RNA–Protein interactions for RNA: ENST00000558157.5

USP3-206, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 2,439 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-206ENST00000558157 OR13J1Q8NGT2 312 aa10.84□□□□□ -0.67
USP3-206ENST00000558157 MAGEE2Q8TD90 523 aaPredicted RBP10.84□□□□□ -0.67
USP3-206ENST00000558157 STYXQ8WUJ0 223 aa10.84□□□□□ -0.67
USP3-206ENST00000558157 DACH2Q96NX9 599 aa10.84□□□□□ -0.67
USP3-206ENST00000558157 QKIQ96PU8 341 aaKnown RBP eCLIP10.84□□□□□ -0.671e-15■■■■■ 29.2
USP3-206ENST00000558157 BDH2Q9BUT1 245 aa10.84□□□□□ -0.67
USP3-206ENST00000558157 TMEM106CQ9BVX2 250 aa10.84□□□□□ -0.67
USP3-206ENST00000558157 MEAF6Q9HAF1 191 aa10.84□□□□□ -0.67
USP3-206ENST00000558157 PAK1IP1Q9NWT1 392 aaPredicted RBP10.84□□□□□ -0.67
USP3-206ENST00000558157 CACNG4Q9UBN1 327 aa10.84□□□□□ -0.67
USP3-206ENST00000558157 TBX21Q9UL17 535 aa10.84□□□□□ -0.67
USP3-206ENST00000558157 KIAA0100Q14667 2235 aaKnown RBP10.83□□□□□ -0.68
USP3-206ENST00000558157 RAD51BO15315 384 aa10.83□□□□□ -0.68
USP3-206ENST00000558157 GPC4O75487 556 aa10.83□□□□□ -0.68
USP3-206ENST00000558157 CCNKO75909 580 aa10.83□□□□□ -0.68
USP3-206ENST00000558157 NADKO95544 446 aaPredicted RBP10.83□□□□□ -0.68
USP3-206ENST00000558157 SNAP29O95721 258 aa10.83□□□□□ -0.68
USP3-206ENST00000558157 HPRP00739 348 aa10.83□□□□□ -0.68
USP3-206ENST00000558157 GFAPP14136 432 aa10.83□□□□□ -0.68
USP3-206ENST00000558157 GPD1P21695 349 aa10.83□□□□□ -0.68
USP3-206ENST00000558157 PKLRP30613 574 aa10.83□□□□□ -0.68
USP3-206ENST00000558157 NUDT1P36639 197 aa10.83□□□□□ -0.68
USP3-206ENST00000558157 CSRP3P50461 194 aa10.83□□□□□ -0.68
USP3-206ENST00000558157 CLCQ05315 142 aa10.83□□□□□ -0.68
USP3-206ENST00000558157 FOXM1Q08050 763 aa10.83□□□□□ -0.68
USP3-206ENST00000558157 HSPA14Q0VDF9 509 aa10.83□□□□□ -0.68
USP3-206ENST00000558157 ACOX1Q15067 660 aa10.83□□□□□ -0.68
USP3-206ENST00000558157 PLCL1Q15111 1095 aa10.83□□□□□ -0.68
USP3-206ENST00000558157 TTC23Q5W5X9 447 aa10.83□□□□□ -0.68
USP3-206ENST00000558157 DENND1BQ6P3S1 775 aa10.83□□□□□ -0.68
USP3-206ENST00000558157 R3HCC1LQ7Z5L2 792 aaKnown RBP10.83□□□□□ -0.68
USP3-206ENST00000558157 EMC1Q8N766 993 aa10.83□□□□□ -0.68
USP3-206ENST00000558157 HMGCLL1Q8TB92 370 aa10.83□□□□□ -0.68
USP3-206ENST00000558157 SPPL2BQ8TCT7 592 aa10.83□□□□□ -0.68
USP3-206ENST00000558157 TFAP2BQ92481 460 aa10.83□□□□□ -0.68
USP3-206ENST00000558157 AURKBQ96GD4 344 aaPredicted RBP10.83□□□□□ -0.68
USP3-206ENST00000558157 ELMO2Q96JJ3 720 aa10.83□□□□□ -0.68
USP3-206ENST00000558157 MUS81Q96NY9 551 aa10.83□□□□□ -0.68
USP3-206ENST00000558157 FKBP14Q9NWM8 211 aa10.83□□□□□ -0.68
USP3-206ENST00000558157 STMN3Q9NZ72 180 aa10.83□□□□□ -0.68
USP3-206ENST00000558157 HACD1B0YJ81 288 aa10.83□□□□□ -0.68
USP3-206ENST00000558157 PIRO00625 290 aa10.83□□□□□ -0.68
USP3-206ENST00000558157 NDUFS2O75306 463 aa10.83□□□□□ -0.68
USP3-206ENST00000558157 DAB1O75553 588 aa10.83□□□□□ -0.68
USP3-206ENST00000558157 JUNP05412 331 aaKnown RBP10.83□□□□□ -0.68
USP3-206ENST00000558157 THP07101 528 aa10.83□□□□□ -0.68
USP3-206ENST00000558157 CLTBP09497 229 aa10.83□□□□□ -0.68
USP3-206ENST00000558157 GRIA1P42261 906 aa10.83□□□□□ -0.68
USP3-206ENST00000558157 NKX2-5P52952 324 aaPredicted RBP10.83□□□□□ -0.68
USP3-206ENST00000558157 AGAP6Q5VW22 663 aa10.83□□□□□ -0.68
USP3-206ENST00000558157 ZNF544Q6NX49 715 aa10.83□□□□□ -0.68
USP3-206ENST00000558157 SLC24A5Q71RS6 500 aa10.83□□□□□ -0.68
USP3-206ENST00000558157 FKBP9P1Q75LS8 142 aa10.83□□□□□ -0.68
USP3-206ENST00000558157 STRA8Q7Z7C7 330 aa10.83□□□□□ -0.68
USP3-206ENST00000558157 C8orf59Q8N0T1 100 aaPredicted RBP10.83□□□□□ -0.68
USP3-206ENST00000558157 SIX5Q8N196 739 aa10.83□□□□□ -0.68
USP3-206ENST00000558157 TMEM151AQ8N4L1 468 aa10.83□□□□□ -0.68
USP3-206ENST00000558157 ESX1Q8N693 406 aa10.83□□□□□ -0.68
USP3-206ENST00000558157 PCDH19Q8TAB3 1148 aa10.83□□□□□ -0.68
USP3-206ENST00000558157 DYNC2LI1Q8TCX1 351 aa10.83□□□□□ -0.68
USP3-206ENST00000558157 ZNF560Q96MR9 790 aa10.83□□□□□ -0.68
USP3-206ENST00000558157 AGAP4Q96P64 663 aa10.83□□□□□ -0.68
USP3-206ENST00000558157 TASP1Q9H6P5 420 aa10.83□□□□□ -0.68
USP3-206ENST00000558157 TMEM39AQ9NV64 488 aa10.83□□□□□ -0.68
USP3-206ENST00000558157 NSMCE4AQ9NXX6 385 aa10.83□□□□□ -0.68
USP3-206ENST00000558157 HMGXB4Q9UGU5 601 aa10.83□□□□□ -0.68
USP3-206ENST00000558157 TLK1Q9UKI8 766 aa10.83□□□□□ -0.68
USP3-206ENST00000558157 PDE10AQ9Y233 779 aa10.83□□□□□ -0.68
USP3-206ENST00000558157 WBP11Q9Y2W2 641 aaKnown RBP10.83□□□□□ -0.68
USP3-206ENST00000558157 NDUFAF1Q9Y375 327 aa10.83□□□□□ -0.68
USP3-206ENST00000558157 A0A0A0MRY4 1105 aa10.82□□□□□ -0.68
USP3-206ENST00000558157 FAM149AA5PLN7 773 aa10.82□□□□□ -0.68
USP3-206ENST00000558157 B8ZZF3 427 aa10.82□□□□□ -0.68
USP3-206ENST00000558157 NRP1O14786 923 aa10.82□□□□□ -0.68
USP3-206ENST00000558157 MDM4O15151 490 aa10.82□□□□□ -0.68
USP3-206ENST00000558157 SEC24AO95486 1093 aa10.82□□□□□ -0.68
USP3-206ENST00000558157 POMCP01189 267 aa10.82□□□□□ -0.68
USP3-206ENST00000558157 ERVK-10P10266 1014 aa10.82□□□□□ -0.68
USP3-206ENST00000558157 MGAT1P26572 445 aa10.82□□□□□ -0.68
USP3-206ENST00000558157 ELK4P28324 431 aa10.82□□□□□ -0.68
USP3-206ENST00000558157 RRM2P31350 389 aa10.82□□□□□ -0.68
USP3-206ENST00000558157 ALDH3A2P51648 485 aa10.82□□□□□ -0.68
USP3-206ENST00000558157 DNAJB13P59910 316 aa10.82□□□□□ -0.68
USP3-206ENST00000558157 ORC1Q13415 861 aa10.82□□□□□ -0.68
USP3-206ENST00000558157 ANO4Q32M45 955 aa10.82□□□□□ -0.68
USP3-206ENST00000558157 CCNJQ5T5M9 372 aa10.82□□□□□ -0.68
USP3-206ENST00000558157 HEATR6Q6AI08 1181 aaKnown RBP10.82□□□□□ -0.68
USP3-206ENST00000558157 NECAB2Q7Z6G3 386 aa10.82□□□□□ -0.68
USP3-206ENST00000558157 DEFB128Q7Z7B8 93 aa10.82□□□□□ -0.68
USP3-206ENST00000558157 C14orf80Q86SX3 495 aa10.82□□□□□ -0.68
USP3-206ENST00000558157 SPPL2CQ8IUH8 684 aa10.82□□□□□ -0.68
USP3-206ENST00000558157 SPATA13Q96N96 652 aa10.82□□□□□ -0.68
USP3-206ENST00000558157 IL12RB2Q99665 862 aa10.82□□□□□ -0.68
USP3-206ENST00000558157 CYP3A43Q9HB55 503 aa10.82□□□□□ -0.68
USP3-206ENST00000558157 CCDC167Q9P0B6 97 aa10.82□□□□□ -0.68
USP3-206ENST00000558157 AP4E1Q9UPM8 1137 aa10.82□□□□□ -0.68
USP3-206ENST00000558157 A0A1W2PQ67 120 aa10.82□□□□□ -0.68
USP3-206ENST00000558157 CASTOR2A6NHX0 329 aa10.82□□□□□ -0.68
USP3-206ENST00000558157 A6NL46 340 aa10.82□□□□□ -0.68
USP3-206ENST00000558157 FADS2P1A8MWK0 482 aa10.82□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms