
UPF1-212ENST00000601689 RASGEF1CQ8N431 466 aa19.14■□□□□ 0.65
UPF1-212ENST00000601689 GRK7Q8WTQ7 553 aa19.14■□□□□ 0.65
UPF1-212ENST00000601689 STYXQ8WUJ0 223 aa19.14■□□□□ 0.65
UPF1-212ENST00000601689 DCUN1D1Q96GG9 259 aa19.14■□□□□ 0.65
UPF1-212ENST00000601689 ZNF514Q96K75 400 aaPredicted RBP19.14■□□□□ 0.65
UPF1-212ENST00000601689 OSBPL9Q96SU4 736 aa19.14■□□□□ 0.65
UPF1-212ENST00000601689 ARFGAP3Q9NP61 516 aa19.14■□□□□ 0.65
UPF1-212ENST00000601689 LRIT1Q9P2V4 623 aa19.14■□□□□ 0.65
UPF1-212ENST00000601689 CRLS1Q9UJA2 301 aa19.14■□□□□ 0.65
UPF1-212ENST00000601689 U3KQA8 63 aa19.14■□□□□ 0.65
UPF1-212ENST00000601689 RP1P56715 2156 aa19.13■□□□□ 0.65
UPF1-212ENST00000601689 OR5K4A6NMS3 321 aa19.13■□□□□ 0.65
UPF1-212ENST00000601689 CFAP99D6REC4 459 aa19.13■□□□□ 0.65
UPF1-212ENST00000601689 TMX2-CTNND1H3BSU7 103 aa19.13■□□□□ 0.65
UPF1-212ENST00000601689 SRP72O76094 671 aaKnown RBP19.13■□□□□ 0.65
UPF1-212ENST00000601689 ACP5P13686 325 aa19.13■□□□□ 0.65
UPF1-212ENST00000601689 PPM1FP49593 454 aaPredicted RBP19.13■□□□□ 0.65
UPF1-212ENST00000601689 GNG11P61952 73 aa19.13■□□□□ 0.65
UPF1-212ENST00000601689 TARDBPQ13148 414 aaKnown RBP eCLIP19.13■□□□□ 0.65
UPF1-212ENST00000601689 OLIG2Q13516 323 aa19.13■□□□□ 0.65
UPF1-212ENST00000601689 SEMA5AQ13591 1074 aa19.13■□□□□ 0.65
UPF1-212ENST00000601689 POU6F1Q14863 301 aa19.13■□□□□ 0.65
UPF1-212ENST00000601689 SIX1Q15475 284 aaPredicted RBP19.13■□□□□ 0.65
UPF1-212ENST00000601689 RBM44Q6ZP01 1051 aaKnown RBP19.13■□□□□ 0.65
UPF1-212ENST00000601689 ADGRG6Q86SQ4 1221 aa19.13■□□□□ 0.65
UPF1-212ENST00000601689 TRAPPC5Q8IUR0 188 aa19.13■□□□□ 0.65
UPF1-212ENST00000601689 ACTRT1Q8TDG2 376 aa19.13■□□□□ 0.65
UPF1-212ENST00000601689 CCDC74AQ96AQ1 378 aa19.13■□□□□ 0.65
UPF1-212ENST00000601689 TTC1Q99614 292 aa19.13■□□□□ 0.65
UPF1-212ENST00000601689 OSGEPL1Q9H4B0 414 aa19.13■□□□□ 0.65
UPF1-212ENST00000601689 SPATS2LQ9NUQ6 558 aaKnown RBP19.13■□□□□ 0.65
UPF1-212ENST00000601689 SMOXQ9NWM0 555 aa19.13■□□□□ 0.65
UPF1-212ENST00000601689 SNX12Q9UMY4 172 aa19.13■□□□□ 0.65
UPF1-212ENST00000601689 MYLKQ15746 1914 aa19.13■□□□□ 0.65
UPF1-212ENST00000601689 ASXL3Q9C0F0 2248 aa19.12■□□□□ 0.65
UPF1-212ENST00000601689 HEATR9A2RTY3 570 aa19.12■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms