RNA–Protein interactions for RNA: ENST00000600689.1

UPF1-210, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,084 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-210ENST00000600689 GLYATQ6IB77 296 aa18.24■□□□□ 0.51
UPF1-210ENST00000600689 SLCO6A1Q86UG4 719 aa18.24■□□□□ 0.51
UPF1-210ENST00000600689 KIAA2013Q8IYS2 634 aa18.24■□□□□ 0.51
UPF1-210ENST00000600689 ARRDC4Q8NCT1 418 aa18.24■□□□□ 0.51
UPF1-210ENST00000600689 TRUB1Q8WWH5 349 aaKnown RBP18.24■□□□□ 0.51
UPF1-210ENST00000600689 FIG4Q92562 907 aa18.24■□□□□ 0.51
UPF1-210ENST00000600689 SLC2A13Q96QE2 648 aa18.24■□□□□ 0.51
UPF1-210ENST00000600689 DOK1Q99704 481 aa18.24■□□□□ 0.51
UPF1-210ENST00000600689 MIR1-1HGQ9H1L0 117 aa18.24■□□□□ 0.51
UPF1-210ENST00000600689 CRTAC1Q9NQ79 661 aa18.24■□□□□ 0.51
UPF1-210ENST00000600689 PNMA8BQ9ULN7 279 aaPredicted RBP18.24■□□□□ 0.51
UPF1-210ENST00000600689 CPQQ9Y646 472 aa18.24■□□□□ 0.51
UPF1-210ENST00000600689 NRCAMQ92823 1304 aa18.24■□□□□ 0.51
UPF1-210ENST00000600689 RRN3P2A6NIE6 340 aa18.24■□□□□ 0.51
UPF1-210ENST00000600689 GNGT2O14610 69 aa18.24■□□□□ 0.51
UPF1-210ENST00000600689 CD86P42081 329 aa18.24■□□□□ 0.51
UPF1-210ENST00000600689 BNIP2Q12982 314 aa18.24■□□□□ 0.51
UPF1-210ENST00000600689 MFSD10Q14728 455 aa18.24■□□□□ 0.51
UPF1-210ENST00000600689 OR4D1Q15615 310 aa18.24■□□□□ 0.51
UPF1-210ENST00000600689 CADM3Q8N126 398 aa18.24■□□□□ 0.51
UPF1-210ENST00000600689 FAM86B1Q8N7N1 296 aa18.24■□□□□ 0.51
UPF1-210ENST00000600689 Q8N9G6 341 aaPredicted RBP18.24■□□□□ 0.51
UPF1-210ENST00000600689 VAT1Q99536 393 aa18.24■□□□□ 0.51
UPF1-210ENST00000600689 TOR3AQ9H497 397 aa18.24■□□□□ 0.51
UPF1-210ENST00000600689 CD320Q9NPF0 282 aa18.24■□□□□ 0.51
UPF1-210ENST00000600689 PRDM8Q9NQV8 689 aa18.24■□□□□ 0.51
UPF1-210ENST00000600689 BAG5Q9UL15 447 aa18.24■□□□□ 0.51
UPF1-210ENST00000600689 INVSQ9Y283 1065 aa18.24■□□□□ 0.51
UPF1-210ENST00000600689 CCDC154A6NI56 674 aa18.23■□□□□ 0.51
UPF1-210ENST00000600689 MEIS3P2A8K0S8 358 aa18.23■□□□□ 0.51
UPF1-210ENST00000600689 CNOT3O75175 753 aaKnown RBP18.23■□□□□ 0.51
UPF1-210ENST00000600689 CCR1P32246 355 aa18.23■□□□□ 0.51
UPF1-210ENST00000600689 GGT5P36269 586 aa18.23■□□□□ 0.51
UPF1-210ENST00000600689 SELPLGQ14242 412 aa18.23■□□□□ 0.51
UPF1-210ENST00000600689 SNX17Q15036 470 aa18.23■□□□□ 0.51
UPF1-210ENST00000600689 XAF1Q6GPH4 301 aa18.23■□□□□ 0.51
UPF1-210ENST00000600689 SLC22A9Q8IVM8 553 aa18.23■□□□□ 0.51
UPF1-210ENST00000600689 PSD4Q8NDX1 1056 aa18.23■□□□□ 0.51
UPF1-210ENST00000600689 PCED1BQ96HM7 432 aa18.23■□□□□ 0.51
UPF1-210ENST00000600689 CDK15Q96Q40 435 aa18.23■□□□□ 0.51
UPF1-210ENST00000600689 PCDHGA8Q9Y5G5 932 aa18.23■□□□□ 0.51
UPF1-210ENST00000600689 OAS3Q9Y6K5 1087 aaKnown RBP18.23■□□□□ 0.51
UPF1-210ENST00000600689 XPNPEP2O43895 674 aa18.23■□□□□ 0.51
UPF1-210ENST00000600689 C1RP00736 705 aa18.23■□□□□ 0.51
UPF1-210ENST00000600689 HTR1BP28222 390 aa18.23■□□□□ 0.51
UPF1-210ENST00000600689 ACADVLP49748 655 aa18.23■□□□□ 0.51
UPF1-210ENST00000600689 LAPTM4AQ15012 233 aa18.23■□□□□ 0.51
UPF1-210ENST00000600689 ACAP2Q15057 778 aa18.23■□□□□ 0.51
UPF1-210ENST00000600689 CNTN4Q8IWV2 1026 aa18.23■□□□□ 0.51
UPF1-210ENST00000600689 SLC22A17Q8WUG5 538 aa18.23■□□□□ 0.51
UPF1-210ENST00000600689 GLMNQ92990 594 aa18.23■□□□□ 0.51
UPF1-210ENST00000600689 TBATAQ96M53 351 aa18.23■□□□□ 0.51
UPF1-210ENST00000600689 NSMCE2Q96MF7 247 aa18.23■□□□□ 0.51
UPF1-210ENST00000600689 TBCDQ9BTW9 1192 aa18.23■□□□□ 0.51
UPF1-210ENST00000600689 ZNF229Q9UJW7 825 aa18.23■□□□□ 0.51
UPF1-210ENST00000600689 POU2F3Q9UKI9 436 aa18.23■□□□□ 0.51
UPF1-210ENST00000600689 GPC6Q9Y625 555 aaPredicted RBP18.23■□□□□ 0.51
UPF1-210ENST00000600689 PIRO00625 290 aa18.22■□□□□ 0.51
UPF1-210ENST00000600689 KPNA4O00629 521 aaPredicted RBP18.22■□□□□ 0.51
UPF1-210ENST00000600689 MYL3P08590 195 aa18.22■□□□□ 0.51
UPF1-210ENST00000600689 HSD17B1P14061 328 aa18.22■□□□□ 0.51
UPF1-210ENST00000600689 AGTR2P50052 363 aa18.22■□□□□ 0.51
UPF1-210ENST00000600689 AFF1P51825 1210 aaKnown RBP18.22■□□□□ 0.51
UPF1-210ENST00000600689 ARSFP54793 590 aa18.22■□□□□ 0.51
UPF1-210ENST00000600689 MINDY1Q8N5J2 469 aa18.22■□□□□ 0.51
UPF1-210ENST00000600689 BLOC1S5Q8TDH9 187 aa18.22■□□□□ 0.51
UPF1-210ENST00000600689 ZNF560Q96MR9 790 aa18.22■□□□□ 0.51
UPF1-210ENST00000600689 ALPK1Q96QP1 1244 aa18.22■□□□□ 0.51
UPF1-210ENST00000600689 BDH2Q9BUT1 245 aa18.22■□□□□ 0.51
UPF1-210ENST00000600689 ABCD2Q9UBJ2 740 aa18.22■□□□□ 0.51
UPF1-210ENST00000600689 PCDHB3Q9Y5E6 796 aa18.22■□□□□ 0.51
UPF1-210ENST00000600689 PCDHA9Q9Y5H5 950 aa18.22■□□□□ 0.51
UPF1-210ENST00000600689 CLASP2O75122 1294 aaKnown RBP18.22■□□□□ 0.51
UPF1-210ENST00000600689 GPIP06744 558 aa18.22■□□□□ 0.51
UPF1-210ENST00000600689 SCNN1AP37088 669 aa18.22■□□□□ 0.51
UPF1-210ENST00000600689 PIGAP37287 484 aa18.22■□□□□ 0.51
UPF1-210ENST00000600689 GEMP55040 296 aa18.22■□□□□ 0.51
UPF1-210ENST00000600689 HERVK_113P63132 956 aa18.22■□□□□ 0.51
UPF1-210ENST00000600689 IFITM3Q01628 133 aa18.22■□□□□ 0.51
UPF1-210ENST00000600689 NRG1Q02297 640 aaPredicted RBP18.22■□□□□ 0.51
UPF1-210ENST00000600689 DCP1BQ8IZD4 617 aaKnown RBP18.22■□□□□ 0.51
UPF1-210ENST00000600689 SPARTQ8N0X7 666 aa18.22■□□□□ 0.51
UPF1-210ENST00000600689 ZMIZ2Q8NF64 920 aa18.22■□□□□ 0.51
UPF1-210ENST00000600689 HTRA1Q92743 480 aa18.22■□□□□ 0.51
UPF1-210ENST00000600689 SH3YL1Q96HL8 342 aaPredicted RBP18.22■□□□□ 0.51
UPF1-210ENST00000600689 IL12RB2Q99665 862 aa18.22■□□□□ 0.51
UPF1-210ENST00000600689 ERVK-6Q9BXR3 956 aa18.22■□□□□ 0.51
UPF1-210ENST00000600689 TREX1Q9NSU2 369 aa18.22■□□□□ 0.51
UPF1-210ENST00000600689 ATAD3AQ9NVI7 634 aa18.22■□□□□ 0.51
UPF1-210ENST00000600689 SCN4AP35499 1836 aa18.22■□□□□ 0.51
UPF1-210ENST00000600689 MBLAC1A4D2B0 266 aaPredicted RBP18.21■□□□□ 0.51
UPF1-210ENST00000600689 ASPDHA6ND91 283 aa18.21■□□□□ 0.51
UPF1-210ENST00000600689 A6NL46 340 aa18.21■□□□□ 0.51
UPF1-210ENST00000600689 SOBPA7XYQ1 873 aa18.21■□□□□ 0.51
UPF1-210ENST00000600689 H0Y858 1186 aa18.21■□□□□ 0.51
UPF1-210ENST00000600689 GMNNO75496 209 aa18.21■□□□□ 0.51
UPF1-210ENST00000600689 THRBP10828 461 aa18.21■□□□□ 0.51
UPF1-210ENST00000600689 HRH2P25021 359 aa18.21■□□□□ 0.51
UPF1-210ENST00000600689 TGFBR1P36897 503 aa18.21■□□□□ 0.51
UPF1-210ENST00000600689 MTHFRP42898 656 aa18.21■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms