RNA–Protein interactions for RNA: ENST00000565778.6

CLN3-219, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 688 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-219ENST00000565778 TRIM39Q9HCM9 518 aa20.53■□□□□ 0.88
CLN3-219ENST00000565778 BPIFA1Q9NP55 256 aa20.53■□□□□ 0.88
CLN3-219ENST00000565778 EIF2AK3Q9NZJ5 1116 aaKnown RBP20.53■□□□□ 0.88
CLN3-219ENST00000565778 AKAP7Q9P0M2 348 aaPredicted RBP20.53■□□□□ 0.88
CLN3-219ENST00000565778 ATXN10Q9UBB4 475 aa20.53■□□□□ 0.88
CLN3-219ENST00000565778 TRHDEQ9UKU6 1024 aa20.53■□□□□ 0.88
CLN3-219ENST00000565778 KCNK6Q9Y257 313 aa20.53■□□□□ 0.88
CLN3-219ENST00000565778 SPO11Q9Y5K1 396 aa20.53■□□□□ 0.88
CLN3-219ENST00000565778 LOC285095A0A1B0GVY8 99 aa20.52■□□□□ 0.88
CLN3-219ENST00000565778 AURKAO14965 403 aa20.52■□□□□ 0.88
CLN3-219ENST00000565778 NUAK1O60285 661 aa20.52■□□□□ 0.88
CLN3-219ENST00000565778 SNX2O60749 519 aa20.52■□□□□ 0.88
CLN3-219ENST00000565778 EPOP01588 193 aa20.52■□□□□ 0.88
CLN3-219ENST00000565778 ACP5P13686 325 aa20.52■□□□□ 0.88
CLN3-219ENST00000565778 ZNF8P17098 575 aaPredicted RBP20.52■□□□□ 0.88
CLN3-219ENST00000565778 BPIP17213 487 aa20.52■□□□□ 0.88
CLN3-219ENST00000565778 SLC5A2P31639 672 aa20.52■□□□□ 0.88
CLN3-219ENST00000565778 CTNNA1P35221 906 aaKnown RBP20.52■□□□□ 0.88
CLN3-219ENST00000565778 CETN2P41208 172 aa20.52■□□□□ 0.88
CLN3-219ENST00000565778 UCNP55089 124 aa20.52■□□□□ 0.88
CLN3-219ENST00000565778 DCDC1P59894 354 aa20.52■□□□□ 0.88
CLN3-219ENST00000565778 XRCC4Q13426 336 aa20.52■□□□□ 0.88
CLN3-219ENST00000565778 NR1D2Q14995 579 aa20.52■□□□□ 0.88
CLN3-219ENST00000565778 NKAIN2Q5VXU1 208 aa20.52■□□□□ 0.88
CLN3-219ENST00000565778 KDELC1Q6UW63 502 aa20.52■□□□□ 0.88
CLN3-219ENST00000565778 SLITRK4Q8IW52 837 aa20.52■□□□□ 0.88
CLN3-219ENST00000565778 QKIQ96PU8 341 aaKnown RBP eCLIP20.52■□□□□ 0.88
CLN3-219ENST00000565778 FERMT1Q9BQL6 677 aa20.52■□□□□ 0.88
CLN3-219ENST00000565778 NUDT22Q9BRQ3 303 aa20.52■□□□□ 0.88
CLN3-219ENST00000565778 C10orf88Q9H8K7 445 aa20.52■□□□□ 0.88
CLN3-219ENST00000565778 KCNK4Q9NYG8 393 aa20.52■□□□□ 0.88
CLN3-219ENST00000565778 REXO2Q9Y3B8 237 aaKnown RBP20.52■□□□□ 0.88
CLN3-219ENST00000565778 ARHGEF17Q96PE2 2063 aaPredicted RBP20.51■□□□□ 0.87
CLN3-219ENST00000565778 EIF4E1BA6NMX2 242 aaKnown RBP20.51■□□□□ 0.87
CLN3-219ENST00000565778 BTNL10A8MVZ5 291 aa20.51■□□□□ 0.87
CLN3-219ENST00000565778 APOC4-APOC2K7ER74 178 aa20.51■□□□□ 0.87
CLN3-219ENST00000565778 EML2O95834 649 aa20.51■□□□□ 0.87
CLN3-219ENST00000565778 APOC2P02655 101 aa20.51■□□□□ 0.87
CLN3-219ENST00000565778 CTNNA2P26232 953 aa20.51■□□□□ 0.87
CLN3-219ENST00000565778 RBL1P28749 1068 aa20.51■□□□□ 0.87
CLN3-219ENST00000565778 RWDD2BP57060 319 aa20.51■□□□□ 0.87
CLN3-219ENST00000565778 TMPRSS3P57727 454 aa20.51■□□□□ 0.87
CLN3-219ENST00000565778 CLPPQ16740 277 aaPredicted RBP20.51■□□□□ 0.87
CLN3-219ENST00000565778 SIRPB2Q5JXA9 342 aa20.51■□□□□ 0.87
CLN3-219ENST00000565778 PDPK2PQ6A1A2 396 aa20.51■□□□□ 0.87
CLN3-219ENST00000565778 ZNF574Q6ZN55 896 aaPredicted RBP20.51■□□□□ 0.87
CLN3-219ENST00000565778 KIAA1328Q86T90 577 aa20.51■□□□□ 0.87
CLN3-219ENST00000565778 SFRP1Q8N474 314 aa20.51■□□□□ 0.87
CLN3-219ENST00000565778 ACRBPQ8NEB7 543 aa20.51■□□□□ 0.87
CLN3-219ENST00000565778 SLC37A2Q8TED4 501 aa20.51■□□□□ 0.87
CLN3-219ENST00000565778 GLYATL1Q969I3 302 aa20.51■□□□□ 0.87
CLN3-219ENST00000565778 AHCYL2Q96HN2 611 aaKnown RBP20.51■□□□□ 0.87
CLN3-219ENST00000565778 SLC38A3Q99624 504 aa20.51■□□□□ 0.87
CLN3-219ENST00000565778 BAG1Q99933 345 aaPredicted RBP20.51■□□□□ 0.87
CLN3-219ENST00000565778 LACRTQ9GZZ8 138 aa20.51■□□□□ 0.87
CLN3-219ENST00000565778 TRABDQ9H4I3 376 aa20.51■□□□□ 0.87
CLN3-219ENST00000565778 CPNE5Q9HCH3 593 aa20.51■□□□□ 0.87
CLN3-219ENST00000565778 TBC1D29Q9UFV1 150 aa20.51■□□□□ 0.87
CLN3-219ENST00000565778 RSPH14Q9UHP6 348 aa20.51■□□□□ 0.87
CLN3-219ENST00000565778 EFR3BQ9Y2G0 817 aa20.51■□□□□ 0.87
CLN3-219ENST00000565778 IGHV1OR21-1A0A087WYE8 117 aa20.5■□□□□ 0.87
CLN3-219ENST00000565778 CCDC66A2RUB6 948 aa20.5■□□□□ 0.87
CLN3-219ENST00000565778 ITIH1P19827 911 aa20.5■□□□□ 0.87
CLN3-219ENST00000565778 VAV2P52735 878 aa20.5■□□□□ 0.87
CLN3-219ENST00000565778 MAPK10P53779 464 aa20.5■□□□□ 0.87
CLN3-219ENST00000565778 NOMO1Q15155 1222 aa20.5■□□□□ 0.87
CLN3-219ENST00000565778 ARHGAP40Q5TG30 622 aa20.5■□□□□ 0.87
CLN3-219ENST00000565778 IYDQ6PHW0 289 aa20.5■□□□□ 0.87
CLN3-219ENST00000565778 ADGRG6Q86SQ4 1221 aa20.5■□□□□ 0.87
CLN3-219ENST00000565778 PHYKPLQ8IUZ5 450 aa20.5■□□□□ 0.87
CLN3-219ENST00000565778 IPMKQ8NFU5 416 aa20.5■□□□□ 0.87
CLN3-219ENST00000565778 OXNAD1Q96HP4 312 aaPredicted RBP20.5■□□□□ 0.87
CLN3-219ENST00000565778 MRGPRX2Q96LB1 330 aa20.5■□□□□ 0.87
CLN3-219ENST00000565778 BBC3Q96PG8 261 aaPredicted RBP20.5■□□□□ 0.87
CLN3-219ENST00000565778 UBL7Q96S82 380 aaPredicted RBP20.5■□□□□ 0.87
CLN3-219ENST00000565778 OSBPL8Q9BZF1 889 aa20.5■□□□□ 0.87
CLN3-219ENST00000565778 NFKBIL1Q9UBC1 381 aaPredicted RBP20.5■□□□□ 0.87
CLN3-219ENST00000565778 PCDHGA7Q9Y5G6 932 aa20.5■□□□□ 0.87
CLN3-219ENST00000565778 UNC13CQ8NB66 2214 aa20.5■□□□□ 0.87
CLN3-219ENST00000565778 IGHV5-10-1A0A0J9YXX1 117 aa20.49■□□□□ 0.87
CLN3-219ENST00000565778 MACROD2A1Z1Q3 448 aa20.49■□□□□ 0.87
CLN3-219ENST00000565778 NVLO15381 856 aaKnown RBP20.49■□□□□ 0.87
CLN3-219ENST00000565778 SLC2A4P14672 509 aa20.49■□□□□ 0.87
CLN3-219ENST00000565778 HMGCLP35914 325 aa20.49■□□□□ 0.87
CLN3-219ENST00000565778 CHRNA4P43681 627 aa20.49■□□□□ 0.87
CLN3-219ENST00000565778 FASLGP48023 281 aa20.49■□□□□ 0.87
CLN3-219ENST00000565778 OTUD4Q01804 1114 aaKnown RBP20.49■□□□□ 0.87
CLN3-219ENST00000565778 HHEXQ03014 270 aa20.49■□□□□ 0.87
CLN3-219ENST00000565778 MPP3Q13368 585 aa20.49■□□□□ 0.87
CLN3-219ENST00000565778 C16orf72Q14CZ0 275 aa20.49■□□□□ 0.87
CLN3-219ENST00000565778 SLC1A5Q15758 541 aa20.49■□□□□ 0.87
CLN3-219ENST00000565778 ZNF761Q86XN6 746 aaPredicted RBP20.49■□□□□ 0.87
CLN3-219ENST00000565778 RCBTB1Q8NDN9 531 aa20.49■□□□□ 0.87
CLN3-219ENST00000565778 GDAP1Q8TB36 358 aa20.49■□□□□ 0.87
CLN3-219ENST00000565778 ACTL9Q8TC94 416 aa20.49■□□□□ 0.87
CLN3-219ENST00000565778 BLOC1S5Q8TDH9 187 aa20.49■□□□□ 0.87
CLN3-219ENST00000565778 PLEKHG4BQ96PX9 1271 aa20.49■□□□□ 0.87
CLN3-219ENST00000565778 FSD1LQ9BXM9 530 aa20.49■□□□□ 0.87
CLN3-219ENST00000565778 ZMYND15Q9H091 742 aa20.49■□□□□ 0.87
CLN3-219ENST00000565778 STN1Q9H668 368 aaKnown RBP20.49■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 229.1 ms