RNA–Protein interactions for RNA: ENST00000565354.5

CLN3-217, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 759 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-217ENST00000565354 FZD2Q14332 565 aa17.13■□□□□ 0.33
CLN3-217ENST00000565354 CACTIN-AS1Q8N1I8 211 aa17.13■□□□□ 0.33
CLN3-217ENST00000565354 TTC30BQ8N4P2 665 aa17.13■□□□□ 0.33
CLN3-217ENST00000565354 BTN2A2Q8WVV5 523 aa17.13■□□□□ 0.33
CLN3-217ENST00000565354 FUBP1Q96AE4 644 aaKnown RBP17.13■□□□□ 0.33
CLN3-217ENST00000565354 ZSCAN5AQ9BUG6 496 aa17.13■□□□□ 0.33
CLN3-217ENST00000565354 EIF2B3Q9NR50 452 aaKnown RBP17.13■□□□□ 0.33
CLN3-217ENST00000565354 GPR27Q9NS67 375 aa17.13■□□□□ 0.33
CLN3-217ENST00000565354 PIH1D1Q9NWS0 290 aaKnown RBP17.13■□□□□ 0.33
CLN3-217ENST00000565354 ASIC3Q9UHC3 531 aa17.13■□□□□ 0.33
CLN3-217ENST00000565354 ARL5AQ9Y689 179 aa17.13■□□□□ 0.33
CLN3-217ENST00000565354 SDC3O75056 442 aa17.12■□□□□ 0.33
CLN3-217ENST00000565354 PPFIA2O75334 1257 aa17.12■□□□□ 0.33
CLN3-217ENST00000565354 URI1O94763 535 aaPredicted RBP17.12■□□□□ 0.33
CLN3-217ENST00000565354 SUN1O94901 812 aa17.12■□□□□ 0.33
CLN3-217ENST00000565354 ASMTLO95671 621 aa17.12■□□□□ 0.33
CLN3-217ENST00000565354 HOXC4P09017 264 aaPredicted RBP17.12■□□□□ 0.33
CLN3-217ENST00000565354 BPIP17213 487 aa17.12■□□□□ 0.33
CLN3-217ENST00000565354 JUNDP17535 347 aa17.12■□□□□ 0.33
CLN3-217ENST00000565354 TRIM23P36406 574 aa17.12■□□□□ 0.33
CLN3-217ENST00000565354 RXRGP48443 463 aa17.12■□□□□ 0.33
CLN3-217ENST00000565354 BLKP51451 505 aa17.12■□□□□ 0.33
CLN3-217ENST00000565354 DCDC1P59894 354 aa17.12■□□□□ 0.33
CLN3-217ENST00000565354 CXADRP78310 365 aa17.12■□□□□ 0.33
CLN3-217ENST00000565354 POU6F1Q14863 301 aa17.12■□□□□ 0.33
CLN3-217ENST00000565354 KCTD19Q17RG1 926 aaPredicted RBP17.12■□□□□ 0.33
CLN3-217ENST00000565354 TBC1D25Q3MII6 688 aa17.12■□□□□ 0.33
CLN3-217ENST00000565354 TPRG1LQ5T0D9 272 aa17.12■□□□□ 0.33
CLN3-217ENST00000565354 HENMT1Q5T8I9 393 aaKnown RBP17.12■□□□□ 0.33
CLN3-217ENST00000565354 DENND5AQ6IQ26 1287 aa17.12■□□□□ 0.33
CLN3-217ENST00000565354 DOK6Q6PKX4 331 aa17.12■□□□□ 0.33
CLN3-217ENST00000565354 ADAMTSL4Q6UY14 1074 aa17.12■□□□□ 0.33
CLN3-217ENST00000565354 RD3Q7Z3Z2 195 aa17.12■□□□□ 0.33
CLN3-217ENST00000565354 HID1Q8IV36 788 aa17.12■□□□□ 0.33
CLN3-217ENST00000565354 SPACA3Q8IXA5 215 aa17.12■□□□□ 0.33
CLN3-217ENST00000565354 PHACTR4Q8IZ21 702 aa17.12■□□□□ 0.33
CLN3-217ENST00000565354 PELI3Q8N2H9 469 aa17.12■□□□□ 0.33
CLN3-217ENST00000565354 GPR26Q8NDV2 337 aa17.12■□□□□ 0.33
CLN3-217ENST00000565354 OR56A4Q8NGH8 313 aa17.12■□□□□ 0.33
CLN3-217ENST00000565354 EID2BQ96D98 161 aa17.12■□□□□ 0.33
CLN3-217ENST00000565354 AGAP2Q99490 1192 aa17.12■□□□□ 0.33
CLN3-217ENST00000565354 SLC13A1Q9BZW2 595 aa17.12■□□□□ 0.33
CLN3-217ENST00000565354 IL17CQ9P0M4 197 aa17.12■□□□□ 0.33
CLN3-217ENST00000565354 APOBEC3BQ9UH17 382 aaKnown RBP17.12■□□□□ 0.33
CLN3-217ENST00000565354 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP17.11■□□□□ 0.33
CLN3-217ENST00000565354 ERVH48-1M5A8F1 160 aa17.11■□□□□ 0.33
CLN3-217ENST00000565354 AP3B1O00203 1094 aa17.11■□□□□ 0.33
CLN3-217ENST00000565354 RASGRP1O95267 797 aa17.11■□□□□ 0.33
CLN3-217ENST00000565354 TNFP01375 233 aa17.11■□□□□ 0.33
CLN3-217ENST00000565354 CSF2P04141 144 aa17.11■□□□□ 0.33
CLN3-217ENST00000565354 CTSEP14091 401 aa17.11■□□□□ 0.33
CLN3-217ENST00000565354 CKMT2P17540 419 aa17.11■□□□□ 0.33
CLN3-217ENST00000565354 TPSB2P20231 275 aa17.11■□□□□ 0.33
CLN3-217ENST00000565354 TMPRSS15P98073 1019 aa17.11■□□□□ 0.33
CLN3-217ENST00000565354 DR1Q01658 176 aa17.11■□□□□ 0.33
CLN3-217ENST00000565354 CKAP4Q07065 602 aaKnown RBP17.11■□□□□ 0.33
CLN3-217ENST00000565354 BNIP3Q12983 259 aa17.11■□□□□ 0.33
CLN3-217ENST00000565354 LAMB3Q13751 1172 aa17.11■□□□□ 0.33
CLN3-217ENST00000565354 TPSAB1Q15661 275 aa17.11■□□□□ 0.33
CLN3-217ENST00000565354 TRAM1L1Q8N609 369 aa17.11■□□□□ 0.33
CLN3-217ENST00000565354 OR4K2Q8NGD2 314 aa17.11■□□□□ 0.33
CLN3-217ENST00000565354 HIC2Q96JB3 615 aa17.11■□□□□ 0.33
CLN3-217ENST00000565354 PLEKHG4BQ96PX9 1271 aa17.11■□□□□ 0.33
CLN3-217ENST00000565354 LGR4Q9BXB1 951 aa17.11■□□□□ 0.33
CLN3-217ENST00000565354 TEX101Q9BY14 249 aa17.11■□□□□ 0.33
CLN3-217ENST00000565354 SUDS3Q9H7L9 328 aaPredicted RBP17.11■□□□□ 0.33
CLN3-217ENST00000565354 NFKBIL1Q9UBC1 381 aaPredicted RBP17.11■□□□□ 0.33
CLN3-217ENST00000565354 PCYOX1Q9UHG3 505 aa17.11■□□□□ 0.33
CLN3-217ENST00000565354 CLCA2Q9UQC9 943 aa17.11■□□□□ 0.33
CLN3-217ENST00000565354 PIEZO2Q9H5I5 2752 aa17.1■□□□□ 0.33
CLN3-217ENST00000565354 GLYATL1P3A0A0U1RQE8 302 aa17.1■□□□□ 0.33
CLN3-217ENST00000565354 NME1P15531 152 aaKnown RBP17.1■□□□□ 0.33
CLN3-217ENST00000565354 ADCY8P40145 1251 aa17.1■□□□□ 0.33
CLN3-217ENST00000565354 HADHAP40939 763 aa17.1■□□□□ 0.33
CLN3-217ENST00000565354 SRP54P61011 504 aaKnown RBP17.1■□□□□ 0.33
CLN3-217ENST00000565354 CDK16Q00536 496 aa17.1■□□□□ 0.33
CLN3-217ENST00000565354 EIF2B5Q13144 721 aaKnown RBP17.1■□□□□ 0.33
CLN3-217ENST00000565354 PDPK2PQ6A1A2 396 aa17.1■□□□□ 0.33
CLN3-217ENST00000565354 FAM151BQ6UXP7 276 aa17.1■□□□□ 0.33
CLN3-217ENST00000565354 SYDE1Q6ZW31 735 aaPredicted RBP17.1■□□□□ 0.33
CLN3-217ENST00000565354 KANSL1Q7Z3B3 1105 aa17.1■□□□□ 0.33
CLN3-217ENST00000565354 DCBLD1Q8N8Z6 715 aa17.1■□□□□ 0.33
CLN3-217ENST00000565354 GDAP1Q8TB36 358 aa17.1■□□□□ 0.33
CLN3-217ENST00000565354 TSACCQ96A04 125 aaPredicted RBP17.1■□□□□ 0.33
CLN3-217ENST00000565354 KRT12Q99456 494 aa17.1■□□□□ 0.33
CLN3-217ENST00000565354 CASS4Q9NQ75 786 aa17.1■□□□□ 0.33
CLN3-217ENST00000565354 SPASTQ9UBP0 616 aa17.1■□□□□ 0.33
CLN3-217ENST00000565354 DOLKQ9UPQ8 538 aa17.1■□□□□ 0.33
CLN3-217ENST00000565354 HEATR9A2RTY3 570 aa17.09■□□□□ 0.33
CLN3-217ENST00000565354 TMEM202A6NGA9 273 aa17.09■□□□□ 0.33
CLN3-217ENST00000565354 CYSRT1A8MQ03 144 aa17.09■□□□□ 0.33
CLN3-217ENST00000565354 FADS2P1A8MWK0 482 aa17.09■□□□□ 0.33
CLN3-217ENST00000565354 TNFRSF10CO14798 259 aa17.09■□□□□ 0.33
CLN3-217ENST00000565354 PIAS2O75928 621 aa17.09■□□□□ 0.33
CLN3-217ENST00000565354 SLC25A14O95258 325 aaPredicted RBP17.09■□□□□ 0.33
CLN3-217ENST00000565354 SOD1P00441 154 aa17.09■□□□□ 0.33
CLN3-217ENST00000565354 GRIA1P42261 906 aa17.09■□□□□ 0.33
CLN3-217ENST00000565354 SESN2P58004 480 aaPredicted RBP17.09■□□□□ 0.33
CLN3-217ENST00000565354 INSM1Q01101 510 aaPredicted RBP17.09■□□□□ 0.33
CLN3-217ENST00000565354 ITGA9Q13797 1035 aa17.09■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 72.3 ms