RNA–Protein interactions for RNA: ENST00000585740.5

LIG3-204, Transcript of DNA ligase 3, humanhuman

TSL 3

Gene LIG3, Length 887 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-204ENST00000585740 DOCK6Q96HP0 2047 aa11.19□□□□□ -0.62
LIG3-204ENST00000585740 NOTCH4Q99466 2003 aa11.19□□□□□ -0.62
LIG3-204ENST00000585740 C1orf232A0A0U1RR37 186 aa11.18□□□□□ -0.62
LIG3-204ENST00000585740 SUPT3HB4E1H0 165 aa11.18□□□□□ -0.62
LIG3-204ENST00000585740 UBXN8O00124 270 aa11.18□□□□□ -0.62
LIG3-204ENST00000585740 CLASP2O75122 1294 aaKnown RBP11.18□□□□□ -0.62
LIG3-204ENST00000585740 MOSPD3O75425 235 aa11.18□□□□□ -0.62
LIG3-204ENST00000585740 SUPT3HO75486 399 aa11.18□□□□□ -0.62
LIG3-204ENST00000585740 FGF4P08620 206 aa11.18□□□□□ -0.62
LIG3-204ENST00000585740 PRSS56P0CW18 603 aa11.18□□□□□ -0.62
LIG3-204ENST00000585740 HNRNPLP14866 589 aaKnown RBP eCLIP11.18□□□□□ -0.62
LIG3-204ENST00000585740 CHRM3P20309 590 aa11.18□□□□□ -0.62
LIG3-204ENST00000585740 EPHA3P29320 983 aa11.18□□□□□ -0.62
LIG3-204ENST00000585740 WEE1P30291 646 aa11.18□□□□□ -0.62
LIG3-204ENST00000585740 CPOXP36551 454 aa11.18□□□□□ -0.62
LIG3-204ENST00000585740 CCR2P41597 374 aa11.18□□□□□ -0.62
LIG3-204ENST00000585740 RGS4P49798 205 aa11.18□□□□□ -0.62
LIG3-204ENST00000585740 VASPP50552 380 aaPredicted RBP11.18□□□□□ -0.62
LIG3-204ENST00000585740 ATP4BP51164 291 aa11.18□□□□□ -0.62
LIG3-204ENST00000585740 CUL3Q13618 768 aa11.18□□□□□ -0.62
LIG3-204ENST00000585740 SQLEQ14534 574 aa11.18□□□□□ -0.62
LIG3-204ENST00000585740 OR4D1Q15615 310 aa11.18□□□□□ -0.62
LIG3-204ENST00000585740 ZNF77Q15935 545 aa11.18□□□□□ -0.62
LIG3-204ENST00000585740 PREPLQ4J6C6 727 aaPredicted RBP11.18□□□□□ -0.62
LIG3-204ENST00000585740 CTSL3PQ5NE16 218 aa11.18□□□□□ -0.62
LIG3-204ENST00000585740 SWT1Q5T5J6 900 aaKnown RBP11.18□□□□□ -0.62
LIG3-204ENST00000585740 WLSQ5T9L3 541 aa11.18□□□□□ -0.62
LIG3-204ENST00000585740 ANKS6Q68DC2 871 aa11.18□□□□□ -0.62
LIG3-204ENST00000585740 PTRHD1Q6GMV3 140 aaKnown RBP11.18□□□□□ -0.62
LIG3-204ENST00000585740 C16orf89Q6UX73 402 aa11.18□□□□□ -0.62
LIG3-204ENST00000585740 TPRG1Q6ZUI0 275 aa11.18□□□□□ -0.62
LIG3-204ENST00000585740 ULK2Q8IYT8 1036 aa11.18□□□□□ -0.62
LIG3-204ENST00000585740 ECHDC3Q96DC8 303 aa11.18□□□□□ -0.62
LIG3-204ENST00000585740 TCEAL4Q96EI5 215 aa11.18□□□□□ -0.62
LIG3-204ENST00000585740 UHRF1Q96T88 793 aaPredicted RBP11.18□□□□□ -0.62
LIG3-204ENST00000585740 BBS2Q9BXC9 721 aa11.18□□□□□ -0.62
LIG3-204ENST00000585740 C1QTNF3Q9BXJ4 246 aa11.18□□□□□ -0.62
LIG3-204ENST00000585740 CLPBQ9H078 707 aa11.18□□□□□ -0.62
LIG3-204ENST00000585740 WDR55Q9H6Y2 383 aaPredicted RBP11.18□□□□□ -0.62
LIG3-204ENST00000585740 SPHK2Q9NRA0 654 aa11.18□□□□□ -0.62
LIG3-204ENST00000585740 HCFC1R1Q9NWW0 138 aa11.18□□□□□ -0.62
LIG3-204ENST00000585740 NUDT4Q9NZJ9 180 aa11.18□□□□□ -0.62
LIG3-204ENST00000585740 THEGQ9P2T0 379 aa11.18□□□□□ -0.62
LIG3-204ENST00000585740 HECAQ9UBI9 543 aaPredicted RBP11.18□□□□□ -0.62
LIG3-204ENST00000585740 CLEC4EQ9ULY5 219 aa11.18□□□□□ -0.62
LIG3-204ENST00000585740 PRPF19Q9UMS4 504 aaKnown RBP11.18□□□□□ -0.62
LIG3-204ENST00000585740 SLC8A2Q9UPR5 921 aa11.18□□□□□ -0.62
LIG3-204ENST00000585740 FAM50BQ9Y247 325 aa11.18□□□□□ -0.62
LIG3-204ENST00000585740 DHRS7Q9Y394 339 aa11.18□□□□□ -0.62
LIG3-204ENST00000585740 TRBV5-4A0A0C4DH59 114 aa11.17□□□□□ -0.62
LIG3-204ENST00000585740 GLYATL1P3A0A0U1RQE8 302 aa11.17□□□□□ -0.62
LIG3-204ENST00000585740 LINC01553A4QN01 128 aa11.17□□□□□ -0.62
LIG3-204ENST00000585740 WASH3PC4AMC7 463 aa11.17□□□□□ -0.62
LIG3-204ENST00000585740 KLK8O60259 260 aa11.17□□□□□ -0.62
LIG3-204ENST00000585740 CCNT2O60583 730 aaKnown RBP11.17□□□□□ -0.62
LIG3-204ENST00000585740 SNX2O60749 519 aa11.17□□□□□ -0.62
LIG3-204ENST00000585740 VPS4BO75351 444 aa11.17□□□□□ -0.62
LIG3-204ENST00000585740 GPC4O75487 556 aa11.17□□□□□ -0.62
LIG3-204ENST00000585740 ZNF821O75541 412 aaPredicted RBP11.17□□□□□ -0.62
LIG3-204ENST00000585740 PRAMEF1O95521 474 aa11.17□□□□□ -0.62
LIG3-204ENST00000585740 RPS17P08708 135 aaKnown RBP11.17□□□□□ -0.62
LIG3-204ENST00000585740 ALPIP09923 528 aa11.17□□□□□ -0.62
LIG3-204ENST00000585740 MTHFD2P13995 350 aa11.17□□□□□ -0.62
LIG3-204ENST00000585740 HLA-FP30511 346 aa11.17□□□□□ -0.62
LIG3-204ENST00000585740 HNF1BP35680 557 aa11.17□□□□□ -0.62
LIG3-204ENST00000585740 RECQLP46063 649 aaPredicted RBP11.17□□□□□ -0.62
LIG3-204ENST00000585740 KCNC1P48547 511 aa11.17□□□□□ -0.62
LIG3-204ENST00000585740 CDKN1CP49918 316 aaPredicted RBP11.17□□□□□ -0.62
LIG3-204ENST00000585740 CCNG1P51959 295 aa11.17□□□□□ -0.62
LIG3-204ENST00000585740 POLR2LP62875 67 aaKnown RBP11.17□□□□□ -0.62
LIG3-204ENST00000585740 ECT2LQ008S8 904 aa11.17□□□□□ -0.62
LIG3-204ENST00000585740 BTKQ06187 659 aa11.17□□□□□ -0.62
LIG3-204ENST00000585740 CYLC2Q14093 348 aaPredicted RBP11.17□□□□□ -0.62
LIG3-204ENST00000585740 CDKN3Q16667 212 aa11.17□□□□□ -0.62
LIG3-204ENST00000585740 FUT11Q495W5 492 aa11.17□□□□□ -0.62
LIG3-204ENST00000585740 SETMARQ53H47 684 aaPredicted RBP11.17□□□□□ -0.62
LIG3-204ENST00000585740 PRSS36Q5K4E3 855 aa11.17□□□□□ -0.62
LIG3-204ENST00000585740 DGKKQ5KSL6 1271 aa11.17□□□□□ -0.62
LIG3-204ENST00000585740 ICE2Q659A1 982 aa11.17□□□□□ -0.62
LIG3-204ENST00000585740 CHSY3Q70JA7 882 aa11.17□□□□□ -0.62
LIG3-204ENST00000585740 KIAA0907Q7Z7F0 614 aaPredicted RBP11.17□□□□□ -0.62
LIG3-204ENST00000585740 SERPINA9Q86WD7 417 aa11.17□□□□□ -0.62
LIG3-204ENST00000585740 TMEM25Q86YD3 366 aa11.17□□□□□ -0.62
LIG3-204ENST00000585740 AHI1Q8N157 1196 aa11.17□□□□□ -0.62
LIG3-204ENST00000585740 PHTF2Q8N3S3 785 aa11.17□□□□□ -0.62
LIG3-204ENST00000585740 CHCHD4Q8N4Q1 142 aa11.17□□□□□ -0.62
LIG3-204ENST00000585740 POU5F2Q8N7G0 328 aa11.17□□□□□ -0.62
LIG3-204ENST00000585740 PNPLA1Q8N8W4 532 aa11.17□□□□□ -0.62
LIG3-204ENST00000585740 CD200R1Q8TD46 325 aa11.17□□□□□ -0.62
LIG3-204ENST00000585740 WFIKKN2Q8TEU8 576 aa11.17□□□□□ -0.62
LIG3-204ENST00000585740 EXT2Q93063 718 aa11.17□□□□□ -0.62
LIG3-204ENST00000585740 ULK4Q96C45 1275 aa11.17□□□□□ -0.62
LIG3-204ENST00000585740 TIFAQ96CG3 184 aa11.17□□□□□ -0.62
LIG3-204ENST00000585740 SCRN2Q96FV2 425 aa11.17□□□□□ -0.62
LIG3-204ENST00000585740 SMIM14Q96QK8 99 aa11.17□□□□□ -0.62
LIG3-204ENST00000585740 SERPINI1Q99574 410 aa11.17□□□□□ -0.62
LIG3-204ENST00000585740 NUSAP1Q9BXS6 441 aaKnown RBP11.17□□□□□ -0.62
LIG3-204ENST00000585740 SHCBP1LQ9BZQ2 653 aa11.17□□□□□ -0.62
LIG3-204ENST00000585740 SMG9Q9H0W8 520 aaKnown RBP11.17□□□□□ -0.62
LIG3-204ENST00000585740 TNKS2Q9H2K2 1166 aa11.17□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms