RNA–Protein interactions for RNA: ENST00000557342.5

SLIRP-209, Transcript of SRA stem-loop interacting RNA binding protein, humanhuman

TSL 1 (best) BASIC

Gene SLIRP, Length 408 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SLIRP-209ENST00000557342 GTF2H3Q13889 308 aa12.36□□□□□ -0.43
SLIRP-209ENST00000557342 CHRNA6Q15825 494 aa12.36□□□□□ -0.43
SLIRP-209ENST00000557342 ATP13A5Q4VNC0 1218 aa12.36□□□□□ -0.43
SLIRP-209ENST00000557342 LDLRAP1Q5SW96 308 aa12.36□□□□□ -0.43
SLIRP-209ENST00000557342 HES3Q5TGS1 186 aa12.36□□□□□ -0.43
SLIRP-209ENST00000557342 GUSBP11Q6P575 273 aa12.36□□□□□ -0.43
SLIRP-209ENST00000557342 FAM151BQ6UXP7 276 aa12.36□□□□□ -0.43
SLIRP-209ENST00000557342 PPP1R21Q6ZMI0 780 aa12.36□□□□□ -0.43
SLIRP-209ENST00000557342 CCNI2Q6ZMN8 369 aaPredicted RBP12.36□□□□□ -0.43
SLIRP-209ENST00000557342 ADGRG6Q86SQ4 1221 aa12.36□□□□□ -0.43
SLIRP-209ENST00000557342 NRROSQ86YC3 692 aa12.36□□□□□ -0.43
SLIRP-209ENST00000557342 TAB3Q8N5C8 712 aaPredicted RBP12.36□□□□□ -0.43
SLIRP-209ENST00000557342 PRELID2Q8N945 189 aa12.36□□□□□ -0.43
SLIRP-209ENST00000557342 DNAAF3Q8N9W5 541 aa12.36□□□□□ -0.43
SLIRP-209ENST00000557342 KYQ8NBH2 561 aa12.36□□□□□ -0.43
SLIRP-209ENST00000557342 GPR156Q8NFN8 814 aa12.36□□□□□ -0.43
SLIRP-209ENST00000557342 OR4K2Q8NGD2 314 aa12.36□□□□□ -0.43
SLIRP-209ENST00000557342 GDAP1Q8TB36 358 aa12.36□□□□□ -0.43
SLIRP-209ENST00000557342 MAPK15Q8TD08 544 aa12.36□□□□□ -0.43
SLIRP-209ENST00000557342 ACTRT1Q8TDG2 376 aa12.36□□□□□ -0.43
SLIRP-209ENST00000557342 PTCD2Q8WV60 388 aaKnown RBP12.36□□□□□ -0.43
SLIRP-209ENST00000557342 ZCCHC2Q9C0B9 1178 aaKnown RBP12.36□□□□□ -0.43
SLIRP-209ENST00000557342 OR2AG1Q9H205 316 aa12.36□□□□□ -0.43
SLIRP-209ENST00000557342 TAAR2Q9P1P5 351 aa12.36□□□□□ -0.43
SLIRP-209ENST00000557342 ATXN10Q9UBB4 475 aa12.36□□□□□ -0.43
SLIRP-209ENST00000557342 SNX12Q9UMY4 172 aa12.36□□□□□ -0.43
SLIRP-209ENST00000557342 RP1P56715 2156 aa12.35□□□□□ -0.43
SLIRP-209ENST00000557342 GOLGA6L10A0A0M3HER8 536 aa12.35□□□□□ -0.43
SLIRP-209ENST00000557342 B4DGG1 531 aa12.35□□□□□ -0.43
SLIRP-209ENST00000557342 AP3B1O00203 1094 aa12.35□□□□□ -0.43
SLIRP-209ENST00000557342 OPA1O60313 960 aa12.35□□□□□ -0.43
SLIRP-209ENST00000557342 NOBOXO60393 691 aa12.35□□□□□ -0.43
SLIRP-209ENST00000557342 CDK14O94921 469 aa12.35□□□□□ -0.43
SLIRP-209ENST00000557342 PRAMEF1O95521 474 aa12.35□□□□□ -0.43
SLIRP-209ENST00000557342 APRTP07741 180 aa12.35□□□□□ -0.43
SLIRP-209ENST00000557342 GLB1P16278 677 aa12.35□□□□□ -0.43
SLIRP-209ENST00000557342 ZNF8P17098 575 aaPredicted RBP12.35□□□□□ -0.43
SLIRP-209ENST00000557342 TCP1P17987 556 aaKnown RBP12.35□□□□□ -0.43
SLIRP-209ENST00000557342 AK4P27144 223 aaPredicted RBP12.35□□□□□ -0.43
SLIRP-209ENST00000557342 RPL22P35268 128 aaKnown RBP12.35□□□□□ -0.43
SLIRP-209ENST00000557342 ACTR1BP42025 376 aa12.35□□□□□ -0.43
SLIRP-209ENST00000557342 KCNJ1P48048 391 aa12.35□□□□□ -0.43
SLIRP-209ENST00000557342 ZNF140P52738 457 aaPredicted RBP12.35□□□□□ -0.43
SLIRP-209ENST00000557342 ACTR1AP61163 376 aa12.35□□□□□ -0.43
SLIRP-209ENST00000557342 GNG11P61952 73 aa12.35□□□□□ -0.43
SLIRP-209ENST00000557342 INSM1Q01101 510 aaPredicted RBP12.35□□□□□ -0.43
SLIRP-209ENST00000557342 C14orf28Q4W4Y0 310 aa12.35□□□□□ -0.43
SLIRP-209ENST00000557342 SLC30A9Q6PML9 568 aa12.35□□□□□ -0.43
SLIRP-209ENST00000557342 CHST15Q7LFX5 561 aaPredicted RBP12.35□□□□□ -0.43
SLIRP-209ENST00000557342 ZNF398Q8TD17 642 aa12.35□□□□□ -0.43
SLIRP-209ENST00000557342 ZDHHC1Q8WTX9 485 aa12.35□□□□□ -0.43
SLIRP-209ENST00000557342 STYXQ8WUJ0 223 aa12.35□□□□□ -0.43
SLIRP-209ENST00000557342 MAGOHBQ96A72 148 aaKnown RBP12.35□□□□□ -0.43
SLIRP-209ENST00000557342 MS4A14Q96JA4 679 aa12.35□□□□□ -0.43
SLIRP-209ENST00000557342 TTC25Q96NG3 672 aa12.35□□□□□ -0.43
SLIRP-209ENST00000557342 EIF2B3Q9NR50 452 aaKnown RBP12.35□□□□□ -0.43
SLIRP-209ENST00000557342 SPATS2LQ9NUQ6 558 aaKnown RBP12.35□□□□□ -0.43
SLIRP-209ENST00000557342 SMOXQ9NWM0 555 aa12.35□□□□□ -0.43
SLIRP-209ENST00000557342 PYCARDQ9ULZ3 195 aa12.35□□□□□ -0.43
SLIRP-209ENST00000557342 CLCA2Q9UQC9 943 aa12.35□□□□□ -0.43
SLIRP-209ENST00000557342 ASXL3Q9C0F0 2248 aa12.34□□□□□ -0.43
SLIRP-209ENST00000557342 CHUKO15111 745 aa12.34□□□□□ -0.43
SLIRP-209ENST00000557342 KMOO15229 486 aa12.34□□□□□ -0.43
SLIRP-209ENST00000557342 ZW10O43264 779 aa12.34□□□□□ -0.43
SLIRP-209ENST00000557342 LDB2O43679 373 aa12.34□□□□□ -0.43
SLIRP-209ENST00000557342 NUDT21O43809 227 aaKnown RBP12.34□□□□□ -0.43
SLIRP-209ENST00000557342 SRP72O76094 671 aaKnown RBP12.34□□□□□ -0.43
SLIRP-209ENST00000557342 ZSCAN5DPP0CG00 497 aa12.34□□□□□ -0.43
SLIRP-209ENST00000557342 SLC2A4P14672 509 aa12.34□□□□□ -0.43
SLIRP-209ENST00000557342 PNLIPP16233 465 aa12.34□□□□□ -0.43
SLIRP-209ENST00000557342 TPH1P17752 444 aa12.34□□□□□ -0.43
SLIRP-209ENST00000557342 CLCNKAP51800 687 aa12.34□□□□□ -0.43
SLIRP-209ENST00000557342 BASP1P80723 227 aaKnown RBP12.34□□□□□ -0.43
SLIRP-209ENST00000557342 TMEM115Q12893 351 aaPredicted RBP12.34□□□□□ -0.43
SLIRP-209ENST00000557342 BIRC2Q13490 618 aa12.34□□□□□ -0.43
SLIRP-209ENST00000557342 SEPT6Q14141 434 aa12.34□□□□□ -0.43
SLIRP-209ENST00000557342 HLTFQ14527 1009 aaKnown RBP eCLIP12.34□□□□□ -0.43
SLIRP-209ENST00000557342 PTPRCAPQ14761 206 aa12.34□□□□□ -0.43
SLIRP-209ENST00000557342 CYP1B1Q16678 543 aa12.34□□□□□ -0.43
SLIRP-209ENST00000557342 ZNF648Q5T619 568 aaPredicted RBP12.34□□□□□ -0.43
SLIRP-209ENST00000557342 PRUNE1Q86TP1 453 aa12.34□□□□□ -0.43
SLIRP-209ENST00000557342 LRRTM4Q86VH4 590 aa12.34□□□□□ -0.43
SLIRP-209ENST00000557342 GLIS1Q8NBF1 620 aa12.34□□□□□ -0.43
SLIRP-209ENST00000557342 DDHD1Q8NEL9 900 aa12.34□□□□□ -0.43
SLIRP-209ENST00000557342 OR52K1Q8NGK4 314 aa12.34□□□□□ -0.43
SLIRP-209ENST00000557342 OR13C4Q8NGS5 318 aa12.34□□□□□ -0.43
SLIRP-209ENST00000557342 COG1Q8WTW3 980 aa12.34□□□□□ -0.43
SLIRP-209ENST00000557342 ULK4Q96C45 1275 aa12.34□□□□□ -0.43
SLIRP-209ENST00000557342 CCDC3Q9BQI4 270 aa12.34□□□□□ -0.43
SLIRP-209ENST00000557342 AP1M1Q9BXS5 423 aa12.34□□□□□ -0.43
SLIRP-209ENST00000557342 ASB8Q9H765 288 aa12.34□□□□□ -0.43
SLIRP-209ENST00000557342 ARFGAP3Q9NP61 516 aa12.34□□□□□ -0.43
SLIRP-209ENST00000557342 FKBPLQ9UIM3 349 aa12.34□□□□□ -0.43
SLIRP-209ENST00000557342 TMPRSS11EQ9UL52 423 aa12.34□□□□□ -0.43
SLIRP-209ENST00000557342 PLEKHM1Q9Y4G2 1056 aa12.34□□□□□ -0.43
SLIRP-209ENST00000557342 KCTD3Q9Y597 815 aa12.34□□□□□ -0.43
SLIRP-209ENST00000557342 SLC30A1Q9Y6M5 507 aa12.34□□□□□ -0.43
SLIRP-209ENST00000557342 HEATR9A2RTY3 570 aa12.33□□□□□ -0.44
SLIRP-209ENST00000557342 H7C0S8 307 aa12.33□□□□□ -0.44
SLIRP-209ENST00000557342 GAPDHSO14556 408 aaPredicted RBP12.33□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms