RNA–Protein interactions for RNA: ENST00000562754.1

VPS4A-202, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 2

Gene VPS4A, Length 633 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-202ENST00000562754 SERAC1Q96JX3 654 aa16.45■□□□□ 0.22
VPS4A-202ENST00000562754 SLC6A18Q96N87 628 aa16.45■□□□□ 0.22
VPS4A-202ENST00000562754 CYTH2Q99418 400 aa16.45■□□□□ 0.22
VPS4A-202ENST00000562754 ARFGAP3Q9NP61 516 aa16.45■□□□□ 0.22
VPS4A-202ENST00000562754 ZFATQ9P243 1243 aa16.45■□□□□ 0.22
VPS4A-202ENST00000562754 FBXO5Q9UKT4 447 aa16.45■□□□□ 0.22
VPS4A-202ENST00000562754 PCDHGA2Q9Y5H1 932 aa16.45■□□□□ 0.22
VPS4A-202ENST00000562754 OAS3Q9Y6K5 1087 aaKnown RBP16.45■□□□□ 0.22
VPS4A-202ENST00000562754 FPGTO14772 594 aa16.44■□□□□ 0.22
VPS4A-202ENST00000562754 S1PR4O95977 384 aa16.44■□□□□ 0.22
VPS4A-202ENST00000562754 PYGLP06737 847 aa16.44■□□□□ 0.22
VPS4A-202ENST00000562754 NUDT17P0C025 328 aa16.44■□□□□ 0.22
VPS4A-202ENST00000562754 ACRV1P26436 265 aa16.44■□□□□ 0.22
VPS4A-202ENST00000562754 MAOBP27338 520 aa16.44■□□□□ 0.22
VPS4A-202ENST00000562754 GABRB3P28472 473 aa16.44■□□□□ 0.22
VPS4A-202ENST00000562754 CNR2P34972 360 aa16.44■□□□□ 0.22
VPS4A-202ENST00000562754 TRIM23P36406 574 aa16.44■□□□□ 0.22
VPS4A-202ENST00000562754 CDK3Q00526 305 aa16.44■□□□□ 0.22
VPS4A-202ENST00000562754 B4GALNT1Q00973 533 aa16.44■□□□□ 0.22
VPS4A-202ENST00000562754 ZNF789Q5FWF6 425 aa16.44■□□□□ 0.22
VPS4A-202ENST00000562754 AARS2Q5JTZ9 985 aaKnown RBP16.44■□□□□ 0.22
VPS4A-202ENST00000562754 ZNF648Q5T619 568 aaPredicted RBP16.44■□□□□ 0.22
VPS4A-202ENST00000562754 CTAGE3PQ8IX95 158 aa16.44■□□□□ 0.22
VPS4A-202ENST00000562754 DDHD1Q8NEL9 900 aa16.44■□□□□ 0.22
VPS4A-202ENST00000562754 OR2W6PQ8NHA6 318 aa16.44■□□□□ 0.22
VPS4A-202ENST00000562754 C1orf216Q8TAB5 229 aa16.44■□□□□ 0.22
VPS4A-202ENST00000562754 DNASE2BQ8WZ79 361 aa16.44■□□□□ 0.22
VPS4A-202ENST00000562754 COX14Q96I36 57 aa16.44■□□□□ 0.22
VPS4A-202ENST00000562754 BMFQ96LC9 184 aa16.44■□□□□ 0.22
VPS4A-202ENST00000562754 BOCQ9BWV1 1114 aa16.44■□□□□ 0.22
VPS4A-202ENST00000562754 LGR4Q9BXB1 951 aa16.44■□□□□ 0.22
VPS4A-202ENST00000562754 TEX101Q9BY14 249 aa16.44■□□□□ 0.22
VPS4A-202ENST00000562754 WDR26Q9H7D7 661 aa16.44■□□□□ 0.22
VPS4A-202ENST00000562754 FBXO6Q9NRD1 293 aaPredicted RBP16.44■□□□□ 0.22
VPS4A-202ENST00000562754 OR1A2Q9Y585 309 aa16.44■□□□□ 0.22
VPS4A-202ENST00000562754 SDK1Q7Z5N4 2213 aa16.43■□□□□ 0.22
VPS4A-202ENST00000562754 IGLV3-16A0A075B6K0 115 aa16.43■□□□□ 0.22
VPS4A-202ENST00000562754 OR1I1O60431 355 aa16.43■□□□□ 0.22
VPS4A-202ENST00000562754 MTX2O75431 263 aa16.43■□□□□ 0.22
VPS4A-202ENST00000562754 GCAP28676 217 aa16.43■□□□□ 0.22
VPS4A-202ENST00000562754 ABCG1P45844 678 aa16.43■□□□□ 0.22
VPS4A-202ENST00000562754 PFN3P60673 137 aa16.43■□□□□ 0.22
VPS4A-202ENST00000562754 NAB1Q13506 487 aa16.43■□□□□ 0.22
VPS4A-202ENST00000562754 KLHL38Q2WGJ6 581 aa16.43■□□□□ 0.22
VPS4A-202ENST00000562754 TPRG1LQ5T0D9 272 aa16.43■□□□□ 0.22
VPS4A-202ENST00000562754 KYAT3Q6YP21 454 aaKnown RBP16.43■□□□□ 0.22
VPS4A-202ENST00000562754 CERS6Q6ZMG9 384 aa16.43■□□□□ 0.22
VPS4A-202ENST00000562754 KIAA0408Q6ZU52 694 aa16.43■□□□□ 0.22
VPS4A-202ENST00000562754 CEP68Q76N32 757 aa16.43■□□□□ 0.22
VPS4A-202ENST00000562754 ABI3BPQ7Z7G0 1075 aa16.43■□□□□ 0.22
VPS4A-202ENST00000562754 SLC26A11Q86WA9 606 aa16.43■□□□□ 0.22
VPS4A-202ENST00000562754 PHYKPLQ8IUZ5 450 aa16.43■□□□□ 0.22
VPS4A-202ENST00000562754 NAT14Q8WUY8 206 aa16.43■□□□□ 0.22
VPS4A-202ENST00000562754 ANKRD7Q92527 254 aa16.43■□□□□ 0.22
VPS4A-202ENST00000562754 LPGAT1Q92604 370 aa16.43■□□□□ 0.22
VPS4A-202ENST00000562754 CDKL2Q92772 493 aa16.43■□□□□ 0.22
VPS4A-202ENST00000562754 HIC2Q96JB3 615 aa16.43■□□□□ 0.22
VPS4A-202ENST00000562754 MCMBPQ9BTE3 642 aa16.43■□□□□ 0.22
VPS4A-202ENST00000562754 APOOQ9BUR5 198 aa16.43■□□□□ 0.22
VPS4A-202ENST00000562754 ZDHHC3Q9NYG2 299 aa16.43■□□□□ 0.22
VPS4A-202ENST00000562754 VPS18Q9P253 973 aa16.43■□□□□ 0.22
VPS4A-202ENST00000562754 HS3ST3A1Q9Y663 406 aa16.43■□□□□ 0.22
VPS4A-202ENST00000562754 TP53BP1Q12888 1972 aaPredicted RBP16.43■□□□□ 0.22
VPS4A-202ENST00000562754 CACNA1HO95180 2353 aa16.43■□□□□ 0.22
VPS4A-202ENST00000562754 LRP4O75096 1905 aa16.43■□□□□ 0.22
VPS4A-202ENST00000562754 PIKFYVEQ9Y2I7 2098 aa16.42■□□□□ 0.22
VPS4A-202ENST00000562754 EXOC1LA0A1B0GW35 172 aa16.42■□□□□ 0.22
VPS4A-202ENST00000562754 A6NNZ2 444 aa16.42■□□□□ 0.22
VPS4A-202ENST00000562754 FAM155BO75949 473 aa16.42■□□□□ 0.22
VPS4A-202ENST00000562754 SLC25A14O95258 325 aaPredicted RBP16.42■□□□□ 0.22
VPS4A-202ENST00000562754 WNT1P04628 370 aa16.42■□□□□ 0.22
VPS4A-202ENST00000562754 MYCLP1P12525 358 aaPredicted RBP16.42■□□□□ 0.22
VPS4A-202ENST00000562754 ITPKAP23677 461 aa16.42■□□□□ 0.22
VPS4A-202ENST00000562754 PMLP29590 882 aa16.42■□□□□ 0.22
VPS4A-202ENST00000562754 LEPRP48357 1165 aaKnown RBP16.42■□□□□ 0.22
VPS4A-202ENST00000562754 DHPSP49366 369 aaPredicted RBP16.42■□□□□ 0.22
VPS4A-202ENST00000562754 TTPAP49638 278 aa16.42■□□□□ 0.22
VPS4A-202ENST00000562754 KIAA1024LP59773 190 aa16.42■□□□□ 0.22
VPS4A-202ENST00000562754 ITIH4Q14624 930 aa16.42■□□□□ 0.22
VPS4A-202ENST00000562754 STAT4Q14765 748 aa16.42■□□□□ 0.22
VPS4A-202ENST00000562754 LYPLAL1Q5VWZ2 237 aa16.42■□□□□ 0.22
VPS4A-202ENST00000562754 LYSMD4Q5XG99 296 aa16.42■□□□□ 0.22
VPS4A-202ENST00000562754 CNSTQ6PJW8 725 aa16.42■□□□□ 0.22
VPS4A-202ENST00000562754 PACS1Q6VY07 963 aa16.42■□□□□ 0.22
VPS4A-202ENST00000562754 STRA8Q7Z7C7 330 aa16.42■□□□□ 0.22
VPS4A-202ENST00000562754 GALNT7Q86SF2 657 aa16.42■□□□□ 0.22
VPS4A-202ENST00000562754 SDCCAG8Q86SQ7 713 aaPredicted RBP16.42■□□□□ 0.22
VPS4A-202ENST00000562754 LRRC6Q86X45 466 aa16.42■□□□□ 0.22
VPS4A-202ENST00000562754 OR13H1Q8NG92 308 aa16.42■□□□□ 0.22
VPS4A-202ENST00000562754 GDAP1Q8TB36 358 aa16.42■□□□□ 0.22
VPS4A-202ENST00000562754 SLC44A1Q8WWI5 657 aa16.42■□□□□ 0.22
VPS4A-202ENST00000562754 SCG3Q8WXD2 468 aaKnown RBP16.42■□□□□ 0.22
VPS4A-202ENST00000562754 MRRFQ96E11 262 aaKnown RBP16.42■□□□□ 0.22
VPS4A-202ENST00000562754 ZC3H10Q96K80 434 aaKnown RBP16.42■□□□□ 0.22
VPS4A-202ENST00000562754 TCF12Q99081 682 aa16.42■□□□□ 0.22
VPS4A-202ENST00000562754 PAFAH2Q99487 392 aa16.42■□□□□ 0.22
VPS4A-202ENST00000562754 COPS8Q99627 209 aa16.42■□□□□ 0.22
VPS4A-202ENST00000562754 DHRS4Q9BTZ2 278 aa16.42■□□□□ 0.22
VPS4A-202ENST00000562754 MIR1-1HGQ9H1L0 117 aa16.42■□□□□ 0.22
VPS4A-202ENST00000562754 TM9SF3Q9HD45 589 aa16.42■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms