RNA–Protein interactions for RNA: ENST00000596842.5

UPF1-204, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,825 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-204ENST00000596842 CCDC138Q96M89 665 aa15.17■□□□□ 0.02
UPF1-204ENST00000596842 HGH1Q9BTY7 390 aa15.17■□□□□ 0.02
UPF1-204ENST00000596842 OSER1Q9NX31 292 aa15.17■□□□□ 0.02
UPF1-204ENST00000596842 U3KQV3 271 aa15.17■□□□□ 0.02
UPF1-204ENST00000596842 ZBTB11O95625 1053 aaPredicted RBP15.17■□□□□ 0.02
UPF1-204ENST00000596842 CD1DP15813 335 aa15.17■□□□□ 0.02
UPF1-204ENST00000596842 RPS9P46781 194 aaKnown RBP15.17■□□□□ 0.02
UPF1-204ENST00000596842 DGKQP52824 942 aa15.17■□□□□ 0.02
UPF1-204ENST00000596842 OXCT1P55809 520 aa15.17■□□□□ 0.02
UPF1-204ENST00000596842 UGT3A2Q3SY77 523 aa15.17■□□□□ 0.02
UPF1-204ENST00000596842 BRI3BPQ8WY22 251 aa15.17■□□□□ 0.02
UPF1-204ENST00000596842 SGCDQ92629 289 aa15.17■□□□□ 0.02
UPF1-204ENST00000596842 BHMTQ93088 406 aa15.17■□□□□ 0.02
UPF1-204ENST00000596842 GPR21Q99679 349 aa15.17■□□□□ 0.02
UPF1-204ENST00000596842 ZMYM5Q9UJ78 669 aa15.17■□□□□ 0.02
UPF1-204ENST00000596842 CHEK2O96017 543 aa15.17■□□□□ 0.02
UPF1-204ENST00000596842 THPOP40225 353 aa15.17■□□□□ 0.02
UPF1-204ENST00000596842 ANKS6Q68DC2 871 aa15.17■□□□□ 0.02
UPF1-204ENST00000596842 KDELC1Q6UW63 502 aa15.17■□□□□ 0.02
UPF1-204ENST00000596842 CHID1Q9BWS9 393 aa15.17■□□□□ 0.02
UPF1-204ENST00000596842 FANCEQ9HB96 536 aa15.17■□□□□ 0.02
UPF1-204ENST00000596842 CATSPERZQ9NTU4 200 aa15.17■□□□□ 0.02
UPF1-204ENST00000596842 CNOT11Q9UKZ1 510 aaKnown RBP15.17■□□□□ 0.02
UPF1-204ENST00000596842 ATP11BQ9Y2G3 1177 aa15.17■□□□□ 0.02
UPF1-204ENST00000596842 PCP4L1A6NKN8 68 aa15.16■□□□□ 0.02
UPF1-204ENST00000596842 IQCF5A8MTL0 148 aa15.16■□□□□ 0.02
UPF1-204ENST00000596842 NOBOXO60393 691 aa15.16■□□□□ 0.02
UPF1-204ENST00000596842 RAMP2O60895 175 aa15.16■□□□□ 0.02
UPF1-204ENST00000596842 RSL1D1O76021 490 aaKnown RBP15.16■□□□□ 0.02
UPF1-204ENST00000596842 GUCA1CO95843 209 aa15.16■□□□□ 0.02
UPF1-204ENST00000596842 HOXD11P31277 338 aaPredicted RBP15.16■□□□□ 0.02
UPF1-204ENST00000596842 ALDH3B2P48448 385 aa15.16■□□□□ 0.02
UPF1-204ENST00000596842 LSM3P62310 102 aaKnown RBP15.16■□□□□ 0.02
UPF1-204ENST00000596842 PTPRNQ16849 979 aa15.16■□□□□ 0.02
UPF1-204ENST00000596842 TAS2R42Q7RTR8 314 aa15.16■□□□□ 0.02
UPF1-204ENST00000596842 SCD5Q86SK9 330 aa15.16■□□□□ 0.02
UPF1-204ENST00000596842 ATAD1Q8NBU5 361 aa15.16■□□□□ 0.02
UPF1-204ENST00000596842 MUS81Q96NY9 551 aa15.16■□□□□ 0.02
UPF1-204ENST00000596842 SMPD3Q9NY59 655 aaPredicted RBP15.16■□□□□ 0.02
UPF1-204ENST00000596842 FLRT1Q9NZU1 646 aa15.16■□□□□ 0.02
UPF1-204ENST00000596842 SLC27A5Q9Y2P5 690 aa15.16■□□□□ 0.02
UPF1-204ENST00000596842 HTR3EA5X5Y0 456 aa15.16■□□□□ 0.02
UPF1-204ENST00000596842 OR4F21O95013 312 aa15.16■□□□□ 0.02
UPF1-204ENST00000596842 BMP2P12643 396 aa15.16■□□□□ 0.02
UPF1-204ENST00000596842 IL7RP16871 459 aa15.16■□□□□ 0.02
UPF1-204ENST00000596842 C21orf59P57076 290 aa15.16■□□□□ 0.02
UPF1-204ENST00000596842 ZBED5Q49AG3 693 aa15.16■□□□□ 0.02
UPF1-204ENST00000596842 TBPL2Q6SJ96 375 aa15.16■□□□□ 0.02
UPF1-204ENST00000596842 GPR180Q86V85 440 aa15.16■□□□□ 0.02
UPF1-204ENST00000596842 ADGRG5Q8IZF4 528 aa15.16■□□□□ 0.02
UPF1-204ENST00000596842 ANKFN1Q8N957 763 aa15.16■□□□□ 0.02
UPF1-204ENST00000596842 ROPN1LQ96C74 230 aa15.16■□□□□ 0.02
UPF1-204ENST00000596842 HOPXQ9BPY8 73 aaPredicted RBP15.16■□□□□ 0.02
UPF1-204ENST00000596842 PLGRKTQ9HBL7 147 aa15.16■□□□□ 0.02
UPF1-204ENST00000596842 SLC12A8A0AV02 714 aa15.16■□□□□ 0.02
UPF1-204ENST00000596842 MBLAC1A4D2B0 266 aaPredicted RBP15.16■□□□□ 0.02
UPF1-204ENST00000596842 ZNF37AP17032 561 aaPredicted RBP15.16■□□□□ 0.02
UPF1-204ENST00000596842 UGT1A1P22309 533 aa15.16■□□□□ 0.02
UPF1-204ENST00000596842 UGT1A4P22310 534 aa15.16■□□□□ 0.02
UPF1-204ENST00000596842 UGT1A3P35503 534 aa15.16■□□□□ 0.02
UPF1-204ENST00000596842 UGT1A5P35504 534 aa15.16■□□□□ 0.02
UPF1-204ENST00000596842 CSRP3P50461 194 aa15.16■□□□□ 0.02
UPF1-204ENST00000596842 ARPC4P59998 168 aa15.16■□□□□ 0.02
UPF1-204ENST00000596842 ZRANB3Q5FWF4 1079 aa15.16■□□□□ 0.02
UPF1-204ENST00000596842 MILR1Q7Z6M3 343 aa15.16■□□□□ 0.02
UPF1-204ENST00000596842 ZC3H7AQ8IWR0 971 aaKnown RBP15.16■□□□□ 0.02
UPF1-204ENST00000596842 HS3ST5Q8IZT8 346 aa15.16■□□□□ 0.02
UPF1-204ENST00000596842 TNIP2Q8NFZ5 429 aa15.16■□□□□ 0.02
UPF1-204ENST00000596842 OR4K2Q8NGD2 314 aa15.16■□□□□ 0.02
UPF1-204ENST00000596842 OR4L1Q8NH43 312 aa15.16■□□□□ 0.02
UPF1-204ENST00000596842 IGSF8Q969P0 613 aa15.16■□□□□ 0.02
UPF1-204ENST00000596842 NCLNQ969V3 563 aa15.16■□□□□ 0.02
UPF1-204ENST00000596842 THUMPD3Q9BV44 507 aaKnown RBP15.16■□□□□ 0.02
UPF1-204ENST00000596842 NOL6Q9H6R4 1146 aaKnown RBP15.16■□□□□ 0.02
UPF1-204ENST00000596842 GMIPQ9P107 970 aa15.16■□□□□ 0.02
UPF1-204ENST00000596842 EIF2B4Q9UI10 523 aaKnown RBP15.16■□□□□ 0.02
UPF1-204ENST00000596842 SQORQ9Y6N5 450 aa15.16■□□□□ 0.02
UPF1-204ENST00000596842 FXYD1O00168 92 aa15.15■□□□□ 0.02
UPF1-204ENST00000596842 GSTA4O15217 222 aa15.15■□□□□ 0.02
UPF1-204ENST00000596842 CYBBP04839 570 aa15.15■□□□□ 0.02
UPF1-204ENST00000596842 VARSP26640 1264 aaKnown RBP15.15■□□□□ 0.02
UPF1-204ENST00000596842 MLLT6P55198 1093 aaPredicted RBP15.15■□□□□ 0.02
UPF1-204ENST00000596842 OR4D2P58180 307 aa15.15■□□□□ 0.02
UPF1-204ENST00000596842 TTC9BQ8N6N2 239 aa15.15■□□□□ 0.02
UPF1-204ENST00000596842 TRPV3Q8NET8 790 aa15.15■□□□□ 0.02
UPF1-204ENST00000596842 FNDC8Q8TC99 324 aa15.15■□□□□ 0.02
UPF1-204ENST00000596842 HM13Q8TCT9 377 aa15.15■□□□□ 0.02
UPF1-204ENST00000596842 PTCD2Q8WV60 388 aaKnown RBP15.15■□□□□ 0.02
UPF1-204ENST00000596842 SEPT8Q92599 483 aa15.15■□□□□ 0.02
UPF1-204ENST00000596842 IMP4Q96G21 291 aaKnown RBP15.15■□□□□ 0.02
UPF1-204ENST00000596842 NSMCE2Q96MF7 247 aa15.15■□□□□ 0.02
UPF1-204ENST00000596842 VPS51Q9UID3 782 aa15.15■□□□□ 0.02
UPF1-204ENST00000596842 SBF1O95248 1867 aa15.15■□□□□ 0.02
UPF1-204ENST00000596842 MYADML2A6NDP7 307 aa15.15■□□□□ 0.02
UPF1-204ENST00000596842 E5RI56 91 aa15.15■□□□□ 0.02
UPF1-204ENST00000596842 H3BMQ9 156 aa15.15■□□□□ 0.02
UPF1-204ENST00000596842 NIPSNAP2O75323 286 aa15.15■□□□□ 0.02
UPF1-204ENST00000596842 UPP1Q16831 310 aa15.15■□□□□ 0.02
UPF1-204ENST00000596842 C18orf21Q32NC0 220 aaPredicted RBP15.15■□□□□ 0.02
UPF1-204ENST00000596842 GLYATQ6IB77 296 aa15.15■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms