RNA–Protein interactions for RNA: ENST00000598471.1

UPF1-206, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 582 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-206ENST00000598471 CLPBQ9H078 707 aa15.34■□□□□ 0.05
UPF1-206ENST00000598471 ZDHHC3Q9NYG2 299 aa15.34■□□□□ 0.05
UPF1-206ENST00000598471 SLC39A10Q9ULF5 831 aa15.34■□□□□ 0.05
UPF1-206ENST00000598471 MTO1Q9Y2Z2 717 aaKnown RBP15.34■□□□□ 0.05
UPF1-206ENST00000598471 PCDHB1Q9Y5F3 818 aa15.34■□□□□ 0.05
UPF1-206ENST00000598471 MUC3AQ02505 3323 aa15.33■□□□□ 0.05
UPF1-206ENST00000598471 A0A1W2PQU0 124 aa15.33■□□□□ 0.04
UPF1-206ENST00000598471 PRR23AA6NEV1 266 aa15.33■□□□□ 0.04
UPF1-206ENST00000598471 H3BMM5 538 aa15.33■□□□□ 0.04
UPF1-206ENST00000598471 PRMT5O14744 637 aaPredicted RBP15.33■□□□□ 0.04
UPF1-206ENST00000598471 GPR37L1O60883 481 aa15.33■□□□□ 0.04
UPF1-206ENST00000598471 IGLV3-19P01714 112 aa15.33■□□□□ 0.04
UPF1-206ENST00000598471 ESR1P03372 595 aa15.33■□□□□ 0.04
UPF1-206ENST00000598471 GM2AP17900 193 aa15.33■□□□□ 0.04
UPF1-206ENST00000598471 TYK2P29597 1187 aa15.33■□□□□ 0.04
UPF1-206ENST00000598471 OAS2P29728 719 aaKnown RBP15.33■□□□□ 0.04
UPF1-206ENST00000598471 AKT1P31749 480 aa15.33■□□□□ 0.04
UPF1-206ENST00000598471 ABCG1P45844 678 aa15.33■□□□□ 0.04
UPF1-206ENST00000598471 GPR1P46091 355 aa15.33■□□□□ 0.04
UPF1-206ENST00000598471 CDKN1CP49918 316 aaPredicted RBP15.33■□□□□ 0.04
UPF1-206ENST00000598471 CCR3P51677 355 aa15.33■□□□□ 0.04
UPF1-206ENST00000598471 ADARP55265 1226 aaKnown RBP15.33■□□□□ 0.04
UPF1-206ENST00000598471 USP10Q14694 798 aaKnown RBP15.33■□□□□ 0.04
UPF1-206ENST00000598471 LDLRAP1Q5SW96 308 aa15.33■□□□□ 0.04
UPF1-206ENST00000598471 SEL1L3Q68CR1 1132 aa15.33■□□□□ 0.04
UPF1-206ENST00000598471 RAET1GQ6H3X3 334 aa15.33■□□□□ 0.04
UPF1-206ENST00000598471 MICALCLQ6ZW33 695 aa15.33■□□□□ 0.04
UPF1-206ENST00000598471 EXOC3L1Q86VI1 746 aa15.33■□□□□ 0.04
UPF1-206ENST00000598471 PHYKPLQ8IUZ5 450 aa15.33■□□□□ 0.04
UPF1-206ENST00000598471 KRT222Q8N1A0 295 aa15.33■□□□□ 0.04
UPF1-206ENST00000598471 ARFGAP2Q8N6H7 521 aa15.33■□□□□ 0.04
UPF1-206ENST00000598471 GDAP1Q8TB36 358 aa15.33■□□□□ 0.04
UPF1-206ENST00000598471 DCUN1D1Q96GG9 259 aa15.33■□□□□ 0.04
UPF1-206ENST00000598471 CRYL1Q9Y2S2 319 aa15.33■□□□□ 0.04
UPF1-206ENST00000598471 TECTAO75443 2155 aa15.32■□□□□ 0.04
UPF1-206ENST00000598471 FAM47DPA6NHR8 397 aa15.32■□□□□ 0.04
UPF1-206ENST00000598471 TPP1O14773 563 aa15.32■□□□□ 0.04
UPF1-206ENST00000598471 GPR39O43194 453 aa15.32■□□□□ 0.04
UPF1-206ENST00000598471 SEMA4FO95754 770 aa15.32■□□□□ 0.04
UPF1-206ENST00000598471 MPOP05164 745 aa15.32■□□□□ 0.04
UPF1-206ENST00000598471 DCNP07585 359 aaKnown RBP15.32■□□□□ 0.04
UPF1-206ENST00000598471 F7P08709 466 aaPredicted RBP15.32■□□□□ 0.04
UPF1-206ENST00000598471 BRAFP15056 766 aa15.32■□□□□ 0.04
UPF1-206ENST00000598471 STMN1P16949 149 aa15.32■□□□□ 0.04
UPF1-206ENST00000598471 KRT4P19013 534 aa15.32■□□□□ 0.04
UPF1-206ENST00000598471 SAT1P21673 171 aa15.32■□□□□ 0.04
UPF1-206ENST00000598471 RPS3P23396 243 aaKnown RBP eCLIP15.32■□□□□ 0.042e-7■■■■□ 25.4
UPF1-206ENST00000598471 CRABP2P29373 138 aa15.32■□□□□ 0.04
UPF1-206ENST00000598471 NSG1P42857 185 aa15.32■□□□□ 0.04
UPF1-206ENST00000598471 CXCL12P48061 93 aa15.32■□□□□ 0.04
UPF1-206ENST00000598471 MTAPQ13126 283 aa15.32■□□□□ 0.04
UPF1-206ENST00000598471 LRRC14Q15048 493 aa15.32■□□□□ 0.04
UPF1-206ENST00000598471 TMEM259Q4ZIN3 620 aa15.32■□□□□ 0.04
UPF1-206ENST00000598471 TAF1BQ53T94 588 aaPredicted RBP15.32■□□□□ 0.04
UPF1-206ENST00000598471 ZNF789Q5FWF6 425 aa15.32■□□□□ 0.04
UPF1-206ENST00000598471 GPRC6AQ5T6X5 926 aa15.32■□□□□ 0.04
UPF1-206ENST00000598471 RAPH1Q70E73 1250 aa15.32■□□□□ 0.04
UPF1-206ENST00000598471 CCDC91Q7Z6B0 441 aa15.32■□□□□ 0.04
UPF1-206ENST00000598471 TRIM69Q86WT6 500 aa15.32■□□□□ 0.04
UPF1-206ENST00000598471 SLC41A1Q8IVJ1 513 aa15.32■□□□□ 0.04
UPF1-206ENST00000598471 DDHD1Q8NEL9 900 aa15.32■□□□□ 0.04
UPF1-206ENST00000598471 BTN2A2Q8WVV5 523 aa15.32■□□□□ 0.04
UPF1-206ENST00000598471 ASB12Q8WXK4 309 aa15.32■□□□□ 0.04
UPF1-206ENST00000598471 GLYATL1Q969I3 302 aa15.32■□□□□ 0.04
UPF1-206ENST00000598471 ISL2Q96A47 359 aa15.32■□□□□ 0.04
UPF1-206ENST00000598471 AARSD1Q9BTE6 412 aaKnown RBP15.32■□□□□ 0.04
UPF1-206ENST00000598471 LRFN3Q9BTN0 628 aa15.32■□□□□ 0.04
UPF1-206ENST00000598471 C1QTNF2Q9BXJ5 285 aa15.32■□□□□ 0.04
UPF1-206ENST00000598471 SLC17A9Q9BYT1 436 aa15.32■□□□□ 0.04
UPF1-206ENST00000598471 ZCCHC2Q9C0B9 1178 aaKnown RBP15.32■□□□□ 0.04
UPF1-206ENST00000598471 SSU72Q9NP77 194 aaKnown RBP15.32■□□□□ 0.04
UPF1-206ENST00000598471 SNX15Q9NRS6 342 aa15.32■□□□□ 0.04
UPF1-206ENST00000598471 FAM53CQ9NYF3 392 aa15.32■□□□□ 0.04
UPF1-206ENST00000598471 GNPTGQ9UJJ9 305 aa15.32■□□□□ 0.04
UPF1-206ENST00000598471 TLK1Q9UKI8 766 aa15.32■□□□□ 0.04
UPF1-206ENST00000598471 CYP8B1Q9UNU6 501 aa15.32■□□□□ 0.04
UPF1-206ENST00000598471 SMG5Q9UPR3 1016 aaKnown RBP15.32■□□□□ 0.04
UPF1-206ENST00000598471 ZFR2Q9UPR6 939 aaKnown RBP15.32■□□□□ 0.04
UPF1-206ENST00000598471 PLXNA2O75051 1894 aa15.31■□□□□ 0.04
UPF1-206ENST00000598471 A0A1W2PPM1 405 aa15.31■□□□□ 0.04
UPF1-206ENST00000598471 HMX2A2RU54 273 aa15.31■□□□□ 0.04
UPF1-206ENST00000598471 QSOX1O00391 747 aa15.31■□□□□ 0.04
UPF1-206ENST00000598471 PI15O43692 258 aa15.31■□□□□ 0.04
UPF1-206ENST00000598471 RFPL1O75677 317 aa15.31■□□□□ 0.04
UPF1-206ENST00000598471 RHOBTB1O94844 696 aa15.31■□□□□ 0.04
UPF1-206ENST00000598471 ALDOAP04075 364 aaKnown RBP15.31■□□□□ 0.04
UPF1-206ENST00000598471 PKMP14618 531 aaKnown RBP15.31■□□□□ 0.04
UPF1-206ENST00000598471 NR1D1P20393 614 aa15.31■□□□□ 0.04
UPF1-206ENST00000598471 MSH3P20585 1137 aa15.31■□□□□ 0.04
UPF1-206ENST00000598471 TEAD1P28347 426 aa15.31■□□□□ 0.04
UPF1-206ENST00000598471 FMO4P31512 558 aa15.31■□□□□ 0.04
UPF1-206ENST00000598471 HPDP32754 393 aaPredicted RBP15.31■□□□□ 0.04
UPF1-206ENST00000598471 RAB10P61026 200 aa15.31■□□□□ 0.04
UPF1-206ENST00000598471 HECTD2Q5U5R9 776 aa15.31■□□□□ 0.04
UPF1-206ENST00000598471 PTRHD1Q6GMV3 140 aaKnown RBP15.31■□□□□ 0.04
UPF1-206ENST00000598471 BMP8AQ7Z5Y6 402 aa15.31■□□□□ 0.04
UPF1-206ENST00000598471 FAM76AQ8TAV0 307 aa15.31■□□□□ 0.04
UPF1-206ENST00000598471 SERAC1Q96JX3 654 aa15.31■□□□□ 0.04
UPF1-206ENST00000598471 TSNARE1Q96NA8 513 aa15.31■□□□□ 0.04
UPF1-206ENST00000598471 NDNQ99608 321 aa15.31■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms