RNA–Protein interactions for RNA: ENST00000596332.1

LIG1-210, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 584 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-210ENST00000596332 SAP25Q8TEE9 199 aa10.48□□□□□ -0.73
LIG1-210ENST00000596332 HIC2Q96JB3 615 aa10.48□□□□□ -0.73
LIG1-210ENST00000596332 ELF4Q99607 663 aaPredicted RBP10.48□□□□□ -0.73
LIG1-210ENST00000596332 EBNA1BP2Q99848 306 aaKnown RBP10.48□□□□□ -0.73
LIG1-210ENST00000596332 ZSCAN5AQ9BUG6 496 aa10.48□□□□□ -0.73
LIG1-210ENST00000596332 WDR26Q9H7D7 661 aa10.48□□□□□ -0.73
LIG1-210ENST00000596332 EPB41L5Q9HCM4 733 aa10.48□□□□□ -0.73
LIG1-210ENST00000596332 RAD18Q9NS91 495 aa10.48□□□□□ -0.73
LIG1-210ENST00000596332 DNAAF2Q9NVR5 837 aaKnown RBP10.48□□□□□ -0.73
LIG1-210ENST00000596332 UCKL1Q9NWZ5 548 aa10.48□□□□□ -0.73
LIG1-210ENST00000596332 ATXN10Q9UBB4 475 aa10.48□□□□□ -0.73
LIG1-210ENST00000596332 NCDNQ9UBB6 729 aa10.48□□□□□ -0.73
LIG1-210ENST00000596332 GULP1Q9UBP9 304 aa10.48□□□□□ -0.73
LIG1-210ENST00000596332 PLEKHM1Q9Y4G2 1056 aa10.48□□□□□ -0.73
LIG1-210ENST00000596332 LRP4O75096 1905 aa10.47□□□□□ -0.73
LIG1-210ENST00000596332 MAGEB16A2A368 324 aa10.47□□□□□ -0.73
LIG1-210ENST00000596332 SMAPO00193 183 aa10.47□□□□□ -0.73
LIG1-210ENST00000596332 AP3B1O00203 1094 aa10.47□□□□□ -0.73
LIG1-210ENST00000596332 TNFRSF10CO14798 259 aa10.47□□□□□ -0.73
LIG1-210ENST00000596332 MTX2O75431 263 aa10.47□□□□□ -0.73
LIG1-210ENST00000596332 PRAMEF1O95521 474 aa10.47□□□□□ -0.73
LIG1-210ENST00000596332 GOT2P00505 430 aaKnown RBP10.47□□□□□ -0.73
LIG1-210ENST00000596332 CD59P13987 128 aa10.47□□□□□ -0.73
LIG1-210ENST00000596332 NME1P15531 152 aaKnown RBP10.47□□□□□ -0.73
LIG1-210ENST00000596332 ZNF8P17098 575 aaPredicted RBP10.47□□□□□ -0.73
LIG1-210ENST00000596332 MC4RP32245 332 aa10.47□□□□□ -0.73
LIG1-210ENST00000596332 PLA2G5P39877 138 aa10.47□□□□□ -0.73
LIG1-210ENST00000596332 ELK3P41970 407 aa10.47□□□□□ -0.73
LIG1-210ENST00000596332 CARSP49589 748 aaKnown RBP10.47□□□□□ -0.73
LIG1-210ENST00000596332 PLTPP55058 493 aa10.47□□□□□ -0.73
LIG1-210ENST00000596332 PDE1BQ01064 536 aa10.47□□□□□ -0.73
LIG1-210ENST00000596332 SEPT6Q14141 434 aa10.47□□□□□ -0.73
LIG1-210ENST00000596332 TEAD4Q15561 434 aa10.47□□□□□ -0.73
LIG1-210ENST00000596332 SKIDA1Q1XH10 827 aa10.47□□□□□ -0.73
LIG1-210ENST00000596332 PYCR3Q53H96 274 aa10.47□□□□□ -0.73
LIG1-210ENST00000596332 HP1BP3Q5SSJ5 553 aaPredicted RBP10.47□□□□□ -0.73
LIG1-210ENST00000596332 GPRC6AQ5T6X5 926 aa10.47□□□□□ -0.73
LIG1-210ENST00000596332 ZDHHC20Q5W0Z9 365 aa10.47□□□□□ -0.73
LIG1-210ENST00000596332 STEAP4Q687X5 459 aa10.47□□□□□ -0.73
LIG1-210ENST00000596332 ENPP7Q6UWV6 458 aa10.47□□□□□ -0.73
LIG1-210ENST00000596332 RABEPKQ7Z6M1 372 aa10.47□□□□□ -0.73
LIG1-210ENST00000596332 MINDY1Q8N5J2 469 aa10.47□□□□□ -0.73
LIG1-210ENST00000596332 RASGEF1AQ8N9B8 481 aa10.47□□□□□ -0.73
LIG1-210ENST00000596332 DDHD1Q8NEL9 900 aa10.47□□□□□ -0.73
LIG1-210ENST00000596332 SPDYE1Q8NFV5 336 aaPredicted RBP10.47□□□□□ -0.73
LIG1-210ENST00000596332 OR56A4Q8NGH8 313 aa10.47□□□□□ -0.73
LIG1-210ENST00000596332 CCL4L1Q8NHW4 92 aa10.47□□□□□ -0.73
LIG1-210ENST00000596332 PDXPQ96GD0 296 aa10.47□□□□□ -0.73
LIG1-210ENST00000596332 WDR92Q96MX6 357 aa10.47□□□□□ -0.73
LIG1-210ENST00000596332 BOCQ9BWV1 1114 aa10.47□□□□□ -0.73
LIG1-210ENST00000596332 NUSAP1Q9BXS6 441 aaKnown RBP10.47□□□□□ -0.73
LIG1-210ENST00000596332 ZDHHC5Q9C0B5 715 aa10.47□□□□□ -0.73
LIG1-210ENST00000596332 GAREM1Q9H706 876 aa10.47□□□□□ -0.73
LIG1-210ENST00000596332 ASB8Q9H765 288 aa10.47□□□□□ -0.73
LIG1-210ENST00000596332 ANKZF1Q9H8Y5 726 aa10.47□□□□□ -0.73
LIG1-210ENST00000596332 TRIM39Q9HCM9 518 aa10.47□□□□□ -0.73
LIG1-210ENST00000596332 RRAGDQ9NQL2 400 aaPredicted RBP10.47□□□□□ -0.73
LIG1-210ENST00000596332 TM7SF3Q9NS93 570 aa10.47□□□□□ -0.73
LIG1-210ENST00000596332 IL1RAPL1Q9NZN1 696 aa10.47□□□□□ -0.73
LIG1-210ENST00000596332 SLC23A2Q9UGH3 650 aa10.47□□□□□ -0.73
LIG1-210ENST00000596332 APPL1Q9UKG1 709 aa10.47□□□□□ -0.73
LIG1-210ENST00000596332 PKP3Q9Y446 797 aa10.47□□□□□ -0.73
LIG1-210ENST00000596332 DGKBQ9Y6T7 804 aa10.47□□□□□ -0.73
LIG1-210ENST00000596332 FAM169AQ9Y6X4 670 aa10.47□□□□□ -0.73
LIG1-210ENST00000596332 TMEM131Q92545 1883 aa10.47□□□□□ -0.73
LIG1-210ENST00000596332 FAM186AA6NE01 2351 aa10.46□□□□□ -0.73
LIG1-210ENST00000596332 PRSS38A1L453 326 aa10.46□□□□□ -0.73
LIG1-210ENST00000596332 SCAMP1O15126 338 aa10.46□□□□□ -0.73
LIG1-210ENST00000596332 NUAK1O60285 661 aa10.46□□□□□ -0.73
LIG1-210ENST00000596332 PIAS2O75928 621 aa10.46□□□□□ -0.73
LIG1-210ENST00000596332 USP1O94782 785 aa10.46□□□□□ -0.73
LIG1-210ENST00000596332 VAPBO95292 243 aa10.46□□□□□ -0.73
LIG1-210ENST00000596332 PYGLP06737 847 aa10.46□□□□□ -0.73
LIG1-210ENST00000596332 IVLP07476 585 aa10.46□□□□□ -0.73
LIG1-210ENST00000596332 F7P08709 466 aaPredicted RBP10.46□□□□□ -0.73
LIG1-210ENST00000596332 MYBL2P10244 700 aa10.46□□□□□ -0.73
LIG1-210ENST00000596332 HADHAP40939 763 aa10.46□□□□□ -0.73
LIG1-210ENST00000596332 TNNT3P45378 269 aaPredicted RBP10.46□□□□□ -0.73
LIG1-210ENST00000596332 HK3P52790 923 aa10.46□□□□□ -0.73
LIG1-210ENST00000596332 CTSCP53634 463 aa10.46□□□□□ -0.73
LIG1-210ENST00000596332 C21orf59P57076 290 aa10.46□□□□□ -0.73
LIG1-210ENST00000596332 GPX6P59796 221 aa10.46□□□□□ -0.73
LIG1-210ENST00000596332 SRP54P61011 504 aaKnown RBP10.46□□□□□ -0.73
LIG1-210ENST00000596332 SARNPP82979 210 aaKnown RBP10.46□□□□□ -0.73
LIG1-210ENST00000596332 TMEM115Q12893 351 aaPredicted RBP10.46□□□□□ -0.73
LIG1-210ENST00000596332 DBN1Q16643 649 aa10.46□□□□□ -0.73
LIG1-210ENST00000596332 BBS9Q3SYG4 887 aa10.46□□□□□ -0.73
LIG1-210ENST00000596332 ZNF789Q5FWF6 425 aa10.46□□□□□ -0.73
LIG1-210ENST00000596332 KIAA0930Q6ICG6 404 aaPredicted RBP10.46□□□□□ -0.73
LIG1-210ENST00000596332 TRMT10BQ6PF06 316 aaKnown RBP10.46□□□□□ -0.73
LIG1-210ENST00000596332 UNC5AQ6ZN44 842 aa10.46□□□□□ -0.73
LIG1-210ENST00000596332 CENPUQ71F23 418 aa10.46□□□□□ -0.73
LIG1-210ENST00000596332 NLRP9Q7RTR0 991 aa10.46□□□□□ -0.73
LIG1-210ENST00000596332 SNX20Q7Z614 316 aa10.46□□□□□ -0.73
LIG1-210ENST00000596332 LDB1Q86U70 411 aaPredicted RBP10.46□□□□□ -0.73
LIG1-210ENST00000596332 ALYREFQ86V81 257 aaKnown RBP10.46□□□□□ -0.73
LIG1-210ENST00000596332 PARGQ86W56 976 aa10.46□□□□□ -0.73
LIG1-210ENST00000596332 SERPINA9Q86WD7 417 aa10.46□□□□□ -0.73
LIG1-210ENST00000596332 SPNS2Q8IVW8 549 aa10.46□□□□□ -0.73
LIG1-210ENST00000596332 SFTPA2Q8IWL1 248 aa10.46□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms