RNA–Protein interactions for RNA: ENST00000575207.5

VPS53-218, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 575 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-218ENST00000575207 PRKD1Q15139 912 aaPredicted RBP15.94■□□□□ 0.14
VPS53-218ENST00000575207 DNAAF5Q86Y56 855 aa15.94■□□□□ 0.14
VPS53-218ENST00000575207 CAMK1DQ8IU85 385 aa15.94■□□□□ 0.14
VPS53-218ENST00000575207 GALNT13Q8IUC8 556 aa15.94■□□□□ 0.14
VPS53-218ENST00000575207 PGAP3Q96FM1 320 aaPredicted RBP15.94■□□□□ 0.14
VPS53-218ENST00000575207 ZDHHC12Q96GR4 267 aa15.94■□□□□ 0.14
VPS53-218ENST00000575207 TAAR6Q96RI8 345 aa15.94■□□□□ 0.14
VPS53-218ENST00000575207 NPY6RQ99463 290 aa15.94■□□□□ 0.14
VPS53-218ENST00000575207 MLPHQ9BV36 600 aaPredicted RBP15.94■□□□□ 0.14
VPS53-218ENST00000575207 RETREG1Q9H6L5 497 aa15.94■□□□□ 0.14
VPS53-218ENST00000575207 EXOC1Q9NV70 894 aa15.94■□□□□ 0.14
VPS53-218ENST00000575207 LHX3Q9UBR4 397 aa15.94■□□□□ 0.14
VPS53-218ENST00000575207 ST6GALNAC2Q9UJ37 374 aa15.94■□□□□ 0.14
VPS53-218ENST00000575207 ZSCAN21Q9Y5A6 473 aaPredicted RBP15.94■□□□□ 0.14
VPS53-218ENST00000575207 IGHV5-51A0A0C4DH38 117 aa15.93■□□□□ 0.14
VPS53-218ENST00000575207 CCDC78A2IDD5 438 aa15.93■□□□□ 0.14
VPS53-218ENST00000575207 KLRC4O43908 158 aa15.93■□□□□ 0.14
VPS53-218ENST00000575207 ESRRAP11474 423 aaPredicted RBP15.93■□□□□ 0.14
VPS53-218ENST00000575207 OTX2P32243 289 aa15.93■□□□□ 0.14
VPS53-218ENST00000575207 RORAP35398 523 aa15.93■□□□□ 0.14
VPS53-218ENST00000575207 HADHAP40939 763 aa15.93■□□□□ 0.14
VPS53-218ENST00000575207 CASP6P55212 293 aa15.93■□□□□ 0.14
VPS53-218ENST00000575207 PDCLQ13371 301 aa15.93■□□□□ 0.14
VPS53-218ENST00000575207 FAM92BQ6ZTR7 304 aa15.93■□□□□ 0.14
VPS53-218ENST00000575207 NLRP14Q86W24 1093 aa15.93■□□□□ 0.14
VPS53-218ENST00000575207 TMEM126BQ8IUX1 230 aa15.93■□□□□ 0.14
VPS53-218ENST00000575207 UBXN4Q92575 508 aa15.93■□□□□ 0.14
VPS53-218ENST00000575207 ECHDC3Q96DC8 303 aa15.93■□□□□ 0.14
VPS53-218ENST00000575207 CNDP1Q96KN2 507 aa15.93■□□□□ 0.14
VPS53-218ENST00000575207 EXOC2Q96KP1 924 aa15.93■□□□□ 0.14
VPS53-218ENST00000575207 GBP5Q96PP8 586 aa15.93■□□□□ 0.14
VPS53-218ENST00000575207 TUBGCP5Q96RT8 1024 aa15.93■□□□□ 0.14
VPS53-218ENST00000575207 RAB33BQ9H082 229 aa15.93■□□□□ 0.14
VPS53-218ENST00000575207 BTRCQ9Y297 605 aa15.93■□□□□ 0.14
VPS53-218ENST00000575207 TMEM98Q9Y2Y6 226 aa15.93■□□□□ 0.14
VPS53-218ENST00000575207 PCDHGC4Q9Y5F7 938 aa15.93■□□□□ 0.14
VPS53-218ENST00000575207 DOCK10Q96BY6 2186 aa15.93■□□□□ 0.14
VPS53-218ENST00000575207 TRIM49BA6NDI0 452 aa15.92■□□□□ 0.14
VPS53-218ENST00000575207 FOXO6A8MYZ6 492 aa15.92■□□□□ 0.14
VPS53-218ENST00000575207 PEX12O00623 359 aa15.92■□□□□ 0.14
VPS53-218ENST00000575207 DAB1O75553 588 aa15.92■□□□□ 0.14
VPS53-218ENST00000575207 EBLN1P0CF75 366 aa15.92■□□□□ 0.14
VPS53-218ENST00000575207 TFE3P19532 575 aaPredicted RBP15.92■□□□□ 0.14
VPS53-218ENST00000575207 RPL13P26373 211 aaKnown RBP15.92■□□□□ 0.14
VPS53-218ENST00000575207 PCSK6P29122 969 aa15.92■□□□□ 0.14
VPS53-218ENST00000575207 SSPNQ14714 243 aa15.92■□□□□ 0.14
VPS53-218ENST00000575207 NCF4Q15080 339 aa15.92■□□□□ 0.14
VPS53-218ENST00000575207 PHC2Q8IXK0 858 aa15.92■□□□□ 0.14
VPS53-218ENST00000575207 RSC1A1Q92681 617 aa15.92■□□□□ 0.14
VPS53-218ENST00000575207 NT5C3BQ969T7 300 aa15.92■□□□□ 0.14
VPS53-218ENST00000575207 DTD2Q96FN9 168 aa15.92■□□□□ 0.14
VPS53-218ENST00000575207 INTS4Q96HW7 963 aaKnown RBP15.92■□□□□ 0.14
VPS53-218ENST00000575207 ATP13A2Q9NQ11 1180 aa15.92■□□□□ 0.14
VPS53-218ENST00000575207 KCND1Q9NSA2 647 aa15.92■□□□□ 0.14
VPS53-218ENST00000575207 TMEM51Q9NW97 253 aa15.92■□□□□ 0.14
VPS53-218ENST00000575207 MAPK8IP1Q9UQF2 711 aa15.92■□□□□ 0.14
VPS53-218ENST00000575207 SPTBP11277 2137 aa15.91■□□□□ 0.14
VPS53-218ENST00000575207 RAMP2O60895 175 aa15.91■□□□□ 0.14
VPS53-218ENST00000575207 KLF7O75840 302 aaPredicted RBP15.91■□□□□ 0.14
VPS53-218ENST00000575207 TUBB4BP68371 445 aa15.91■□□□□ 0.14
VPS53-218ENST00000575207 RBPJQ06330 500 aa15.91■□□□□ 0.14
VPS53-218ENST00000575207 TUBB2AQ13885 445 aa15.91■□□□□ 0.14
VPS53-218ENST00000575207 DSG2Q14126 1118 aa15.91■□□□□ 0.14
VPS53-218ENST00000575207 RAET1GQ6H3X3 334 aa15.91■□□□□ 0.14
VPS53-218ENST00000575207 FAM173BQ6P4H8 233 aa15.91■□□□□ 0.14
VPS53-218ENST00000575207 MARK2Q7KZI7 788 aaKnown RBP15.91■□□□□ 0.14
VPS53-218ENST00000575207 LZTR1Q8N653 840 aa15.91■□□□□ 0.14
VPS53-218ENST00000575207 WFDC11Q8NEX6 87 aa15.91■□□□□ 0.14
VPS53-218ENST00000575207 OR8K5Q8NH50 307 aa15.91■□□□□ 0.14
VPS53-218ENST00000575207 PCMTD1Q96MG8 357 aaPredicted RBP15.91■□□□□ 0.14
VPS53-218ENST00000575207 PLEKHG4BQ96PX9 1271 aa15.91■□□□□ 0.14
VPS53-218ENST00000575207 TUBB2BQ9BVA1 445 aa15.91■□□□□ 0.14
VPS53-218ENST00000575207 GPAMQ9HCL2 828 aa15.91■□□□□ 0.14
VPS53-218ENST00000575207 P4HTMQ9NXG6 502 aa15.91■□□□□ 0.14
VPS53-218ENST00000575207 DNAI1Q9UI46 699 aa15.91■□□□□ 0.14
VPS53-218ENST00000575207 INTS1Q8N201 2190 aaKnown RBP15.91■□□□□ 0.14
VPS53-218ENST00000575207 A8MX80 341 aa15.9■□□□□ 0.14
VPS53-218ENST00000575207 XRCC1P18887 633 aaPredicted RBP15.9■□□□□ 0.14
VPS53-218ENST00000575207 POLR2LP62875 67 aaKnown RBP15.9■□□□□ 0.14
VPS53-218ENST00000575207 CYTH1Q15438 398 aa15.9■□□□□ 0.14
VPS53-218ENST00000575207 INAQ16352 499 aa15.9■□□□□ 0.14
VPS53-218ENST00000575207 OLFML1Q6UWY5 402 aa15.9■□□□□ 0.14
VPS53-218ENST00000575207 SLC26A9Q7LBE3 791 aa15.9■□□□□ 0.14
VPS53-218ENST00000575207 FNIP1Q8TF40 1166 aa15.9■□□□□ 0.14
VPS53-218ENST00000575207 CPT1BQ92523 772 aa15.9■□□□□ 0.14
VPS53-218ENST00000575207 ZNF559Q9BR84 538 aa15.9■□□□□ 0.14
VPS53-218ENST00000575207 DHRS4Q9BTZ2 278 aa15.9■□□□□ 0.14
VPS53-218ENST00000575207 TMEM248Q9NWD8 314 aa15.9■□□□□ 0.14
VPS53-218ENST00000575207 SMC3Q9UQE7 1217 aa15.9■□□□□ 0.14
VPS53-218ENST00000575207 PADI2Q9Y2J8 665 aa15.9■□□□□ 0.14
VPS53-218ENST00000575207 PCYT1BQ9Y5K3 369 aaPredicted RBP15.9■□□□□ 0.14
VPS53-218ENST00000575207 PCM1Q15154 2024 aa15.89■□□□□ 0.13
VPS53-218ENST00000575207 RNF212BA8MTL3 300 aa15.89■□□□□ 0.13
VPS53-218ENST00000575207 POLR2DO15514 142 aaKnown RBP15.89■□□□□ 0.13
VPS53-218ENST00000575207 SLC19A2O60779 497 aa15.89■□□□□ 0.13
VPS53-218ENST00000575207 LY6G6DO95868 133 aa15.89■□□□□ 0.13
VPS53-218ENST00000575207 SOD1P00441 154 aa15.89■□□□□ 0.13
VPS53-218ENST00000575207 RHOQP17081 205 aa15.89■□□□□ 0.13
VPS53-218ENST00000575207 DEUP1Q05D60 604 aa15.89■□□□□ 0.13
VPS53-218ENST00000575207 DPTQ07507 201 aa15.89■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms