RNA–Protein interactions for RNA: ENST00000571805.5

VPS53-211, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,356 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-211ENST00000571805 FOXM1Q08050 763 aa22.63■■□□□ 1.21
VPS53-211ENST00000571805 BNIP2Q12982 314 aa22.63■■□□□ 1.21
VPS53-211ENST00000571805 PTPRNQ16849 979 aa22.63■■□□□ 1.21
VPS53-211ENST00000571805 SPATA19Q7Z5L4 167 aa22.63■■□□□ 1.21
VPS53-211ENST00000571805 TSPAN14Q8NG11 270 aa22.63■■□□□ 1.21
VPS53-211ENST00000571805 ANKRD60Q9BZ19 345 aa22.63■■□□□ 1.21
VPS53-211ENST00000571805 TMEM161AQ9NX61 479 aa22.63■■□□□ 1.21
VPS53-211ENST00000571805 ACTR3BQ9P1U1 418 aa22.63■■□□□ 1.21
VPS53-211ENST00000571805 NPEPPSL1A6NEC2 478 aa22.62■■□□□ 1.21
VPS53-211ENST00000571805 SYCE1LA8MT33 242 aa22.62■■□□□ 1.21
VPS53-211ENST00000571805 STX16O14662 325 aa22.62■■□□□ 1.21
VPS53-211ENST00000571805 HNRNPRO43390 633 aaKnown RBP22.62■■□□□ 1.21
VPS53-211ENST00000571805 H6PDO95479 791 aa22.62■■□□□ 1.21
VPS53-211ENST00000571805 TSPAN12O95859 305 aa22.62■■□□□ 1.21
VPS53-211ENST00000571805 APLP1P51693 650 aa22.62■■□□□ 1.21
VPS53-211ENST00000571805 CDH4P55283 916 aa22.62■■□□□ 1.21
VPS53-211ENST00000571805 RPS24P62847 133 aaKnown RBP22.62■■□□□ 1.21
VPS53-211ENST00000571805 CAP1Q01518 475 aa22.62■■□□□ 1.21
VPS53-211ENST00000571805 MAP7Q14244 749 aa22.62■■□□□ 1.21
VPS53-211ENST00000571805 SYVN1Q86TM6 617 aa22.62■■□□□ 1.21
VPS53-211ENST00000571805 PIANPQ8IYJ0 282 aa22.62■■□□□ 1.21
VPS53-211ENST00000571805 NKAPQ8N5F7 415 aaKnown RBP22.62■■□□□ 1.21
VPS53-211ENST00000571805 TSPEARQ8WU66 669 aa22.62■■□□□ 1.21
VPS53-211ENST00000571805 TEX37Q96LM6 180 aa22.62■■□□□ 1.21
VPS53-211ENST00000571805 TDRD1Q9BXT4 1180 aaKnown RBP22.62■■□□□ 1.21
VPS53-211ENST00000571805 PCTPQ9UKL6 214 aa22.62■■□□□ 1.21
VPS53-211ENST00000571805 ARIH1Q9Y4X5 557 aaPredicted RBP22.62■■□□□ 1.21
VPS53-211ENST00000571805 DHRS12A0PJE2 317 aa22.62■■□□□ 1.21
VPS53-211ENST00000571805 ASPDHA6ND91 283 aa22.62■■□□□ 1.21
VPS53-211ENST00000571805 TMEM88BA6NKF7 163 aa22.62■■□□□ 1.21
VPS53-211ENST00000571805 SLC38A8A6NNN8 435 aa22.62■■□□□ 1.21
VPS53-211ENST00000571805 H3BNH8 94 aa22.62■■□□□ 1.21
VPS53-211ENST00000571805 XKR7Q5GH72 579 aa22.62■■□□□ 1.21
VPS53-211ENST00000571805 TBCELQ5QJ74 424 aa22.62■■□□□ 1.21
VPS53-211ENST00000571805 GOLM1Q8NBJ4 401 aa22.62■■□□□ 1.21
VPS53-211ENST00000571805 TRIM15Q9C019 465 aa22.62■■□□□ 1.21
VPS53-211ENST00000571805 AIG1Q9NVV5 245 aa22.62■■□□□ 1.21
VPS53-211ENST00000571805 A0A1W2PP18 115 aa22.61■■□□□ 1.21
VPS53-211ENST00000571805 C2orf81A6NN90 581 aa22.61■■□□□ 1.21
VPS53-211ENST00000571805 BTN3A1O00481 513 aa22.61■■□□□ 1.21
VPS53-211ENST00000571805 ENPP3O14638 875 aa22.61■■□□□ 1.21
VPS53-211ENST00000571805 ESRRBO95718 433 aa22.61■■□□□ 1.21
VPS53-211ENST00000571805 CYBBP04839 570 aa22.61■■□□□ 1.21
VPS53-211ENST00000571805 ELNP15502 786 aa22.61■■□□□ 1.21
VPS53-211ENST00000571805 ATF6P18850 670 aa22.61■■□□□ 1.21
VPS53-211ENST00000571805 OXCT1P55809 520 aa22.61■■□□□ 1.21
VPS53-211ENST00000571805 RTP2Q5QGT7 225 aa22.61■■□□□ 1.21
VPS53-211ENST00000571805 PSAPL1Q6NUJ1 521 aa22.61■■□□□ 1.21
VPS53-211ENST00000571805 UGT3A1Q6NUS8 523 aa22.61■■□□□ 1.21
VPS53-211ENST00000571805 GRIN3AQ8TCU5 1115 aa22.61■■□□□ 1.21
VPS53-211ENST00000571805 TFAP2CQ92754 450 aa22.61■■□□□ 1.21
VPS53-211ENST00000571805 TMEM125Q96AQ2 219 aa22.61■■□□□ 1.21
VPS53-211ENST00000571805 NUSAP1Q9BXS6 441 aaKnown RBP22.61■■□□□ 1.21
VPS53-211ENST00000571805 RETREG1Q9H6L5 497 aa22.61■■□□□ 1.21
VPS53-211ENST00000571805 AGPAT4Q9NRZ5 378 aa22.61■■□□□ 1.21
VPS53-211ENST00000571805 AURKCQ9UQB9 309 aa22.61■■□□□ 1.21
VPS53-211ENST00000571805 DLGAP1O14490 977 aa22.61■■□□□ 1.21
VPS53-211ENST00000571805 CRCPO75575 148 aa22.61■■□□□ 1.21
VPS53-211ENST00000571805 F11P03951 625 aa22.61■■□□□ 1.21
VPS53-211ENST00000571805 NELFEP18615 380 aaKnown RBP22.61■■□□□ 1.21
VPS53-211ENST00000571805 GRIK2Q13002 908 aa22.61■■□□□ 1.21
VPS53-211ENST00000571805 INPP5AQ14642 412 aa22.61■■□□□ 1.21
VPS53-211ENST00000571805 SPATS1Q496A3 300 aa22.61■■□□□ 1.21
VPS53-211ENST00000571805 PABPC1LQ4VXU2 614 aaKnown RBP22.61■■□□□ 1.21
VPS53-211ENST00000571805 ZNF512Q96ME7 567 aaPredicted RBP22.61■■□□□ 1.21
VPS53-211ENST00000571805 TTLL2Q9BWV7 592 aa22.61■■□□□ 1.21
VPS53-211ENST00000571805 TRIM8Q9BZR9 551 aa22.61■■□□□ 1.21
VPS53-211ENST00000571805 PNPLA3Q9NST1 481 aa22.61■■□□□ 1.21
VPS53-211ENST00000571805 DNMT3LQ9UJW3 386 aa22.61■■□□□ 1.21
VPS53-211ENST00000571805 CEPT1Q9Y6K0 416 aa22.61■■□□□ 1.21
VPS53-211ENST00000571805 HTTP42858 3142 aa22.61■■□□□ 1.21
VPS53-211ENST00000571805 THSD7BQ9C0I4 1608 aa22.6■■□□□ 1.21
VPS53-211ENST00000571805 ARHGAP10A1A4S6 786 aa22.6■■□□□ 1.21
VPS53-211ENST00000571805 CCDC160A6NGH7 325 aa22.6■■□□□ 1.21
VPS53-211ENST00000571805 NCF1BA6NI72 391 aaPredicted RBP22.6■■□□□ 1.21
VPS53-211ENST00000571805 NCF1CA8MVU1 366 aaPredicted RBP22.6■■□□□ 1.21
VPS53-211ENST00000571805 OR1I1O60431 355 aa22.6■■□□□ 1.21
VPS53-211ENST00000571805 PYGLP06737 847 aa22.6■■□□□ 1.21
VPS53-211ENST00000571805 NCF1P14598 390 aaPredicted RBP22.6■■□□□ 1.21
VPS53-211ENST00000571805 PKMP14618 531 aaKnown RBP22.6■■□□□ 1.21
VPS53-211ENST00000571805 ZNF23P17027 643 aa22.6■■□□□ 1.21
VPS53-211ENST00000571805 HK3P52790 923 aa22.6■■□□□ 1.21
VPS53-211ENST00000571805 RCAN2Q14206 197 aa22.6■■□□□ 1.21
VPS53-211ENST00000571805 INTS11Q5TA45 600 aaKnown RBP22.6■■□□□ 1.21
VPS53-211ENST00000571805 EPHX4Q8IUS5 362 aa22.6■■□□□ 1.21
VPS53-211ENST00000571805 PACRGLQ8N7B6 248 aa22.6■■□□□ 1.21
VPS53-211ENST00000571805 MFSD2AQ8NA29 543 aa22.6■■□□□ 1.21
VPS53-211ENST00000571805 ZIC5Q96T25 663 aa22.6■■□□□ 1.21
VPS53-211ENST00000571805 SCUBE2Q9NQ36 999 aa22.6■■□□□ 1.21
VPS53-211ENST00000571805 HCSTQ9UBK5 93 aa22.6■■□□□ 1.21
VPS53-211ENST00000571805 MYRFQ9Y2G1 1151 aa22.6■■□□□ 1.21
VPS53-211ENST00000571805 SAC3D1A6NKF1 404 aa22.6■■□□□ 1.21
VPS53-211ENST00000571805 H3BSA7 217 aa22.6■■□□□ 1.21
VPS53-211ENST00000571805 ARPC2O15144 300 aa22.6■■□□□ 1.21
VPS53-211ENST00000571805 UROSP10746 265 aa22.6■■□□□ 1.21
VPS53-211ENST00000571805 UGT1A6P19224 532 aa22.6■■□□□ 1.21
VPS53-211ENST00000571805 LPOP22079 712 aaPredicted RBP22.6■■□□□ 1.21
VPS53-211ENST00000571805 ATP5C1P36542 298 aaKnown RBP22.6■■□□□ 1.21
VPS53-211ENST00000571805 GATMP50440 423 aa22.6■■□□□ 1.21
VPS53-211ENST00000571805 NAA20P61599 178 aa22.6■■□□□ 1.21
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms