RNA–Protein interactions for RNA: ENST00000568232.1

CLK3-222, Transcript of CDC like kinase 3, humanhuman

Gene CLK3, Length 958 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-222ENST00000568232 INPP5DQ92835 1189 aa11.61□□□□□ -0.55
CLK3-222ENST00000568232 WNT2BQ93097 391 aa11.61□□□□□ -0.55
CLK3-222ENST00000568232 SMIM14Q96QK8 99 aa11.61□□□□□ -0.55
CLK3-222ENST00000568232 SMAD5Q99717 465 aaKnown RBP11.61□□□□□ -0.55
CLK3-222ENST00000568232 CINPQ9BW66 212 aaPredicted RBP11.61□□□□□ -0.55
CLK3-222ENST00000568232 EPB41L1Q9H4G0 881 aa11.61□□□□□ -0.55
CLK3-222ENST00000568232 RUBCNLQ9H714 662 aa11.61□□□□□ -0.55
CLK3-222ENST00000568232 SIX2Q9NPC8 291 aa11.61□□□□□ -0.55
CLK3-222ENST00000568232 KCTD5Q9NXV2 234 aa11.61□□□□□ -0.55
CLK3-222ENST00000568232 GPR83Q9NYM4 423 aa11.61□□□□□ -0.55
CLK3-222ENST00000568232 SCHIP1Q9P0W5 487 aaPredicted RBP11.61□□□□□ -0.55
CLK3-222ENST00000568232 OSGIN2Q9Y236 505 aa11.61□□□□□ -0.55
CLK3-222ENST00000568232 B3GNT3Q9Y2A9 372 aa11.61□□□□□ -0.55
CLK3-222ENST00000568232 LILRA5A6NI73 299 aa11.6□□□□□ -0.55
CLK3-222ENST00000568232 C2CD4BA6NLJ0 364 aa11.6□□□□□ -0.55
CLK3-222ENST00000568232 TOX3O15405 576 aaPredicted RBP11.6□□□□□ -0.55
CLK3-222ENST00000568232 GNA14O95837 355 aa11.6□□□□□ -0.55
CLK3-222ENST00000568232 SNRPB2P08579 225 aaKnown RBP11.6□□□□□ -0.55
CLK3-222ENST00000568232 ACP5P13686 325 aa11.6□□□□□ -0.55
CLK3-222ENST00000568232 F3P13726 295 aa11.6□□□□□ -0.55
CLK3-222ENST00000568232 FOLR1P15328 257 aa11.6□□□□□ -0.55
CLK3-222ENST00000568232 AMD1P17707 334 aa11.6□□□□□ -0.55
CLK3-222ENST00000568232 PTPN9P43378 593 aa11.6□□□□□ -0.55
CLK3-222ENST00000568232 GLRBP48167 497 aa11.6□□□□□ -0.55
CLK3-222ENST00000568232 UBE2IP63279 158 aaKnown RBP11.6□□□□□ -0.55
CLK3-222ENST00000568232 NSUN2Q08J23 767 aaKnown RBP eCLIP11.6□□□□□ -0.55
CLK3-222ENST00000568232 EXOC3L4Q17RC7 722 aa11.6□□□□□ -0.55
CLK3-222ENST00000568232 NAA35Q5VZE5 725 aa11.6□□□□□ -0.55
CLK3-222ENST00000568232 LCN10Q6JVE6 187 aa11.6□□□□□ -0.55
CLK3-222ENST00000568232 ZNF517Q6ZMY9 492 aaPredicted RBP11.6□□□□□ -0.55
CLK3-222ENST00000568232 STRADAQ7RTN6 431 aa11.6□□□□□ -0.55
CLK3-222ENST00000568232 HPS6Q86YV9 775 aa11.6□□□□□ -0.55
CLK3-222ENST00000568232 FMR1NBQ8N0W7 255 aaPredicted RBP11.6□□□□□ -0.55
CLK3-222ENST00000568232 LZTR1Q8N653 840 aa11.6□□□□□ -0.55
CLK3-222ENST00000568232 SERBP1Q8NC51 408 aaKnown RBP eCLIP11.6□□□□□ -0.55
CLK3-222ENST00000568232 KLHL6Q8WZ60 621 aa11.6□□□□□ -0.55
CLK3-222ENST00000568232 RSC1A1Q92681 617 aa11.6□□□□□ -0.55
CLK3-222ENST00000568232 NTAN1Q96AB6 310 aa11.6□□□□□ -0.55
CLK3-222ENST00000568232 AP2M1Q96CW1 435 aa11.6□□□□□ -0.55
CLK3-222ENST00000568232 CCDC34Q96HJ3 373 aa11.6□□□□□ -0.55
CLK3-222ENST00000568232 COX14Q96I36 57 aa11.6□□□□□ -0.55
CLK3-222ENST00000568232 PLEKHG4BQ96PX9 1271 aa11.6□□□□□ -0.55
CLK3-222ENST00000568232 BARD1Q99728 777 aaKnown RBP11.6□□□□□ -0.55
CLK3-222ENST00000568232 HERPUD2Q9BSE4 406 aa11.6□□□□□ -0.55
CLK3-222ENST00000568232 CATSPERBQ9H7T0 1116 aa11.6□□□□□ -0.55
CLK3-222ENST00000568232 GDPD2Q9HCC8 539 aa11.6□□□□□ -0.55
CLK3-222ENST00000568232 MAN1B1Q9UKM7 699 aa11.6□□□□□ -0.55
CLK3-222ENST00000568232 G3BP2Q9UN86 482 aaKnown RBP11.6□□□□□ -0.55
CLK3-222ENST00000568232 KIR2DS5A0A0G2JLQ3 304 aa11.59□□□□□ -0.55
CLK3-222ENST00000568232 A0A0G2JNG1 304 aa11.59□□□□□ -0.55
CLK3-222ENST00000568232 HEATR9A2RTY3 570 aa11.59□□□□□ -0.55
CLK3-222ENST00000568232 KIR2DS3K7RE56 304 aa11.59□□□□□ -0.55
CLK3-222ENST00000568232 HTRA2O43464 458 aaPredicted RBP11.59□□□□□ -0.55
CLK3-222ENST00000568232 CPP00450 1065 aa11.59□□□□□ -0.55
CLK3-222ENST00000568232 MMEP08473 750 aa11.59□□□□□ -0.55
CLK3-222ENST00000568232 CTPS1P17812 591 aa11.59□□□□□ -0.55
CLK3-222ENST00000568232 NELFEP18615 380 aaKnown RBP11.59□□□□□ -0.55
CLK3-222ENST00000568232 PER3P56645 1201 aa11.59□□□□□ -0.55
CLK3-222ENST00000568232 PPP1CAP62136 330 aa11.59□□□□□ -0.55
CLK3-222ENST00000568232 NOMO3P69849 1222 aa11.59□□□□□ -0.55
CLK3-222ENST00000568232 PAK1Q13153 545 aa11.59□□□□□ -0.55
CLK3-222ENST00000568232 TUBB3Q13509 450 aa11.59□□□□□ -0.55
CLK3-222ENST00000568232 KIR2DS5Q14953 304 aa11.59□□□□□ -0.55
CLK3-222ENST00000568232 TESK1Q15569 626 aa11.59□□□□□ -0.55
CLK3-222ENST00000568232 HGSNATQ68CP4 663 aa11.59□□□□□ -0.55
CLK3-222ENST00000568232 SCYL2Q6P3W7 929 aa11.59□□□□□ -0.55
CLK3-222ENST00000568232 CERS6Q6ZMG9 384 aa11.59□□□□□ -0.55
CLK3-222ENST00000568232 PRSS42Q7Z5A4 293 aa11.59□□□□□ -0.55
CLK3-222ENST00000568232 GLIS1Q8NBF1 620 aa11.59□□□□□ -0.55
CLK3-222ENST00000568232 ST6GALNAC3Q8NDV1 305 aa11.59□□□□□ -0.55
CLK3-222ENST00000568232 UBE2Q2Q8WVN8 375 aa11.59□□□□□ -0.55
CLK3-222ENST00000568232 MR1Q95460 341 aa11.59□□□□□ -0.55
CLK3-222ENST00000568232 ILKAPQ9H0C8 392 aaPredicted RBP11.59□□□□□ -0.55
CLK3-222ENST00000568232 PDE7BQ9NP56 450 aa11.59□□□□□ -0.55
CLK3-222ENST00000568232 RARRES3Q9UL19 164 aa11.59□□□□□ -0.55
CLK3-222ENST00000568232 PCSK5Q92824 1860 aa11.58□□□□□ -0.56
CLK3-222ENST00000568232 A0A1B0GTL3 188 aa11.58□□□□□ -0.56
CLK3-222ENST00000568232 PSMD11O00231 422 aa11.58□□□□□ -0.56
CLK3-222ENST00000568232 CYP2A6P11509 494 aaPredicted RBP11.58□□□□□ -0.56
CLK3-222ENST00000568232 ITGA3P26006 1051 aa11.58□□□□□ -0.56
CLK3-222ENST00000568232 CA5AP35218 305 aa11.58□□□□□ -0.56
CLK3-222ENST00000568232 BPIFB4P59827 614 aa11.58□□□□□ -0.56
CLK3-222ENST00000568232 AP1S1P61966 158 aa11.58□□□□□ -0.56
CLK3-222ENST00000568232 GPS2Q13227 327 aa11.58□□□□□ -0.56
CLK3-222ENST00000568232 KYNUQ16719 465 aa11.58□□□□□ -0.56
CLK3-222ENST00000568232 ANO6Q4KMQ2 910 aa11.58□□□□□ -0.56
CLK3-222ENST00000568232 IRGCQ6NXR0 463 aa11.58□□□□□ -0.56
CLK3-222ENST00000568232 TMEM26Q6ZUK4 368 aa11.58□□□□□ -0.56
CLK3-222ENST00000568232 GDF7Q7Z4P5 450 aa11.58□□□□□ -0.56
CLK3-222ENST00000568232 NOP9Q86U38 636 aaKnown RBP11.58□□□□□ -0.56
CLK3-222ENST00000568232 FJX1Q86VR8 437 aa11.58□□□□□ -0.56
CLK3-222ENST00000568232 ZBTB2Q8N680 514 aa11.58□□□□□ -0.56
CLK3-222ENST00000568232 ARFGAP1Q8N6T3 406 aa11.58□□□□□ -0.56
CLK3-222ENST00000568232 ENDOVQ8N8Q3 282 aaKnown RBP11.58□□□□□ -0.56
CLK3-222ENST00000568232 SLC38A9Q8NBW4 561 aa11.58□□□□□ -0.56
CLK3-222ENST00000568232 MSANTD4Q8NCY6 345 aa11.58□□□□□ -0.56
CLK3-222ENST00000568232 RIOK2Q9BVS4 552 aaKnown RBP11.58□□□□□ -0.56
CLK3-222ENST00000568232 CHST8Q9H2A9 424 aa11.58□□□□□ -0.56
CLK3-222ENST00000568232 KIAA1468Q9P260 1216 aa11.58□□□□□ -0.56
CLK3-222ENST00000568232 COPG2Q9UBF2 871 aa11.58□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms