RNA–Protein interactions for RNA: ENST00000576019.5

VPS53-219, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 613 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-219ENST00000576019 LIPT1Q9Y234 373 aa5.86□□□□□ -1.47
VPS53-219ENST00000576019 RRP15Q9Y3B9 282 aaKnown RBP5.86□□□□□ -1.47
VPS53-219ENST00000576019 DOPEY2Q9Y3R5 2298 aa5.86□□□□□ -1.47
VPS53-219ENST00000576019 PTPRQQ9UMZ3 2332 aa5.85□□□□□ -1.47
VPS53-219ENST00000576019 MYO7AQ13402 2215 aa5.85□□□□□ -1.47
VPS53-219ENST00000576019 MAST3O60307 1309 aa5.85□□□□□ -1.47
VPS53-219ENST00000576019 MYOCOSA0A1B0GUC4 107 aa5.85□□□□□ -1.47
VPS53-219ENST00000576019 A0A1W2PS29 197 aa5.85□□□□□ -1.47
VPS53-219ENST00000576019 TCRBV21S2A2A0A5A6 115 aa5.85□□□□□ -1.47
VPS53-219ENST00000576019 A1L4Q6 167 aa5.85□□□□□ -1.47
VPS53-219ENST00000576019 PLOD2O00469 737 aa5.85□□□□□ -1.47
VPS53-219ENST00000576019 PGRMC2O15173 223 aa5.85□□□□□ -1.47
VPS53-219ENST00000576019 ASAP2O43150 1006 aa5.85□□□□□ -1.47
VPS53-219ENST00000576019 PRPSAP2O60256 369 aa5.85□□□□□ -1.47
VPS53-219ENST00000576019 PEX10O60683 326 aa5.85□□□□□ -1.47
VPS53-219ENST00000576019 SOCS5O75159 536 aa5.85□□□□□ -1.47
VPS53-219ENST00000576019 NDUFS3O75489 264 aa5.85□□□□□ -1.47
VPS53-219ENST00000576019 NKX2-2O95096 273 aa5.85□□□□□ -1.47
VPS53-219ENST00000576019 GCNT3O95395 438 aa5.85□□□□□ -1.47
VPS53-219ENST00000576019 DDAH2O95865 285 aa5.85□□□□□ -1.47
VPS53-219ENST00000576019 PGK1P00558 417 aa5.85□□□□□ -1.47
VPS53-219ENST00000576019 ADAP00813 363 aa5.85□□□□□ -1.47
VPS53-219ENST00000576019 TPM2P07951 284 aa5.85□□□□□ -1.47
VPS53-219ENST00000576019 INHBAP08476 426 aa5.85□□□□□ -1.47
VPS53-219ENST00000576019 LAG3P18627 525 aa5.85□□□□□ -1.47
VPS53-219ENST00000576019 LIPAP38571 399 aa5.85□□□□□ -1.47
VPS53-219ENST00000576019 TDO2P48775 406 aa5.85□□□□□ -1.47
VPS53-219ENST00000576019 NT5C2P49902 561 aa5.85□□□□□ -1.47
VPS53-219ENST00000576019 SLC37A1P57057 533 aa5.85□□□□□ -1.47
VPS53-219ENST00000576019 RPS7P62081 194 aaKnown RBP5.85□□□□□ -1.47
VPS53-219ENST00000576019 TUBB4BP68371 445 aa5.85□□□□□ -1.47
VPS53-219ENST00000576019 CYP4A11Q02928 519 aa5.85□□□□□ -1.47
VPS53-219ENST00000576019 HYAL1Q12794 435 aa5.85□□□□□ -1.47
VPS53-219ENST00000576019 FGFBP1Q14512 234 aa5.85□□□□□ -1.47
VPS53-219ENST00000576019 HLXQ14774 488 aaPredicted RBP5.85□□□□□ -1.47
VPS53-219ENST00000576019 PPP2R5BQ15173 497 aa5.85□□□□□ -1.47
VPS53-219ENST00000576019 RNPS1Q15287 305 aaKnown RBP5.85□□□□□ -1.47
VPS53-219ENST00000576019 GEN1Q17RS7 908 aa5.85□□□□□ -1.47
VPS53-219ENST00000576019 FBLN7Q53RD9 439 aa5.85□□□□□ -1.47
VPS53-219ENST00000576019 SERTAD4-AS1Q5TG53 156 aa5.85□□□□□ -1.47
VPS53-219ENST00000576019 TMEM88Q6PEY1 159 aa5.85□□□□□ -1.47
VPS53-219ENST00000576019 CFAP77Q6ZQR2 320 aa5.85□□□□□ -1.47
VPS53-219ENST00000576019 DSG4Q86SJ6 1040 aa5.85□□□□□ -1.47
VPS53-219ENST00000576019 HOOK3Q86VS8 718 aa5.85□□□□□ -1.47
VPS53-219ENST00000576019 FAM217AQ8IXS0 508 aa5.85□□□□□ -1.47
VPS53-219ENST00000576019 TXNDC5Q8NBS9 432 aaKnown RBP5.85□□□□□ -1.47
VPS53-219ENST00000576019 ZNF540Q8NDQ6 660 aa5.85□□□□□ -1.47
VPS53-219ENST00000576019 MCUQ8NE86 351 aa5.85□□□□□ -1.47
VPS53-219ENST00000576019 PDLIM5Q96HC4 596 aaKnown RBP5.85□□□□□ -1.47
VPS53-219ENST00000576019 NLRP4Q96MN2 994 aa5.85□□□□□ -1.47
VPS53-219ENST00000576019 OR2A14Q96R47 310 aa5.85□□□□□ -1.47
VPS53-219ENST00000576019 INTS14Q96SY0 518 aa5.85□□□□□ -1.47
VPS53-219ENST00000576019 FERMT1Q9BQL6 677 aa5.85□□□□□ -1.47
VPS53-219ENST00000576019 NUF2Q9BZD4 464 aa5.85□□□□□ -1.47
VPS53-219ENST00000576019 AMBRA1Q9C0C7 1298 aa5.85□□□□□ -1.47
VPS53-219ENST00000576019 C1orf21Q9H246 121 aa5.85□□□□□ -1.47
VPS53-219ENST00000576019 LIN28AQ9H9Z2 209 aaKnown RBP5.85□□□□□ -1.47
VPS53-219ENST00000576019 MAGEE1Q9HCI5 957 aa5.85□□□□□ -1.47
VPS53-219ENST00000576019 RANGRFQ9HD47 186 aaPredicted RBP5.85□□□□□ -1.47
VPS53-219ENST00000576019 SIRT3Q9NTG7 399 aaPredicted RBP5.85□□□□□ -1.47
VPS53-219ENST00000576019 ABCB8Q9NUT2 735 aa5.85□□□□□ -1.47
VPS53-219ENST00000576019 CPSF3Q9UKF6 684 aaKnown RBP5.85□□□□□ -1.47
VPS53-219ENST00000576019 UTP18Q9Y5J1 556 aaKnown RBP eCLIP5.85□□□□□ -1.47
VPS53-219ENST00000576019 SPG11Q96JI7 2443 aa5.85□□□□□ -1.47
VPS53-219ENST00000576019 ROBO3Q96MS0 1386 aa5.84□□□□□ -1.47
VPS53-219ENST00000576019 MAPK8IP3Q9UPT6 1336 aa5.84□□□□□ -1.47
VPS53-219ENST00000576019 LOC100509620A0A075B734 347 aa5.84□□□□□ -1.47
VPS53-219ENST00000576019 MYADML2A6NDP7 307 aa5.84□□□□□ -1.47
VPS53-219ENST00000576019 ZNF185O15231 689 aa5.84□□□□□ -1.47
VPS53-219ENST00000576019 STRNO43815 780 aa5.84□□□□□ -1.47
VPS53-219ENST00000576019 CDC14BO60729 498 aa5.84□□□□□ -1.47
VPS53-219ENST00000576019 PRAMEF2O60811 474 aa5.84□□□□□ -1.47
VPS53-219ENST00000576019 ADAMTS4O75173 837 aa5.84□□□□□ -1.47
VPS53-219ENST00000576019 PMPCBO75439 489 aa5.84□□□□□ -1.47
VPS53-219ENST00000576019 CBX6O95503 412 aa5.84□□□□□ -1.47
VPS53-219ENST00000576019 FESP07332 822 aa5.84□□□□□ -1.47
VPS53-219ENST00000576019 ALDOCP09972 364 aaKnown RBP5.84□□□□□ -1.47
VPS53-219ENST00000576019 ACTN1P12814 892 aa5.84□□□□□ -1.47
VPS53-219ENST00000576019 MMP9P14780 707 aa5.84□□□□□ -1.47
VPS53-219ENST00000576019 PTPN3P26045 913 aa5.84□□□□□ -1.47
VPS53-219ENST00000576019 TYK2P29597 1187 aa5.84□□□□□ -1.47
VPS53-219ENST00000576019 CLCN3P51790 818 aa5.84□□□□□ -1.47
VPS53-219ENST00000576019 FAM189BP81408 668 aa5.84□□□□□ -1.47
VPS53-219ENST00000576019 TXNL4AP83876 142 aaKnown RBP5.84□□□□□ -1.47
VPS53-219ENST00000576019 KLHL30Q0D2K2 578 aa5.84□□□□□ -1.47
VPS53-219ENST00000576019 CAPSQ13938 189 aa5.84□□□□□ -1.47
VPS53-219ENST00000576019 VEPH1Q14D04 833 aa5.84□□□□□ -1.47
VPS53-219ENST00000576019 TAF7Q15545 349 aaPredicted RBP5.84□□□□□ -1.47
VPS53-219ENST00000576019 ELAVL1Q15717 326 aaKnown RBP5.84□□□□□ -1.47
VPS53-219ENST00000576019 EDRF1Q3B7T1 1238 aa5.84□□□□□ -1.47
VPS53-219ENST00000576019 C6orf163Q5TEZ5 329 aa5.84□□□□□ -1.47
VPS53-219ENST00000576019 TXNDC8Q6A555 127 aa5.84□□□□□ -1.47
VPS53-219ENST00000576019 KYAT3Q6YP21 454 aaKnown RBP5.84□□□□□ -1.47
VPS53-219ENST00000576019 MAVSQ7Z434 540 aa5.84□□□□□ -1.47
VPS53-219ENST00000576019 ADCK2Q7Z695 626 aa5.84□□□□□ -1.47
VPS53-219ENST00000576019 IQCHQ86VS3 1027 aa5.84□□□□□ -1.47
VPS53-219ENST00000576019 TDRPQ86YL5 185 aa5.84□□□□□ -1.47
VPS53-219ENST00000576019 TMPRSS6Q8IU80 811 aa5.84□□□□□ -1.47
VPS53-219ENST00000576019 SCYL3Q8IZE3 742 aa5.84□□□□□ -1.47
VPS53-219ENST00000576019 ADGRF3Q8IZF5 1079 aa5.84□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 88.8 ms