RNA–Protein interactions for RNA: ENST00000559119.1

VPS13C-208, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 738 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-208ENST00000559119 TCERG1O14776 1098 aaKnown RBP4.14□□□□□ -1.75
VPS13C-208ENST00000559119 IFIT1P09914 478 aaKnown RBP4.14□□□□□ -1.75
VPS13C-208ENST00000559119 NR2F2P24468 414 aa4.14□□□□□ -1.75
VPS13C-208ENST00000559119 CSRP3P50461 194 aa4.14□□□□□ -1.75
VPS13C-208ENST00000559119 MAD2L1Q13257 205 aaPredicted RBP4.14□□□□□ -1.75
VPS13C-208ENST00000559119 DRAP1Q14919 205 aaPredicted RBP4.14□□□□□ -1.75
VPS13C-208ENST00000559119 SUSD1Q6UWL2 747 aa4.14□□□□□ -1.75
VPS13C-208ENST00000559119 ANO5Q75V66 913 aa4.14□□□□□ -1.75
VPS13C-208ENST00000559119 PIWIL4Q7Z3Z4 852 aaKnown RBP4.14□□□□□ -1.75
VPS13C-208ENST00000559119 NRROSQ86YC3 692 aa4.14□□□□□ -1.75
VPS13C-208ENST00000559119 ZNF440Q8IYI8 595 aa4.14□□□□□ -1.75
VPS13C-208ENST00000559119 SLC44A1Q8WWI5 657 aa4.14□□□□□ -1.75
VPS13C-208ENST00000559119 TRIM63Q969Q1 353 aa4.14□□□□□ -1.75
VPS13C-208ENST00000559119 KIF1BPQ96EK5 621 aa4.14□□□□□ -1.75
VPS13C-208ENST00000559119 POM121L2Q96KW2 1035 aa4.14□□□□□ -1.75
VPS13C-208ENST00000559119 PCGF1Q9BSM1 259 aa4.14□□□□□ -1.75
VPS13C-208ENST00000559119 RIC8AQ9NPQ8 531 aa4.14□□□□□ -1.75
VPS13C-208ENST00000559119 SLC25A10Q9UBX3 287 aaPredicted RBP4.14□□□□□ -1.75
VPS13C-208ENST00000559119 ACAD8Q9UKU7 415 aa4.14□□□□□ -1.75
VPS13C-208ENST00000559119 SORBS2O94875 1100 aaKnown RBP4.13□□□□□ -1.75
VPS13C-208ENST00000559119 DPEP1P16444 411 aa4.13□□□□□ -1.75
VPS13C-208ENST00000559119 CDAP32320 146 aa4.13□□□□□ -1.75
VPS13C-208ENST00000559119 UBA7P41226 1012 aa4.13□□□□□ -1.75
VPS13C-208ENST00000559119 SPINK14Q6IE38 97 aa4.13□□□□□ -1.75
VPS13C-208ENST00000559119 RDM1Q8NG50 284 aa4.13□□□□□ -1.75
VPS13C-208ENST00000559119 KLHL29Q96CT2 875 aa4.13□□□□□ -1.75
VPS13C-208ENST00000559119 SENP5Q96HI0 755 aaPredicted RBP4.13□□□□□ -1.75
VPS13C-208ENST00000559119 ZSCAN31Q96LW9 406 aaPredicted RBP4.13□□□□□ -1.75
VPS13C-208ENST00000559119 TRIM51Q9BSJ1 452 aa4.13□□□□□ -1.75
VPS13C-208ENST00000559119 USP44Q9H0E7 712 aa4.13□□□□□ -1.75
VPS13C-208ENST00000559119 ZBTB20Q9HC78 741 aaPredicted RBP4.13□□□□□ -1.75
VPS13C-208ENST00000559119 MPP6Q9NZW5 540 aa4.13□□□□□ -1.75
VPS13C-208ENST00000559119 CACNG5Q9UF02 275 aa4.13□□□□□ -1.75
VPS13C-208ENST00000559119 RASAL2Q9UJF2 1139 aa4.13□□□□□ -1.75
VPS13C-208ENST00000559119 KIAA1210Q9ULL0 1709 aa4.12□□□□□ -1.75
VPS13C-208ENST00000559119 A0A087X002 238 aa4.12□□□□□ -1.75
VPS13C-208ENST00000559119 A6NL46 340 aa4.12□□□□□ -1.75
VPS13C-208ENST00000559119 LRRC53A6NM62 1247 aa4.12□□□□□ -1.75
VPS13C-208ENST00000559119 H7C423 109 aa4.12□□□□□ -1.75
VPS13C-208ENST00000559119 TNPO2O14787 897 aaKnown RBP4.12□□□□□ -1.75
VPS13C-208ENST00000559119 ANKRD28O15084 1053 aa4.12□□□□□ -1.75
VPS13C-208ENST00000559119 KCNN4O15554 427 aa4.12□□□□□ -1.75
VPS13C-208ENST00000559119 MBTD1Q05BQ5 628 aa4.12□□□□□ -1.75
VPS13C-208ENST00000559119 SPOCK1Q08629 439 aa4.12□□□□□ -1.75
VPS13C-208ENST00000559119 CAMK1Q14012 370 aa4.12□□□□□ -1.75
VPS13C-208ENST00000559119 COL28A1Q2UY09 1125 aa4.12□□□□□ -1.75
VPS13C-208ENST00000559119 KIAA1644Q3SXP7 199 aa4.12□□□□□ -1.75
VPS13C-208ENST00000559119 SLC9B1Q4ZJI4 515 aa4.12□□□□□ -1.75
VPS13C-208ENST00000559119 ASPRV1Q53RT3 343 aa4.12□□□□□ -1.75
VPS13C-208ENST00000559119 NAA35Q5VZE5 725 aa4.12□□□□□ -1.75
VPS13C-208ENST00000559119 P2RY8Q86VZ1 359 aa4.12□□□□□ -1.75
VPS13C-208ENST00000559119 LONP2Q86WA8 852 aa4.12□□□□□ -1.75
VPS13C-208ENST00000559119 CCDC13Q8IYE1 715 aa4.12□□□□□ -1.75
VPS13C-208ENST00000559119 ANKRD52Q8NB46 1076 aa4.12□□□□□ -1.75
VPS13C-208ENST00000559119 FAM222BQ8WU58 562 aa4.12□□□□□ -1.75
VPS13C-208ENST00000559119 HARBI1Q96MB7 349 aa4.12□□□□□ -1.75
VPS13C-208ENST00000559119 ACOX2Q99424 681 aa4.12□□□□□ -1.75
VPS13C-208ENST00000559119 PPP1R14DQ9NXH3 145 aa4.12□□□□□ -1.75
VPS13C-208ENST00000559119 ANKRD66B4E2M5 251 aa4.11□□□□□ -1.75
VPS13C-208ENST00000559119 TSPAN4O14817 238 aa4.11□□□□□ -1.75
VPS13C-208ENST00000559119 BUD23O43709 281 aaKnown RBP4.11□□□□□ -1.75
VPS13C-208ENST00000559119 TSHBP01222 138 aa4.11□□□□□ -1.75
VPS13C-208ENST00000559119 GNAZP19086 355 aa4.11□□□□□ -1.75
VPS13C-208ENST00000559119 MSH3P20585 1137 aa4.11□□□□□ -1.75
VPS13C-208ENST00000559119 MCCP23508 829 aa4.11□□□□□ -1.75
VPS13C-208ENST00000559119 HOXC9P31274 260 aa4.11□□□□□ -1.75
VPS13C-208ENST00000559119 ELF1P32519 619 aa4.11□□□□□ -1.75
VPS13C-208ENST00000559119 APOBEC1P41238 236 aaKnown RBP4.11□□□□□ -1.75
VPS13C-208ENST00000559119 CCR5P51681 352 aa4.11□□□□□ -1.75
VPS13C-208ENST00000559119 RPP30P78346 268 aaKnown RBP4.11□□□□□ -1.75
VPS13C-208ENST00000559119 MRPS5P82675 430 aaKnown RBP4.11□□□□□ -1.75
VPS13C-208ENST00000559119 TUBB2AQ13885 445 aa4.11□□□□□ -1.75
VPS13C-208ENST00000559119 FGFBP1Q14512 234 aa4.11□□□□□ -1.75
VPS13C-208ENST00000559119 METTL7BQ6UX53 244 aa4.11□□□□□ -1.75
VPS13C-208ENST00000559119 SH2D5Q6ZV89 423 aa4.11□□□□□ -1.75
VPS13C-208ENST00000559119 DPPA4Q7L190 304 aa4.11□□□□□ -1.75
VPS13C-208ENST00000559119 RBM15BQ8NDT2 890 aaKnown RBP4.11□□□□□ -1.75
VPS13C-208ENST00000559119 VGLL1Q99990 258 aa4.11□□□□□ -1.75
VPS13C-208ENST00000559119 PSD2Q9BQI7 771 aa4.11□□□□□ -1.75
VPS13C-208ENST00000559119 MCRIP2Q9BUT9 160 aaKnown RBP4.11□□□□□ -1.75
VPS13C-208ENST00000559119 TUBB2BQ9BVA1 445 aa4.11□□□□□ -1.75
VPS13C-208ENST00000559119 TRPC7Q9HCX4 862 aa4.11□□□□□ -1.75
VPS13C-208ENST00000559119 SLC6A13Q9NSD5 602 aa4.11□□□□□ -1.75
VPS13C-208ENST00000559119 BARHL2Q9NY43 387 aa4.11□□□□□ -1.75
VPS13C-208ENST00000559119 PCDHGB3Q9Y5G1 929 aa4.11□□□□□ -1.75
VPS13C-208ENST00000559119 CCDC194A0A1B0GVG4 234 aa4.1□□□□□ -1.75
VPS13C-208ENST00000559119 MEIOCA2RUB1 952 aa4.1□□□□□ -1.75
VPS13C-208ENST00000559119 FAM90A26D6RGX4 464 aa4.1□□□□□ -1.75
VPS13C-208ENST00000559119 H0YIN7 160 aa4.1□□□□□ -1.75
VPS13C-208ENST00000559119 SNAP23O00161 211 aa4.1□□□□□ -1.75
VPS13C-208ENST00000559119 NBNO60934 754 aa4.1□□□□□ -1.75
VPS13C-208ENST00000559119 PLA2G4BP0C869 781 aa4.1□□□□□ -1.75
VPS13C-208ENST00000559119 CEACAM1P13688 526 aa4.1□□□□□ -1.75
VPS13C-208ENST00000559119 OS9Q13438 667 aaPredicted RBP4.1□□□□□ -1.75
VPS13C-208ENST00000559119 KRTCAP3Q53RY4 240 aa4.1□□□□□ -1.75
VPS13C-208ENST00000559119 C10orf62Q5T681 223 aaPredicted RBP4.1□□□□□ -1.75
VPS13C-208ENST00000559119 FGFBP3Q8TAT2 258 aa4.1□□□□□ -1.75
VPS13C-208ENST00000559119 OXNAD1Q96HP4 312 aaPredicted RBP4.1□□□□□ -1.75
VPS13C-208ENST00000559119 FUZQ9BT04 418 aa4.1□□□□□ -1.75
VPS13C-208ENST00000559119 GPR63Q9BZJ6 419 aa4.1□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms