RNA–Protein interactions for RNA: ENST00000557348.5

SHMT2-229, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,659 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-229ENST00000557348 POLR2EP19388 210 aaKnown RBP12.57□□□□□ -0.4
SHMT2-229ENST00000557348 ITGALP20701 1170 aa12.57□□□□□ -0.4
SHMT2-229ENST00000557348 GLRBP48167 497 aa12.57□□□□□ -0.4
SHMT2-229ENST00000557348 CARD16Q5EG05 197 aa12.57□□□□□ -0.4
SHMT2-229ENST00000557348 RAB44Q7Z6P3 723 aaPredicted RBP12.57□□□□□ -0.4
SHMT2-229ENST00000557348 TMEM25Q86YD3 366 aa12.57□□□□□ -0.4
SHMT2-229ENST00000557348 CAMK1DQ8IU85 385 aa12.57□□□□□ -0.4
SHMT2-229ENST00000557348 RYBPQ8N488 228 aaPredicted RBP12.57□□□□□ -0.4
SHMT2-229ENST00000557348 CATSPER1Q8NEC5 780 aa12.57□□□□□ -0.4
SHMT2-229ENST00000557348 NAT14Q8WUY8 206 aa12.57□□□□□ -0.4
SHMT2-229ENST00000557348 LRIG1Q96JA1 1093 aa12.57□□□□□ -0.4
SHMT2-229ENST00000557348 C20orf27Q9GZN8 174 aa12.57□□□□□ -0.4
SHMT2-229ENST00000557348 DERL2Q9GZP9 239 aa12.57□□□□□ -0.4
SHMT2-229ENST00000557348 SMG9Q9H0W8 520 aaKnown RBP12.57□□□□□ -0.4
SHMT2-229ENST00000557348 ARL8BQ9NVJ2 186 aa12.57□□□□□ -0.4
SHMT2-229ENST00000557348 FKBPLQ9UIM3 349 aa12.57□□□□□ -0.4
SHMT2-229ENST00000557348 PADI4Q9UM07 663 aa12.57□□□□□ -0.4
SHMT2-229ENST00000557348 ARHGAP10A1A4S6 786 aa12.57□□□□□ -0.4
SHMT2-229ENST00000557348 CAPN14A8MX76 684 aa12.57□□□□□ -0.4
SHMT2-229ENST00000557348 PALM2-AKAP2B1ALY0 433 aaPredicted RBP12.57□□□□□ -0.4
SHMT2-229ENST00000557348 K7ERQ8 282 aa12.57□□□□□ -0.4
SHMT2-229ENST00000557348 CCL22O00626 93 aa12.57□□□□□ -0.4
SHMT2-229ENST00000557348 SMAD6O43541 496 aaKnown RBP12.57□□□□□ -0.4
SHMT2-229ENST00000557348 BUD23O43709 281 aaKnown RBP12.57□□□□□ -0.4
SHMT2-229ENST00000557348 DLX3O60479 287 aa12.57□□□□□ -0.4
SHMT2-229ENST00000557348 LYPLA1O75608 230 aaPredicted RBP12.57□□□□□ -0.4
SHMT2-229ENST00000557348 PRAMEF12O95522 483 aa12.57□□□□□ -0.4
SHMT2-229ENST00000557348 F7P08709 466 aaPredicted RBP12.57□□□□□ -0.4
SHMT2-229ENST00000557348 SBK3P0C264 359 aa12.57□□□□□ -0.4
SHMT2-229ENST00000557348 KITP10721 976 aa12.57□□□□□ -0.4
SHMT2-229ENST00000557348 UQCRBP14927 111 aa12.57□□□□□ -0.4
SHMT2-229ENST00000557348 ZNF7P17097 686 aaPredicted RBP12.57□□□□□ -0.4
SHMT2-229ENST00000557348 TFEBP19484 476 aa12.57□□□□□ -0.4
SHMT2-229ENST00000557348 RPS3P23396 243 aaKnown RBP eCLIP12.57□□□□□ -0.44e-7■■■□□ 16.5
SHMT2-229ENST00000557348 NUMBP49757 651 aa12.57□□□□□ -0.4
SHMT2-229ENST00000557348 RPL14P50914 215 aaKnown RBP12.57□□□□□ -0.4
SHMT2-229ENST00000557348 NAGLUP54802 743 aa12.57□□□□□ -0.4
SHMT2-229ENST00000557348 CDKN2DP55273 166 aa12.57□□□□□ -0.4
SHMT2-229ENST00000557348 DLG1Q12959 904 aa12.57□□□□□ -0.4
SHMT2-229ENST00000557348 ZNF460Q14592 562 aa12.57□□□□□ -0.4
SHMT2-229ENST00000557348 RAB30Q15771 203 aa12.57□□□□□ -0.4
SHMT2-229ENST00000557348 CRY1Q16526 586 aa12.57□□□□□ -0.4
SHMT2-229ENST00000557348 ZRANB3Q5FWF4 1079 aa12.57□□□□□ -0.4
SHMT2-229ENST00000557348 CES4AQ5XG92 561 aa12.57□□□□□ -0.4
SHMT2-229ENST00000557348 BRAT1Q6PJG6 821 aa12.57□□□□□ -0.4
SHMT2-229ENST00000557348 TPRG1Q6ZUI0 275 aa12.57□□□□□ -0.4
SHMT2-229ENST00000557348 HOMEZQ8IX15 550 aa12.57□□□□□ -0.4
SHMT2-229ENST00000557348 ADGRG2Q8IZP9 1017 aa12.57□□□□□ -0.4
SHMT2-229ENST00000557348 HCAR2Q8TDS4 363 aa12.57□□□□□ -0.4
SHMT2-229ENST00000557348 ECHDC3Q96DC8 303 aa12.57□□□□□ -0.4
SHMT2-229ENST00000557348 SUV39H2Q9H5I1 410 aa12.57□□□□□ -0.4
SHMT2-229ENST00000557348 POMKQ9H5K3 350 aa12.57□□□□□ -0.4
SHMT2-229ENST00000557348 RAD18Q9NS91 495 aa12.57□□□□□ -0.4
SHMT2-229ENST00000557348 TBCCD1Q9NVR7 557 aa12.57□□□□□ -0.4
SHMT2-229ENST00000557348 HECAQ9UBI9 543 aaPredicted RBP12.57□□□□□ -0.4
SHMT2-229ENST00000557348 MARCOQ9UEW3 520 aaPredicted RBP12.57□□□□□ -0.4
SHMT2-229ENST00000557348 BCAP29Q9UHQ4 241 aa12.57□□□□□ -0.4
SHMT2-229ENST00000557348 TRMT6Q9UJA5 497 aaKnown RBP12.57□□□□□ -0.4
SHMT2-229ENST00000557348 OAS3Q9Y6K5 1087 aaKnown RBP12.57□□□□□ -0.4
SHMT2-229ENST00000557348 C1orf232A0A0U1RR37 186 aa12.56□□□□□ -0.4
SHMT2-229ENST00000557348 TRPC5OSA6NMA1 111 aa12.56□□□□□ -0.4
SHMT2-229ENST00000557348 CASQ2O14958 399 aaPredicted RBP12.56□□□□□ -0.4
SHMT2-229ENST00000557348 SLC22A2O15244 555 aa12.56□□□□□ -0.4
SHMT2-229ENST00000557348 HDAC3O15379 428 aa12.56□□□□□ -0.4
SHMT2-229ENST00000557348 HOXC11O43248 304 aaPredicted RBP12.56□□□□□ -0.4
SHMT2-229ENST00000557348 CSPG5O95196 566 aa12.56□□□□□ -0.4
SHMT2-229ENST00000557348 NFATC1O95644 943 aa12.56□□□□□ -0.4
SHMT2-229ENST00000557348 SRPRAP08240 638 aaKnown RBP12.56□□□□□ -0.4
SHMT2-229ENST00000557348 CEBPBP17676 345 aa12.56□□□□□ -0.4
SHMT2-229ENST00000557348 SPAM1P38567 509 aa12.56□□□□□ -0.4
SHMT2-229ENST00000557348 SEMA3AQ14563 771 aa12.56□□□□□ -0.4
SHMT2-229ENST00000557348 DUSP6Q16828 381 aa12.56□□□□□ -0.4
SHMT2-229ENST00000557348 DGKKQ5KSL6 1271 aa12.56□□□□□ -0.4
SHMT2-229ENST00000557348 LY6G5CQ5SRR4 150 aa12.56□□□□□ -0.4
SHMT2-229ENST00000557348 SEL1L3Q68CR1 1132 aa12.56□□□□□ -0.4
SHMT2-229ENST00000557348 ZNF549Q6P9A3 640 aa12.56□□□□□ -0.4
SHMT2-229ENST00000557348 LYSMD3Q7Z3D4 306 aa12.56□□□□□ -0.4
SHMT2-229ENST00000557348 SNX20Q7Z614 316 aa12.56□□□□□ -0.4
SHMT2-229ENST00000557348 PDSS2Q86YH6 399 aa12.56□□□□□ -0.4
SHMT2-229ENST00000557348 CROCCP3Q8IVE0 287 aa12.56□□□□□ -0.4
SHMT2-229ENST00000557348 RBFAQ8N0V3 343 aa12.56□□□□□ -0.4
SHMT2-229ENST00000557348 STAG3L4Q8TBR4 150 aa12.56□□□□□ -0.4
SHMT2-229ENST00000557348 GRIN3AQ8TCU5 1115 aa12.56□□□□□ -0.4
SHMT2-229ENST00000557348 TRPC4APQ8TEL6 797 aa12.56□□□□□ -0.4
SHMT2-229ENST00000557348 OSCP1Q8WVF1 389 aa12.56□□□□□ -0.4
SHMT2-229ENST00000557348 L3HYPDHQ96EM0 354 aa12.56□□□□□ -0.4
SHMT2-229ENST00000557348 SCRN2Q96FV2 425 aa12.56□□□□□ -0.4
SHMT2-229ENST00000557348 MCCC1Q96RQ3 725 aaPredicted RBP12.56□□□□□ -0.4
SHMT2-229ENST00000557348 FBXO10Q9UK96 956 aa12.56□□□□□ -0.4
SHMT2-229ENST00000557348 CLEC4EQ9ULY5 219 aa12.56□□□□□ -0.4
SHMT2-229ENST00000557348 E5RI56 91 aa12.55□□□□□ -0.4
SHMT2-229ENST00000557348 MATN2O00339 956 aa12.55□□□□□ -0.4
SHMT2-229ENST00000557348 PRMT5O14744 637 aaPredicted RBP12.55□□□□□ -0.4
SHMT2-229ENST00000557348 HGSO14964 777 aaPredicted RBP12.55□□□□□ -0.4
SHMT2-229ENST00000557348 ZNF821O75541 412 aaPredicted RBP12.55□□□□□ -0.4
SHMT2-229ENST00000557348 SLC4A1P02730 911 aa12.55□□□□□ -0.4
SHMT2-229ENST00000557348 CYP2A6P11509 494 aaPredicted RBP12.55□□□□□ -0.4
SHMT2-229ENST00000557348 CD1DP15813 335 aa12.55□□□□□ -0.4
SHMT2-229ENST00000557348 ZNF30P17039 623 aa12.55□□□□□ -0.4
SHMT2-229ENST00000557348 IMPDH1P20839 514 aa12.55□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms