RNA–Protein interactions for RNA: ENST00000576149.5

VPS53-220, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 2,444 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-220ENST00000576149 CLCN4P51793 760 aa10.01□□□□□ -0.81
VPS53-220ENST00000576149 CCNHP51946 323 aaPredicted RBP10.01□□□□□ -0.81
VPS53-220ENST00000576149 CTSL3PQ5NE16 218 aa10.01□□□□□ -0.81
VPS53-220ENST00000576149 KIAA1841Q6NSI8 718 aa10.01□□□□□ -0.81
VPS53-220ENST00000576149 NCEH1Q6PIU2 408 aa10.01□□□□□ -0.81
VPS53-220ENST00000576149 LINGO4Q6UY18 593 aa10.01□□□□□ -0.81
VPS53-220ENST00000576149 ZNF783Q6ZMS7 281 aa10.01□□□□□ -0.81
VPS53-220ENST00000576149 REM2Q8IYK8 340 aaPredicted RBP10.01□□□□□ -0.81
VPS53-220ENST00000576149 EFHBQ8N7U6 833 aa10.01□□□□□ -0.81
VPS53-220ENST00000576149 SLAIN1Q8ND83 568 aa10.01□□□□□ -0.81
VPS53-220ENST00000576149 TUBGCP3Q96CW5 907 aa10.01□□□□□ -0.81
VPS53-220ENST00000576149 DUS3LQ96G46 650 aaKnown RBP10.01□□□□□ -0.81
VPS53-220ENST00000576149 SCLYQ96I15 445 aa10.01□□□□□ -0.81
VPS53-220ENST00000576149 IGSF21Q96ID5 467 aa10.01□□□□□ -0.81
VPS53-220ENST00000576149 TSC22D3Q99576 134 aa10.01□□□□□ -0.81
VPS53-220ENST00000576149 GPATCH1Q9BRR8 931 aaKnown RBP10.01□□□□□ -0.81
VPS53-220ENST00000576149 Q9H521 79 aa10.01□□□□□ -0.81
VPS53-220ENST00000576149 SEMA4BQ9NPR2 832 aaPredicted RBP10.01□□□□□ -0.81
VPS53-220ENST00000576149 POLG2Q9UHN1 485 aa10.01□□□□□ -0.81
VPS53-220ENST00000576149 STOML2Q9UJZ1 356 aa10.01□□□□□ -0.81
VPS53-220ENST00000576149 AP4S1Q9Y587 144 aa10.01□□□□□ -0.81
VPS53-220ENST00000576149 hCG_2014768A0A024R1R8 64 aa10.01□□□□□ -0.81
VPS53-220ENST00000576149 TCRBV3S1A0A5B6 114 aa10.01□□□□□ -0.81
VPS53-220ENST00000576149 NPEPPSL1A6NEC2 478 aa10.01□□□□□ -0.81
VPS53-220ENST00000576149 BTN3A1O00481 513 aa10.01□□□□□ -0.81
VPS53-220ENST00000576149 NIPSNAP2O75323 286 aa10.01□□□□□ -0.81
VPS53-220ENST00000576149 VPS4BO75351 444 aa10.01□□□□□ -0.81
VPS53-220ENST00000576149 LINC00032P0C843 101 aa10.01□□□□□ -0.81
VPS53-220ENST00000576149 PEX19P40855 299 aa10.01□□□□□ -0.81
VPS53-220ENST00000576149 SLC7A2P52569 658 aa10.01□□□□□ -0.81
VPS53-220ENST00000576149 ADARP55265 1226 aaKnown RBP10.01□□□□□ -0.81
VPS53-220ENST00000576149 IRX1P78414 480 aaPredicted RBP10.01□□□□□ -0.81
VPS53-220ENST00000576149 PTPRRQ15256 657 aa10.01□□□□□ -0.81
VPS53-220ENST00000576149 C6orf10Q5SRN2 563 aa10.01□□□□□ -0.81
VPS53-220ENST00000576149 TXNDC11Q6PKC3 985 aa10.01□□□□□ -0.81
VPS53-220ENST00000576149 SIDT2Q8NBJ9 832 aaKnown RBP10.01□□□□□ -0.81
VPS53-220ENST00000576149 KCNJ9Q92806 393 aa10.01□□□□□ -0.81
VPS53-220ENST00000576149 TRMT2BQ96GJ1 504 aaKnown RBP10.01□□□□□ -0.81
VPS53-220ENST00000576149 CYP2S1Q96SQ9 504 aa10.01□□□□□ -0.81
VPS53-220ENST00000576149 SLC39A3Q9BRY0 314 aa10.01□□□□□ -0.81
VPS53-220ENST00000576149 BPIFA1Q9NP55 256 aa10.01□□□□□ -0.81
VPS53-220ENST00000576149 SDR39U1Q9NRG7 319 aaPredicted RBP10.01□□□□□ -0.81
VPS53-220ENST00000576149 CREBZFQ9NS37 354 aa10.01□□□□□ -0.81
VPS53-220ENST00000576149 MAP10Q9P2G4 905 aa10.01□□□□□ -0.81
VPS53-220ENST00000576149 LHX3Q9UBR4 397 aa10.01□□□□□ -0.81
VPS53-220ENST00000576149 TRMT6Q9UJA5 497 aaKnown RBP10.01□□□□□ -0.81
VPS53-220ENST00000576149 CNOT11Q9UKZ1 510 aaKnown RBP10.01□□□□□ -0.81
VPS53-220ENST00000576149 BTRCQ9Y297 605 aa10.01□□□□□ -0.81
VPS53-220ENST00000576149 NDUFAF1Q9Y375 327 aa10.01□□□□□ -0.81
VPS53-220ENST00000576149 C15orf38-AP3S2A0A0A6YYH1 394 aa10□□□□□ -0.81
VPS53-220ENST00000576149 NR5A2O00482 541 aa10□□□□□ -0.81
VPS53-220ENST00000576149 CXCL10P02778 98 aa10□□□□□ -0.81
VPS53-220ENST00000576149 FESP07332 822 aa10□□□□□ -0.81
VPS53-220ENST00000576149 PRR35P0CG20 571 aa10□□□□□ -0.81
VPS53-220ENST00000576149 HGFP14210 728 aa10□□□□□ -0.81
VPS53-220ENST00000576149 NME5P56597 212 aa10□□□□□ -0.81
VPS53-220ENST00000576149 PLD1Q13393 1074 aa10□□□□□ -0.81
VPS53-220ENST00000576149 VPS26BQ4G0F5 336 aa10□□□□□ -0.81
VPS53-220ENST00000576149 INO80DQ53TQ3 878 aaPredicted RBP10□□□□□ -0.81
VPS53-220ENST00000576149 ZRANB3Q5FWF4 1079 aa10□□□□□ -0.81
VPS53-220ENST00000576149 FBXO48Q5FWF7 155 aa10□□□□□ -0.81
VPS53-220ENST00000576149 AARS2Q5JTZ9 985 aaKnown RBP10□□□□□ -0.81
VPS53-220ENST00000576149 OGFOD2Q6N063 350 aa10□□□□□ -0.81
VPS53-220ENST00000576149 ARPINQ7Z6K5 226 aa10□□□□□ -0.81
VPS53-220ENST00000576149 HERC6Q8IVU3 1022 aa10□□□□□ -0.81
VPS53-220ENST00000576149 CD200R1Q8TD46 325 aa10□□□□□ -0.81
VPS53-220ENST00000576149 ZNF483Q8TF39 744 aaPredicted RBP10□□□□□ -0.81
VPS53-220ENST00000576149 EEF1AKMT1Q8WVE0 214 aa10□□□□□ -0.81
VPS53-220ENST00000576149 SLCO4A1Q96BD0 722 aa10□□□□□ -0.81
VPS53-220ENST00000576149 CAPNS2Q96L46 248 aa10□□□□□ -0.81
VPS53-220ENST00000576149 HOPXQ9BPY8 73 aaPredicted RBP10□□□□□ -0.81
VPS53-220ENST00000576149 PIDD1Q9HB75 910 aa10□□□□□ -0.81
VPS53-220ENST00000576149 PCTPQ9UKL6 214 aa10□□□□□ -0.81
VPS53-220ENST00000576149 YIPF1Q9Y548 306 aa10□□□□□ -0.81
VPS53-220ENST00000576149 AP4B1Q9Y6B7 739 aa10□□□□□ -0.81
VPS53-220ENST00000576149 FZD6O60353 706 aa9.99□□□□□ -0.81
VPS53-220ENST00000576149 ESRRBO95718 433 aa9.99□□□□□ -0.81
VPS53-220ENST00000576149 MLYCDO95822 493 aa9.99□□□□□ -0.81
VPS53-220ENST00000576149 IDO1P14902 403 aa9.99□□□□□ -0.81
VPS53-220ENST00000576149 CAPN3P20807 821 aa9.99□□□□□ -0.81
VPS53-220ENST00000576149 MZF1P28698 734 aaPredicted RBP9.99□□□□□ -0.81
VPS53-220ENST00000576149 PRDX3P30048 256 aaKnown RBP9.99□□□□□ -0.81
VPS53-220ENST00000576149 SLC7A1P30825 629 aa9.99□□□□□ -0.81
VPS53-220ENST00000576149 PTGER3P43115 390 aa9.99□□□□□ -0.81
VPS53-220ENST00000576149 HSPA13P48723 471 aa9.99□□□□□ -0.81
VPS53-220ENST00000576149 AGTR2P50052 363 aa9.99□□□□□ -0.81
VPS53-220ENST00000576149 HK3P52790 923 aa9.99□□□□□ -0.81
VPS53-220ENST00000576149 IL2P60568 153 aa9.99□□□□□ -0.81
VPS53-220ENST00000576149 TAF12Q16514 161 aa9.99□□□□□ -0.81
VPS53-220ENST00000576149 LIN52Q52LA3 116 aa9.99□□□□□ -0.81
VPS53-220ENST00000576149 TPGS2Q68CL5 300 aa9.99□□□□□ -0.81
VPS53-220ENST00000576149 SYVN1Q86TM6 617 aa9.99□□□□□ -0.81
VPS53-220ENST00000576149 MINDY1Q8N5J2 469 aa9.99□□□□□ -0.81
VPS53-220ENST00000576149 LINGO1Q96FE5 620 aa9.99□□□□□ -0.81
VPS53-220ENST00000576149 LRCH3Q96II8 777 aa9.99□□□□□ -0.81
VPS53-220ENST00000576149 ZFRQ96KR1 1074 aaKnown RBP9.99□□□□□ -0.81
VPS53-220ENST00000576149 FEM1AQ9BSK4 669 aa9.99□□□□□ -0.81
VPS53-220ENST00000576149 NUSAP1Q9BXS6 441 aaKnown RBP9.99□□□□□ -0.81
VPS53-220ENST00000576149 SLC52A3Q9NQ40 469 aa9.99□□□□□ -0.81
VPS53-220ENST00000576149 UBAP1Q9NZ09 502 aa9.99□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms