RNA–Protein interactions for RNA: ENST00000593099.5

LIG3-216, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 4,664 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-216ENST00000593099 SELENONQ9NZV5 590 aa9.78□□□□□ -0.84
LIG3-216ENST00000593099 B4GALT6Q9UBX8 382 aa9.78□□□□□ -0.84
LIG3-216ENST00000593099 KLQ9UEF7 1012 aa9.78□□□□□ -0.84
LIG3-216ENST00000593099 SUSD2Q9UGT4 822 aa9.78□□□□□ -0.84
LIG3-216ENST00000593099 MFHAS1Q9Y4C4 1052 aa9.78□□□□□ -0.84
LIG3-216ENST00000593099 CEP290O15078 2479 aa9.78□□□□□ -0.84
LIG3-216ENST00000593099 HNRNPCL2B2RXH8 293 aa9.78□□□□□ -0.84
LIG3-216ENST00000593099 HNRNPCL1O60812 293 aaKnown RBP9.78□□□□□ -0.84
LIG3-216ENST00000593099 POLD2P49005 469 aa9.78□□□□□ -0.84
LIG3-216ENST00000593099 ALDH9A1P49189 494 aa9.78□□□□□ -0.84
LIG3-216ENST00000593099 RPIAP49247 311 aa9.78□□□□□ -0.84
LIG3-216ENST00000593099 LRRC74AQ0VAA2 488 aa9.78□□□□□ -0.84
LIG3-216ENST00000593099 CDC16Q13042 620 aa9.78□□□□□ -0.84
LIG3-216ENST00000593099 FAM78AQ5JUQ0 283 aa9.78□□□□□ -0.84
LIG3-216ENST00000593099 SNAP47Q5SQN1 464 aa9.78□□□□□ -0.84
LIG3-216ENST00000593099 MPP7Q5T2T1 576 aa9.78□□□□□ -0.84
LIG3-216ENST00000593099 CAPN13Q6MZZ7 669 aaPredicted RBP9.78□□□□□ -0.84
LIG3-216ENST00000593099 TXNDC11Q6PKC3 985 aa9.78□□□□□ -0.84
LIG3-216ENST00000593099 C17orf64Q86WR6 236 aa9.78□□□□□ -0.84
LIG3-216ENST00000593099 SELENOMQ8WWX9 145 aa9.78□□□□□ -0.84
LIG3-216ENST00000593099 SLC38A3Q99624 504 aa9.78□□□□□ -0.84
LIG3-216ENST00000593099 TRIT1Q9H3H1 467 aaKnown RBP9.78□□□□□ -0.84
LIG3-216ENST00000593099 FANCEQ9HB96 536 aa9.78□□□□□ -0.84
LIG3-216ENST00000593099 STON1Q9Y6Q2 735 aa9.78□□□□□ -0.84
LIG3-216ENST00000593099 PTGIRP43119 386 aa9.78□□□□□ -0.84
LIG3-216ENST00000593099 STX5Q13190 355 aa9.78□□□□□ -0.84
LIG3-216ENST00000593099 ARHGAP36Q6ZRI8 547 aa9.78□□□□□ -0.84
LIG3-216ENST00000593099 TEX9Q8N6V9 391 aa9.78□□□□□ -0.84
LIG3-216ENST00000593099 B4GALNT2Q8NHY0 566 aa9.78□□□□□ -0.84
LIG3-216ENST00000593099 SORCS1Q8WY21 1168 aa9.78□□□□□ -0.84
LIG3-216ENST00000593099 KLHDC7BQ96G42 594 aa9.78□□□□□ -0.84
LIG3-216ENST00000593099 GTPBP2Q9BX10 602 aaKnown RBP9.78□□□□□ -0.84
LIG3-216ENST00000593099 ACE2Q9BYF1 805 aaPredicted RBP9.78□□□□□ -0.84
LIG3-216ENST00000593099 RUBCNLQ9H714 662 aa9.78□□□□□ -0.84
LIG3-216ENST00000593099 SEMA4BQ9NPR2 832 aaPredicted RBP9.78□□□□□ -0.84
LIG3-216ENST00000593099 SNX6Q9UNH7 406 aa9.78□□□□□ -0.84
LIG3-216ENST00000593099 ARL5AQ9Y689 179 aa9.78□□□□□ -0.84
LIG3-216ENST00000593099 CCDC162PA2VCL2 907 aa9.77□□□□□ -0.84
LIG3-216ENST00000593099 PCP4L1A6NKN8 68 aa9.77□□□□□ -0.84
LIG3-216ENST00000593099 DCLK1O15075 740 aa9.77□□□□□ -0.84
LIG3-216ENST00000593099 PIAS1O75925 651 aa9.77□□□□□ -0.84
LIG3-216ENST00000593099 MLYCDO95822 493 aa9.77□□□□□ -0.84
LIG3-216ENST00000593099 OXTRP30559 389 aa9.77□□□□□ -0.84
LIG3-216ENST00000593099 CD70P32970 193 aa9.77□□□□□ -0.84
LIG3-216ENST00000593099 GNPDA1P46926 289 aa9.77□□□□□ -0.84
LIG3-216ENST00000593099 NAGLUP54802 743 aa9.77□□□□□ -0.84
LIG3-216ENST00000593099 TCAIMQ8N3R3 496 aa9.77□□□□□ -0.84
LIG3-216ENST00000593099 MREGQ8N565 214 aa9.77□□□□□ -0.84
LIG3-216ENST00000593099 OR13C4Q8NGS5 318 aa9.77□□□□□ -0.84
LIG3-216ENST00000593099 RBBP8Q99708 897 aa9.77□□□□□ -0.84
LIG3-216ENST00000593099 ACAT2Q9BWD1 397 aa9.77□□□□□ -0.84
LIG3-216ENST00000593099 THAP1Q9NVV9 213 aa9.77□□□□□ -0.84
LIG3-216ENST00000593099 ZDHHC3Q9NYG2 299 aa9.77□□□□□ -0.84
LIG3-216ENST00000593099 VTI1BQ9UEU0 232 aa9.77□□□□□ -0.84
LIG3-216ENST00000593099 SMCHD1A6NHR9 2005 aa9.77□□□□□ -0.85
LIG3-216ENST00000593099 SDK1Q7Z5N4 2213 aa9.77□□□□□ -0.85
LIG3-216ENST00000593099 SYNDIG1LA6NDD5 238 aa9.77□□□□□ -0.85
LIG3-216ENST00000593099 SEC22BO75396 215 aa9.77□□□□□ -0.85
LIG3-216ENST00000593099 CLDN7O95471 211 aa9.77□□□□□ -0.85
LIG3-216ENST00000593099 TNFP01375 233 aa9.77□□□□□ -0.85
LIG3-216ENST00000593099 C2P06681 752 aa9.77□□□□□ -0.85
LIG3-216ENST00000593099 SLC1A6P48664 564 aa9.77□□□□□ -0.85
LIG3-216ENST00000593099 RGS1Q08116 209 aa9.77□□□□□ -0.85
LIG3-216ENST00000593099 SF1Q15637 639 aaKnown RBP9.77□□□□□ -0.85
LIG3-216ENST00000593099 TEDDM1Q5T9Z0 273 aa9.77□□□□□ -0.85
LIG3-216ENST00000593099 MFSD6LQ8IWD5 586 aa9.77□□□□□ -0.85
LIG3-216ENST00000593099 LCN9Q8WX39 176 aa9.77□□□□□ -0.85
LIG3-216ENST00000593099 OTUB1Q96FW1 271 aaPredicted RBP9.77□□□□□ -0.85
LIG3-216ENST00000593099 CDKN2AIPNLQ96HQ2 116 aa9.77□□□□□ -0.85
LIG3-216ENST00000593099 MYRFLQ96LU7 910 aa9.77□□□□□ -0.85
LIG3-216ENST00000593099 INTS10Q9NVR2 710 aaKnown RBP9.77□□□□□ -0.85
LIG3-216ENST00000593099 A0A1W2PP55 124 aa9.77□□□□□ -0.85
LIG3-216ENST00000593099 FAM170BA6NMN3 283 aa9.77□□□□□ -0.85
LIG3-216ENST00000593099 SCAMP1O15126 338 aa9.77□□□□□ -0.85
LIG3-216ENST00000593099 RGS14O43566 566 aa9.77□□□□□ -0.85
LIG3-216ENST00000593099 TSPAN6O43657 245 aa9.77□□□□□ -0.85
LIG3-216ENST00000593099 UGT1A9O60656 530 aa9.77□□□□□ -0.85
LIG3-216ENST00000593099 MT-CO1P00395 513 aa9.77□□□□□ -0.85
LIG3-216ENST00000593099 F11P03951 625 aa9.77□□□□□ -0.85
LIG3-216ENST00000593099 NUDT17P0C025 328 aa9.77□□□□□ -0.85
LIG3-216ENST00000593099 UGT1A6P19224 532 aa9.77□□□□□ -0.85
LIG3-216ENST00000593099 UGT1A1P22309 533 aa9.77□□□□□ -0.85
LIG3-216ENST00000593099 UGT1A4P22310 534 aa9.77□□□□□ -0.85
LIG3-216ENST00000593099 UGT1A3P35503 534 aa9.77□□□□□ -0.85
LIG3-216ENST00000593099 UGT1A5P35504 534 aa9.77□□□□□ -0.85
LIG3-216ENST00000593099 ARPC4P59998 168 aa9.77□□□□□ -0.85
LIG3-216ENST00000593099 TDGQ13569 410 aa9.77□□□□□ -0.85
LIG3-216ENST00000593099 LRRC66Q68CR7 880 aa9.77□□□□□ -0.85
LIG3-216ENST00000593099 RALGPS2Q86X27 583 aaPredicted RBP9.77□□□□□ -0.85
LIG3-216ENST00000593099 APCDD1Q8J025 514 aa9.77□□□□□ -0.85
LIG3-216ENST00000593099 RAD51AP1Q96B01 352 aa9.77□□□□□ -0.85
LIG3-216ENST00000593099 OSBPL6Q9BZF3 934 aa9.77□□□□□ -0.85
LIG3-216ENST00000593099 Q9H521 79 aa9.77□□□□□ -0.85
LIG3-216ENST00000593099 UGT1A7Q9HAW7 530 aa9.77□□□□□ -0.85
LIG3-216ENST00000593099 UGT1A10Q9HAW8 530 aa9.77□□□□□ -0.85
LIG3-216ENST00000593099 UGT1A8Q9HAW9 530 aa9.77□□□□□ -0.85
LIG3-216ENST00000593099 NCDNQ9UBB6 729 aa9.77□□□□□ -0.85
LIG3-216ENST00000593099 XPR1Q9UBH6 696 aa9.77□□□□□ -0.85
LIG3-216ENST00000593099 PSME2Q9UL46 239 aa9.77□□□□□ -0.85
LIG3-216ENST00000593099 PNMA8BQ9ULN7 279 aaPredicted RBP9.77□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms