RNA–Protein interactions for RNA: ENST00000594243.1

UPF1-202, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 683 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-202ENST00000594243 GRK7Q8WTQ7 553 aa14.88□□□□□ -0.03
UPF1-202ENST00000594243 PTCD2Q8WV60 388 aaKnown RBP14.88□□□□□ -0.03
UPF1-202ENST00000594243 TTC25Q96NG3 672 aa14.88□□□□□ -0.03
UPF1-202ENST00000594243 EIF2B3Q9NR50 452 aaKnown RBP14.88□□□□□ -0.03
UPF1-202ENST00000594243 ATXN10Q9UBB4 475 aa14.88□□□□□ -0.03
UPF1-202ENST00000594243 GULP1Q9UBP9 304 aa14.88□□□□□ -0.03
UPF1-202ENST00000594243 ANGPTL2Q9UKU9 493 aa14.88□□□□□ -0.03
UPF1-202ENST00000594243 GRID2O43424 1007 aa14.87□□□□□ -0.03
UPF1-202ENST00000594243 UGT1A9O60656 530 aa14.87□□□□□ -0.03
UPF1-202ENST00000594243 SRP72O76094 671 aaKnown RBP14.87□□□□□ -0.03
UPF1-202ENST00000594243 CDK14O94921 469 aa14.87□□□□□ -0.03
UPF1-202ENST00000594243 KRT14P02533 472 aa14.87□□□□□ -0.03
UPF1-202ENST00000594243 ZNF8P17098 575 aaPredicted RBP14.87□□□□□ -0.03
UPF1-202ENST00000594243 UGT1A6P19224 532 aa14.87□□□□□ -0.03
UPF1-202ENST00000594243 UGT1A1P22309 533 aa14.87□□□□□ -0.03
UPF1-202ENST00000594243 UGT1A4P22310 534 aa14.87□□□□□ -0.03
UPF1-202ENST00000594243 UGT1A3P35503 534 aa14.87□□□□□ -0.03
UPF1-202ENST00000594243 UGT1A5P35504 534 aa14.87□□□□□ -0.03
UPF1-202ENST00000594243 FNTAP49354 379 aa14.87□□□□□ -0.03
UPF1-202ENST00000594243 SHC2P98077 582 aa14.87□□□□□ -0.03
UPF1-202ENST00000594243 CDK16Q00536 496 aa14.87□□□□□ -0.03
UPF1-202ENST00000594243 TMEM115Q12893 351 aaPredicted RBP14.87□□□□□ -0.03
UPF1-202ENST00000594243 GTF2H3Q13889 308 aa14.87□□□□□ -0.03
UPF1-202ENST00000594243 POU6F1Q14863 301 aa14.87□□□□□ -0.03
UPF1-202ENST00000594243 LDLRAP1Q5SW96 308 aa14.87□□□□□ -0.03
UPF1-202ENST00000594243 TTC27Q6P3X3 843 aa14.87□□□□□ -0.03
UPF1-202ENST00000594243 CHST15Q7LFX5 561 aaPredicted RBP14.87□□□□□ -0.03
UPF1-202ENST00000594243 ADGRG6Q86SQ4 1221 aa14.87□□□□□ -0.03
UPF1-202ENST00000594243 NRROSQ86YC3 692 aa14.87□□□□□ -0.03
UPF1-202ENST00000594243 SLC35F3Q8IY50 421 aa14.87□□□□□ -0.03
UPF1-202ENST00000594243 GALNT15Q8N3T1 639 aa14.87□□□□□ -0.03
UPF1-202ENST00000594243 OR13C4Q8NGS5 318 aa14.87□□□□□ -0.03
UPF1-202ENST00000594243 STYXQ8WUJ0 223 aa14.87□□□□□ -0.03
UPF1-202ENST00000594243 NAT6Q93015 286 aa14.87□□□□□ -0.03
UPF1-202ENST00000594243 OR2AG1Q9H205 316 aa14.87□□□□□ -0.03
UPF1-202ENST00000594243 ASB8Q9H765 288 aa14.87□□□□□ -0.03
UPF1-202ENST00000594243 UGT1A7Q9HAW7 530 aa14.87□□□□□ -0.03
UPF1-202ENST00000594243 UGT1A10Q9HAW8 530 aa14.87□□□□□ -0.03
UPF1-202ENST00000594243 UGT1A8Q9HAW9 530 aa14.87□□□□□ -0.03
UPF1-202ENST00000594243 CASS4Q9NQ75 786 aa14.87□□□□□ -0.03
UPF1-202ENST00000594243 SMARCAL1Q9NZC9 954 aa14.87□□□□□ -0.03
UPF1-202ENST00000594243 SIRPGQ9P1W8 387 aa14.87□□□□□ -0.03
UPF1-202ENST00000594243 RNF14Q9UBS8 474 aa14.87□□□□□ -0.03
UPF1-202ENST00000594243 PADI4Q9UM07 663 aa14.87□□□□□ -0.03
UPF1-202ENST00000594243 KCTD3Q9Y597 815 aa14.87□□□□□ -0.03
UPF1-202ENST00000594243 CHD8Q9HCK8 2581 aa14.87□□□□□ -0.03
UPF1-202ENST00000594243 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP14.86□□□□□ -0.03
UPF1-202ENST00000594243 LY6G6EA0A0G2JKS1 128 aa14.86□□□□□ -0.03
UPF1-202ENST00000594243 CPED1A4D0V7 1026 aa14.86□□□□□ -0.03
UPF1-202ENST00000594243 HYAL3O43820 417 aaPredicted RBP14.86□□□□□ -0.03
UPF1-202ENST00000594243 PRAMEF1O95521 474 aa14.86□□□□□ -0.03
UPF1-202ENST00000594243 MYF5P13349 255 aa14.86□□□□□ -0.03
UPF1-202ENST00000594243 ADRA1DP25100 572 aa14.86□□□□□ -0.03
UPF1-202ENST00000594243 AK4P27144 223 aaPredicted RBP14.86□□□□□ -0.03
UPF1-202ENST00000594243 PAFAH1B1P43034 410 aa14.86□□□□□ -0.03
UPF1-202ENST00000594243 ZNF140P52738 457 aaPredicted RBP14.86□□□□□ -0.03
UPF1-202ENST00000594243 SARNPP82979 210 aaKnown RBP14.86□□□□□ -0.03
UPF1-202ENST00000594243 TMPRSS15P98073 1019 aa14.86□□□□□ -0.03
UPF1-202ENST00000594243 SEPT6Q14141 434 aa14.86□□□□□ -0.03
UPF1-202ENST00000594243 TRIP13Q15645 432 aaPredicted RBP14.86□□□□□ -0.03
UPF1-202ENST00000594243 SKIDA1Q1XH10 827 aa14.86□□□□□ -0.03
UPF1-202ENST00000594243 ZNF648Q5T619 568 aaPredicted RBP14.86□□□□□ -0.03
UPF1-202ENST00000594243 SLC30A9Q6PML9 568 aa14.86□□□□□ -0.03
UPF1-202ENST00000594243 DHRS13Q6UX07 377 aa14.86□□□□□ -0.03
UPF1-202ENST00000594243 GPR156Q8NFN8 814 aa14.86□□□□□ -0.03
UPF1-202ENST00000594243 IFI44Q8TCB0 444 aa14.86□□□□□ -0.03
UPF1-202ENST00000594243 RANBP9Q96S59 729 aa14.86□□□□□ -0.03
UPF1-202ENST00000594243 SCNM1Q9BWG6 230 aa14.86□□□□□ -0.03
UPF1-202ENST00000594243 ZCCHC2Q9C0B9 1178 aaKnown RBP14.86□□□□□ -0.03
UPF1-202ENST00000594243 ABCG4Q9H172 646 aa14.86□□□□□ -0.03
UPF1-202ENST00000594243 ARFGAP3Q9NP61 516 aa14.86□□□□□ -0.03
UPF1-202ENST00000594243 SPATS2LQ9NUQ6 558 aaKnown RBP14.86□□□□□ -0.03
UPF1-202ENST00000594243 NLE1Q9NVX2 485 aaPredicted RBP14.86□□□□□ -0.03
UPF1-202ENST00000594243 SMOXQ9NWM0 555 aa14.86□□□□□ -0.03
UPF1-202ENST00000594243 PIH1D1Q9NWS0 290 aaKnown RBP14.86□□□□□ -0.03
UPF1-202ENST00000594243 TAAR2Q9P1P5 351 aa14.86□□□□□ -0.03
UPF1-202ENST00000594243 FKBPLQ9UIM3 349 aa14.86□□□□□ -0.03
UPF1-202ENST00000594243 TMPRSS11EQ9UL52 423 aa14.86□□□□□ -0.03
UPF1-202ENST00000594243 WASF3Q9UPY6 502 aa14.86□□□□□ -0.03
UPF1-202ENST00000594243 SLC30A1Q9Y6M5 507 aa14.86□□□□□ -0.03
UPF1-202ENST00000594243 U3KQA8 63 aa14.86□□□□□ -0.03
UPF1-202ENST00000594243 LRP4O75096 1905 aa14.86□□□□□ -0.03
UPF1-202ENST00000594243 TDRD6O60522 2096 aaKnown RBP14.85□□□□□ -0.03
UPF1-202ENST00000594243 HEATR9A2RTY3 570 aa14.85□□□□□ -0.03
UPF1-202ENST00000594243 FAM221BA6H8Z2 402 aa14.85□□□□□ -0.03
UPF1-202ENST00000594243 MROH6A6NGR9 719 aa14.85□□□□□ -0.03
UPF1-202ENST00000594243 H7C0S8 307 aa14.85□□□□□ -0.03
UPF1-202ENST00000594243 GAPDHSO14556 408 aaPredicted RBP14.85□□□□□ -0.03
UPF1-202ENST00000594243 CHUKO15111 745 aa14.85□□□□□ -0.03
UPF1-202ENST00000594243 KMOO15229 486 aa14.85□□□□□ -0.03
UPF1-202ENST00000594243 TPSB2P20231 275 aa14.85□□□□□ -0.03
UPF1-202ENST00000594243 ACTR1BP42025 376 aa14.85□□□□□ -0.03
UPF1-202ENST00000594243 GRIA1P42261 906 aa14.85□□□□□ -0.03
UPF1-202ENST00000594243 NPY2RP49146 381 aa14.85□□□□□ -0.03
UPF1-202ENST00000594243 ACTR1AP61163 376 aa14.85□□□□□ -0.03
UPF1-202ENST00000594243 XIAPP98170 497 aa14.85□□□□□ -0.03
UPF1-202ENST00000594243 GPS1Q13098 491 aa14.85□□□□□ -0.03
UPF1-202ENST00000594243 NFATC2Q13469 925 aa14.85□□□□□ -0.03
UPF1-202ENST00000594243 TPSAB1Q15661 275 aa14.85□□□□□ -0.03
UPF1-202ENST00000594243 SMAD1Q15797 465 aaKnown RBP14.85□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms