RNA–Protein interactions for RNA: ENST00000600012.5

UPF1-208, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 5

Gene UPF1, Length 501 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-208ENST00000600012 H3BM21 787 aa12.64□□□□□ -0.39
UPF1-208ENST00000600012 K7ESM1 405 aa12.64□□□□□ -0.39
UPF1-208ENST00000600012 AP1G1O43747 822 aa12.64□□□□□ -0.39
UPF1-208ENST00000600012 DXOO77932 396 aaKnown RBP12.64□□□□□ -0.39
UPF1-208ENST00000600012 TTC4O95801 387 aa12.64□□□□□ -0.39
UPF1-208ENST00000600012 GSRP00390 522 aa12.64□□□□□ -0.39
UPF1-208ENST00000600012 ADRB3P13945 408 aa12.64□□□□□ -0.39
UPF1-208ENST00000600012 CES1P23141 567 aa12.64□□□□□ -0.39
UPF1-208ENST00000600012 GPX6P59796 221 aa12.64□□□□□ -0.39
UPF1-208ENST00000600012 AP1S1P61966 158 aa12.64□□□□□ -0.39
UPF1-208ENST00000600012 SNRPD1P62314 119 aaKnown RBP12.64□□□□□ -0.39
UPF1-208ENST00000600012 CDK18Q07002 472 aa12.64□□□□□ -0.39
UPF1-208ENST00000600012 SLC1A5Q15758 541 aa12.64□□□□□ -0.39
UPF1-208ENST00000600012 SIRPB2Q5JXA9 342 aa12.64□□□□□ -0.39
UPF1-208ENST00000600012 CFAP58Q5T655 872 aa12.64□□□□□ -0.39
UPF1-208ENST00000600012 CASC4Q6P4E1 433 aa12.64□□□□□ -0.39
UPF1-208ENST00000600012 RANBP10Q6VN20 620 aa12.64□□□□□ -0.39
UPF1-208ENST00000600012 OR2W6PQ8NHA6 318 aa12.64□□□□□ -0.39
UPF1-208ENST00000600012 PDCD6IPQ8WUM4 868 aaKnown RBP12.64□□□□□ -0.39
UPF1-208ENST00000600012 ISG20Q96AZ6 181 aaKnown RBP12.64□□□□□ -0.39
UPF1-208ENST00000600012 STAMBPL1Q96FJ0 436 aa12.64□□□□□ -0.39
UPF1-208ENST00000600012 FEM1CQ96JP0 617 aa12.64□□□□□ -0.39
UPF1-208ENST00000600012 ZIM3Q96PE6 472 aa12.64□□□□□ -0.39
UPF1-208ENST00000600012 TRIB3Q96RU7 358 aa12.64□□□□□ -0.39
UPF1-208ENST00000600012 EBNA1BP2Q99848 306 aaKnown RBP12.64□□□□□ -0.39
UPF1-208ENST00000600012 HEPHQ9BQS7 1158 aa12.64□□□□□ -0.39
UPF1-208ENST00000600012 SLC17A9Q9BYT1 436 aa12.64□□□□□ -0.39
UPF1-208ENST00000600012 VPS37BQ9H9H4 285 aa12.64□□□□□ -0.39
UPF1-208ENST00000600012 LRRC4CQ9HCJ2 640 aa12.64□□□□□ -0.39
UPF1-208ENST00000600012 PLAAQ9Y263 795 aa12.64□□□□□ -0.39
UPF1-208ENST00000600012 RP1P56715 2156 aa12.64□□□□□ -0.39
UPF1-208ENST00000600012 LY6G6EA0A0G2JKS1 128 aa12.63□□□□□ -0.39
UPF1-208ENST00000600012 SPTY2D1-AS1A0A0U1RR47 76 aa12.63□□□□□ -0.39
UPF1-208ENST00000600012 LOC285095A0A1B0GVY8 99 aa12.63□□□□□ -0.39
UPF1-208ENST00000600012 POM121BA6NF01 834 aa12.63□□□□□ -0.39
UPF1-208ENST00000600012 SDR42E2A6NKP2 422 aa12.63□□□□□ -0.39
UPF1-208ENST00000600012 MAP2K7O14733 419 aa12.63□□□□□ -0.39
UPF1-208ENST00000600012 LZTS3O60299 673 aaPredicted RBP12.63□□□□□ -0.39
UPF1-208ENST00000600012 CSO75390 466 aaKnown RBP12.63□□□□□ -0.39
UPF1-208ENST00000600012 NDST3O95803 873 aa12.63□□□□□ -0.39
UPF1-208ENST00000600012 CSF2P04141 144 aa12.63□□□□□ -0.39
UPF1-208ENST00000600012 SHBGP04278 402 aa12.63□□□□□ -0.39
UPF1-208ENST00000600012 PRKCGP05129 697 aa12.63□□□□□ -0.39
UPF1-208ENST00000600012 MPOP05164 745 aa12.63□□□□□ -0.39
UPF1-208ENST00000600012 PDHA1P08559 390 aa12.63□□□□□ -0.39
UPF1-208ENST00000600012 NME1P15531 152 aaKnown RBP12.63□□□□□ -0.39
UPF1-208ENST00000600012 SSTR1P30872 391 aa12.63□□□□□ -0.39
UPF1-208ENST00000600012 RABIFP47224 123 aa12.63□□□□□ -0.39
UPF1-208ENST00000600012 LSSP48449 732 aa12.63□□□□□ -0.39
UPF1-208ENST00000600012 CSNK1DP48730 415 aa12.63□□□□□ -0.39
UPF1-208ENST00000600012 NPY2RP49146 381 aa12.63□□□□□ -0.39
UPF1-208ENST00000600012 CCNHP51946 323 aaPredicted RBP12.63□□□□□ -0.39
UPF1-208ENST00000600012 UCNP55089 124 aa12.63□□□□□ -0.39
UPF1-208ENST00000600012 ERVPABLB-1P60509 514 aa12.63□□□□□ -0.39
UPF1-208ENST00000600012 CXADRP78310 365 aa12.63□□□□□ -0.39
UPF1-208ENST00000600012 GABREP78334 506 aa12.63□□□□□ -0.39
UPF1-208ENST00000600012 CBLBQ13191 982 aa12.63□□□□□ -0.39
UPF1-208ENST00000600012 SEPT6Q14141 434 aa12.63□□□□□ -0.39
UPF1-208ENST00000600012 FGL2Q14314 439 aa12.63□□□□□ -0.39
UPF1-208ENST00000600012 FZD2Q14332 565 aa12.63□□□□□ -0.39
UPF1-208ENST00000600012 SLC29A2Q14542 456 aa12.63□□□□□ -0.39
UPF1-208ENST00000600012 POU6F1Q14863 301 aa12.63□□□□□ -0.39
UPF1-208ENST00000600012 ZNF542PQ5EBM4 170 aa12.63□□□□□ -0.39
UPF1-208ENST00000600012 CARD16Q5EG05 197 aa12.63□□□□□ -0.39
UPF1-208ENST00000600012 RALGPS1Q5JS13 557 aa12.63□□□□□ -0.39
UPF1-208ENST00000600012 BROXQ5VW32 411 aa12.63□□□□□ -0.39
UPF1-208ENST00000600012 ZCCHC8Q6NZY4 707 aaKnown RBP12.63□□□□□ -0.39
UPF1-208ENST00000600012 PARGQ86W56 976 aa12.63□□□□□ -0.39
UPF1-208ENST00000600012 CAMK1DQ8IU85 385 aa12.63□□□□□ -0.39
UPF1-208ENST00000600012 PALM2Q8IXS6 379 aa12.63□□□□□ -0.39
UPF1-208ENST00000600012 ZNF548Q8NEK5 533 aaPredicted RBP12.63□□□□□ -0.39
UPF1-208ENST00000600012 LPCAT1Q8NF37 534 aa12.63□□□□□ -0.39
UPF1-208ENST00000600012 LRRC39Q96DD0 335 aa12.63□□□□□ -0.39
UPF1-208ENST00000600012 HIC2Q96JB3 615 aa12.63□□□□□ -0.39
UPF1-208ENST00000600012 BMFQ96LC9 184 aa12.63□□□□□ -0.39
UPF1-208ENST00000600012 TTC25Q96NG3 672 aa12.63□□□□□ -0.39
UPF1-208ENST00000600012 SMIM14Q96QK8 99 aa12.63□□□□□ -0.39
UPF1-208ENST00000600012 ABCG4Q9H172 646 aa12.63□□□□□ -0.39
UPF1-208ENST00000600012 ZDHHC6Q9H6R6 413 aa12.63□□□□□ -0.39
UPF1-208ENST00000600012 POLR1BQ9H9Y6 1135 aa12.63□□□□□ -0.39
UPF1-208ENST00000600012 PLAC1Q9HBJ0 212 aa12.63□□□□□ -0.39
UPF1-208ENST00000600012 ARNT2Q9HBZ2 717 aa12.63□□□□□ -0.39
UPF1-208ENST00000600012 NCKIPSDQ9NZQ3 722 aa12.63□□□□□ -0.39
UPF1-208ENST00000600012 BFARQ9NZS9 450 aa12.63□□□□□ -0.39
UPF1-208ENST00000600012 HECAQ9UBI9 543 aaPredicted RBP12.63□□□□□ -0.39
UPF1-208ENST00000600012 ZC3H7BQ9UGR2 993 aaKnown RBP12.63□□□□□ -0.39
UPF1-208ENST00000600012 FADS3Q9Y5Q0 445 aa12.63□□□□□ -0.39
UPF1-208ENST00000600012 CSNK1G3Q9Y6M4 447 aa12.63□□□□□ -0.39
UPF1-208ENST00000600012 U3KQA8 63 aa12.63□□□□□ -0.39
UPF1-208ENST00000600012 COL27A1Q8IZC6 1860 aaPredicted RBP12.62□□□□□ -0.39
UPF1-208ENST00000600012 ZNF106Q9H2Y7 1883 aaKnown RBP12.62□□□□□ -0.39
UPF1-208ENST00000600012 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP12.62□□□□□ -0.39
UPF1-208ENST00000600012 CCDC78A2IDD5 438 aa12.62□□□□□ -0.39
UPF1-208ENST00000600012 AP3B1O00203 1094 aa12.62□□□□□ -0.39
UPF1-208ENST00000600012 FPGTO14772 594 aa12.62□□□□□ -0.39
UPF1-208ENST00000600012 PAK4O96013 591 aaPredicted RBP12.62□□□□□ -0.39
UPF1-208ENST00000600012 PRLP01236 227 aa12.62□□□□□ -0.39
UPF1-208ENST00000600012 FGF1P05230 155 aa12.62□□□□□ -0.39
UPF1-208ENST00000600012 PIRTP0C851 137 aa12.62□□□□□ -0.39
UPF1-208ENST00000600012 HLA-DPA1P20036 260 aa12.62□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms