RNA–Protein interactions for RNA: ENST00000560260.5

SNX1-210, Transcript of sorting nexin 1, humanhuman

TSL 1 (best)

Gene SNX1, Length 1,326 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-210ENST00000560260 A0A1B0GTQ1 180 aa21.58■■□□□ 1.05
SNX1-210ENST00000560260 AGAP14A8MT82 685 aa21.58■■□□□ 1.05
SNX1-210ENST00000560260 DRG2P55039 364 aaKnown RBP21.58■■□□□ 1.05
SNX1-210ENST00000560260 PLTPP55058 493 aa21.58■■□□□ 1.05
SNX1-210ENST00000560260 CALCOCO2Q13137 446 aa21.58■■□□□ 1.05
SNX1-210ENST00000560260 SMAD1Q15797 465 aaKnown RBP21.58■■□□□ 1.05
SNX1-210ENST00000560260 HIF1AQ16665 826 aa21.58■■□□□ 1.05
SNX1-210ENST00000560260 GLE1Q53GS7 698 aaKnown RBP21.58■■□□□ 1.05
SNX1-210ENST00000560260 PSAPL1Q6NUJ1 521 aa21.58■■□□□ 1.05
SNX1-210ENST00000560260 CASC4Q6P4E1 433 aa21.58■■□□□ 1.05
SNX1-210ENST00000560260 IL27RAQ6UWB1 636 aa21.58■■□□□ 1.05
SNX1-210ENST00000560260 NLRP9Q7RTR0 991 aa21.58■■□□□ 1.05
SNX1-210ENST00000560260 FBXO25Q8TCJ0 367 aa21.58■■□□□ 1.05
SNX1-210ENST00000560260 FAM122AQ96E09 287 aa21.58■■□□□ 1.05
SNX1-210ENST00000560260 PLAC1Q9HBJ0 212 aa21.58■■□□□ 1.05
SNX1-210ENST00000560260 DNAJC28Q9NX36 388 aa21.58■■□□□ 1.05
SNX1-210ENST00000560260 KLQ9UEF7 1012 aa21.58■■□□□ 1.05
SNX1-210ENST00000560260 SLC17A4Q9Y2C5 497 aa21.58■■□□□ 1.05
SNX1-210ENST00000560260 TRBV5-4A0A0C4DH59 114 aa21.57■■□□□ 1.04
SNX1-210ENST00000560260 FAM237BA0A1B0GVD1 139 aa21.57■■□□□ 1.04
SNX1-210ENST00000560260 E7ESA3 106 aa21.57■■□□□ 1.04
SNX1-210ENST00000560260 CER1O95813 267 aa21.57■■□□□ 1.04
SNX1-210ENST00000560260 GOT2P00505 430 aaKnown RBP21.57■■□□□ 1.04
SNX1-210ENST00000560260 NME1P15531 152 aaKnown RBP21.57■■□□□ 1.04
SNX1-210ENST00000560260 HTR1BP28222 390 aa21.57■■□□□ 1.04
SNX1-210ENST00000560260 RXRGP48443 463 aa21.57■■□□□ 1.04
SNX1-210ENST00000560260 ARL4CP56559 192 aa21.57■■□□□ 1.04
SNX1-210ENST00000560260 SRP54P61011 504 aaKnown RBP21.57■■□□□ 1.04
SNX1-210ENST00000560260 ITGA9Q13797 1035 aa21.57■■□□□ 1.04
SNX1-210ENST00000560260 FASTKD3Q14CZ7 662 aaKnown RBP21.57■■□□□ 1.04
SNX1-210ENST00000560260 DNAJC21Q5F1R6 531 aaKnown RBP21.57■■□□□ 1.04
SNX1-210ENST00000560260 GPRC6AQ5T6X5 926 aa21.57■■□□□ 1.04
SNX1-210ENST00000560260 ADGRG6Q86SQ4 1221 aa21.57■■□□□ 1.04
SNX1-210ENST00000560260 PHYKPLQ8IUZ5 450 aa21.57■■□□□ 1.04
SNX1-210ENST00000560260 PIANPQ8IYJ0 282 aa21.57■■□□□ 1.04
SNX1-210ENST00000560260 PHACTR4Q8IZ21 702 aa21.57■■□□□ 1.04
SNX1-210ENST00000560260 DDHD1Q8NEL9 900 aa21.57■■□□□ 1.04
SNX1-210ENST00000560260 ZNF669Q96BR6 464 aaPredicted RBP21.57■■□□□ 1.04
SNX1-210ENST00000560260 EPB41L5Q9HCM4 733 aa21.57■■□□□ 1.04
SNX1-210ENST00000560260 ZDHHC18Q9NUE0 388 aa21.57■■□□□ 1.04
SNX1-210ENST00000560260 SAMD15Q9P1V8 674 aa21.57■■□□□ 1.04
SNX1-210ENST00000560260 ATXN10Q9UBB4 475 aa21.57■■□□□ 1.04
SNX1-210ENST00000560260 MAD1L1Q9Y6D9 718 aa21.57■■□□□ 1.04
SNX1-210ENST00000560260 ZCWPW2A0A1B0GU75 182 aa21.56■■□□□ 1.04
SNX1-210ENST00000560260 PRSS38A1L453 326 aa21.56■■□□□ 1.04
SNX1-210ENST00000560260 NDC80O14777 642 aa21.56■■□□□ 1.04
SNX1-210ENST00000560260 SDC3O75056 442 aa21.56■■□□□ 1.04
SNX1-210ENST00000560260 SLC25A14O95258 325 aaPredicted RBP21.56■■□□□ 1.04
SNX1-210ENST00000560260 CSF2P04141 144 aa21.56■■□□□ 1.04
SNX1-210ENST00000560260 ITGALP20701 1170 aa21.56■■□□□ 1.04
SNX1-210ENST00000560260 KELP23276 732 aa21.56■■□□□ 1.04
SNX1-210ENST00000560260 EPHA8P29322 1005 aaPredicted RBP21.56■■□□□ 1.04
SNX1-210ENST00000560260 BNIP3Q12983 259 aa21.56■■□□□ 1.04
SNX1-210ENST00000560260 SEMA3AQ14563 771 aa21.56■■□□□ 1.04
SNX1-210ENST00000560260 ANKRD20A4Q4UJ75 823 aa21.56■■□□□ 1.04
SNX1-210ENST00000560260 ZRANB3Q5FWF4 1079 aa21.56■■□□□ 1.04
SNX1-210ENST00000560260 HP1BP3Q5SSJ5 553 aaPredicted RBP21.56■■□□□ 1.04
SNX1-210ENST00000560260 ARMC3Q5W041 872 aa21.56■■□□□ 1.04
SNX1-210ENST00000560260 AFTPHQ6ULP2 937 aa21.56■■□□□ 1.04
SNX1-210ENST00000560260 MARK2Q7KZI7 788 aaKnown RBP21.56■■□□□ 1.04
SNX1-210ENST00000560260 SNX20Q7Z614 316 aa21.56■■□□□ 1.04
SNX1-210ENST00000560260 TMEM135Q86UB9 458 aa21.56■■□□□ 1.04
SNX1-210ENST00000560260 HID1Q8IV36 788 aa21.56■■□□□ 1.04
SNX1-210ENST00000560260 KIAA2013Q8IYS2 634 aa21.56■■□□□ 1.04
SNX1-210ENST00000560260 PDIK1LQ8N165 341 aa21.56■■□□□ 1.04
SNX1-210ENST00000560260 OXR1Q8N573 874 aa21.56■■□□□ 1.04
SNX1-210ENST00000560260 STAMBPL1Q96FJ0 436 aa21.56■■□□□ 1.04
SNX1-210ENST00000560260 DNAAF2Q9NVR5 837 aaKnown RBP21.56■■□□□ 1.04
SNX1-210ENST00000560260 IL1RAPL1Q9NZN1 696 aa21.56■■□□□ 1.04
SNX1-210ENST00000560260 SUFUQ9UMX1 484 aa21.56■■□□□ 1.04
SNX1-210ENST00000560260 CHMP2BQ9UQN3 213 aa21.56■■□□□ 1.04
SNX1-210ENST00000560260 TEX264Q9Y6I9 313 aa21.56■■□□□ 1.04
SNX1-210ENST00000560260 SLC30A1Q9Y6M5 507 aa21.56■■□□□ 1.04
SNX1-210ENST00000560260 DMXL1Q9Y485 3027 aa21.56■■□□□ 1.04
SNX1-210ENST00000560260 TNFRSF10CO14798 259 aa21.55■■□□□ 1.04
SNX1-210ENST00000560260 DNAJC6O75061 913 aa21.55■■□□□ 1.04
SNX1-210ENST00000560260 CELA2BP08218 269 aaPredicted RBP21.55■■□□□ 1.04
SNX1-210ENST00000560260 RHOXF2BP0C7M4 288 aa21.55■■□□□ 1.04
SNX1-210ENST00000560260 JUNDP17535 347 aa21.55■■□□□ 1.04
SNX1-210ENST00000560260 ELK3P41970 407 aa21.55■■□□□ 1.04
SNX1-210ENST00000560260 ARCN1P48444 511 aaKnown RBP21.55■■□□□ 1.04
SNX1-210ENST00000560260 CCT8P50990 548 aa21.55■■□□□ 1.04
SNX1-210ENST00000560260 HK3P52790 923 aa21.55■■□□□ 1.04
SNX1-210ENST00000560260 ATXN3P54252 364 aaPredicted RBP21.55■■□□□ 1.04
SNX1-210ENST00000560260 B4GALNT1Q00973 533 aa21.55■■□□□ 1.04
SNX1-210ENST00000560260 CACNG1Q06432 222 aa21.55■■□□□ 1.04
SNX1-210ENST00000560260 CBLBQ13191 982 aa21.55■■□□□ 1.04
SNX1-210ENST00000560260 KIAA0930Q6ICG6 404 aaPredicted RBP21.55■■□□□ 1.04
SNX1-210ENST00000560260 KANSL1Q7Z3B3 1105 aa21.55■■□□□ 1.04
SNX1-210ENST00000560260 NXPE1Q8N323 547 aa21.55■■□□□ 1.04
SNX1-210ENST00000560260 NAT14Q8WUY8 206 aa21.55■■□□□ 1.04
SNX1-210ENST00000560260 SCARF2Q96GP6 870 aaPredicted RBP21.55■■□□□ 1.04
SNX1-210ENST00000560260 EBNA1BP2Q99848 306 aaKnown RBP21.55■■□□□ 1.04
SNX1-210ENST00000560260 RHOXF2Q9BQY4 288 aa21.55■■□□□ 1.04
SNX1-210ENST00000560260 LRRC61Q9BV99 259 aa21.55■■□□□ 1.04
SNX1-210ENST00000560260 OR2AG1Q9H205 316 aa21.55■■□□□ 1.04
SNX1-210ENST00000560260 CYP4F12Q9HCS2 524 aa21.55■■□□□ 1.04
SNX1-210ENST00000560260 TMEM9BQ9NQ34 198 aa21.55■■□□□ 1.04
SNX1-210ENST00000560260 UCKL1Q9NWZ5 548 aa21.55■■□□□ 1.04
SNX1-210ENST00000560260 MARCH4Q9P2E8 410 aaPredicted RBP21.55■■□□□ 1.04
Retrieved 100 of 20,778 RNA–protein pairs in 57.1 ms