RNA–Protein interactions for RNA: ENST00000556486.5

SCFD1-220, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 974 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-220ENST00000556486 OCIAD1Q9NX40 245 aa10□□□□□ -0.81
SCFD1-220ENST00000556486 TMEM9Q9P0T7 183 aa10□□□□□ -0.81
SCFD1-220ENST00000556486 MRPS18BQ9Y676 258 aaKnown RBP10□□□□□ -0.81
SCFD1-220ENST00000556486 TNRC6AQ8NDV7 1962 aaKnown RBP10□□□□□ -0.81
SCFD1-220ENST00000556486 ARHGEF17Q96PE2 2063 aaPredicted RBP9.99□□□□□ -0.81
SCFD1-220ENST00000556486 IGHV5-10-1A0A0J9YXX1 117 aa9.99□□□□□ -0.81
SCFD1-220ENST00000556486 A0A1W2PQ67 120 aa9.99□□□□□ -0.81
SCFD1-220ENST00000556486 TMEM202A6NGA9 273 aa9.99□□□□□ -0.81
SCFD1-220ENST00000556486 ARHGAP42A6NI28 874 aa9.99□□□□□ -0.81
SCFD1-220ENST00000556486 ZNF891A8MT65 544 aaPredicted RBP9.99□□□□□ -0.81
SCFD1-220ENST00000556486 TRAFD1O14545 582 aaPredicted RBP9.99□□□□□ -0.81
SCFD1-220ENST00000556486 NUDT21O43809 227 aaKnown RBP9.99□□□□□ -0.81
SCFD1-220ENST00000556486 RAD1O60671 282 aa9.99□□□□□ -0.81
SCFD1-220ENST00000556486 SEMA7AO75326 666 aa9.99□□□□□ -0.81
SCFD1-220ENST00000556486 RECQL5O94762 991 aaPredicted RBP9.99□□□□□ -0.81
SCFD1-220ENST00000556486 TNFP01375 233 aa9.99□□□□□ -0.81
SCFD1-220ENST00000556486 ATP1A3P13637 1013 aa9.99□□□□□ -0.81
SCFD1-220ENST00000556486 FERP16591 822 aa9.99□□□□□ -0.81
SCFD1-220ENST00000556486 GM2AP17900 193 aa9.99□□□□□ -0.81
SCFD1-220ENST00000556486 CD82P27701 267 aa9.99□□□□□ -0.81
SCFD1-220ENST00000556486 SERPINA4P29622 427 aa9.99□□□□□ -0.81
SCFD1-220ENST00000556486 RGRP47804 291 aa9.99□□□□□ -0.81
SCFD1-220ENST00000556486 HCAR3P49019 387 aa9.99□□□□□ -0.81
SCFD1-220ENST00000556486 PPM1FP49593 454 aaPredicted RBP9.99□□□□□ -0.81
SCFD1-220ENST00000556486 AP1S1P61966 158 aa9.99□□□□□ -0.81
SCFD1-220ENST00000556486 POLR2LP62875 67 aaKnown RBP9.99□□□□□ -0.81
SCFD1-220ENST00000556486 B4GALNT1Q00973 533 aa9.99□□□□□ -0.81
SCFD1-220ENST00000556486 MYL5Q02045 173 aa9.99□□□□□ -0.81
SCFD1-220ENST00000556486 CDC20Q12834 499 aa9.99□□□□□ -0.81
SCFD1-220ENST00000556486 MAMLD1Q13495 774 aa9.99□□□□□ -0.81
SCFD1-220ENST00000556486 HLTFQ14527 1009 aaKnown RBP eCLIP9.99□□□□□ -0.81
SCFD1-220ENST00000556486 NR1D2Q14995 579 aa9.99□□□□□ -0.81
SCFD1-220ENST00000556486 PPP2R5EQ16537 467 aa9.99□□□□□ -0.81
SCFD1-220ENST00000556486 CLPPQ16740 277 aaPredicted RBP9.99□□□□□ -0.81
SCFD1-220ENST00000556486 SPECC1LQ69YQ0 1117 aa9.99□□□□□ -0.81
SCFD1-220ENST00000556486 PLEKHA7Q6IQ23 1121 aa9.99□□□□□ -0.81
SCFD1-220ENST00000556486 DCUN1D2Q6PH85 259 aa9.99□□□□□ -0.81
SCFD1-220ENST00000556486 LIPIQ6XZB0 460 aa9.99□□□□□ -0.81
SCFD1-220ENST00000556486 CYP4V2Q6ZWL3 525 aaPredicted RBP9.99□□□□□ -0.81
SCFD1-220ENST00000556486 DPPA4Q7L190 304 aa9.99□□□□□ -0.81
SCFD1-220ENST00000556486 IRF2BP2Q7Z5L9 587 aa9.99□□□□□ -0.81
SCFD1-220ENST00000556486 SRLQ86TD4 932 aa9.99□□□□□ -0.81
SCFD1-220ENST00000556486 C17orf82Q86X59 251 aaPredicted RBP9.99□□□□□ -0.81
SCFD1-220ENST00000556486 ARHGAP12Q8IWW6 846 aa9.99□□□□□ -0.81
SCFD1-220ENST00000556486 CBARPQ8N350 705 aaPredicted RBP9.99□□□□□ -0.81
SCFD1-220ENST00000556486 ANKRD20A12PQ8NF67 263 aa9.99□□□□□ -0.81
SCFD1-220ENST00000556486 OR56A4Q8NGH8 313 aa9.99□□□□□ -0.81
SCFD1-220ENST00000556486 THAP3Q8WTV1 239 aaPredicted RBP9.99□□□□□ -0.81
SCFD1-220ENST00000556486 PATE1Q8WXA2 126 aa9.99□□□□□ -0.81
SCFD1-220ENST00000556486 TAAR9Q96RI9 348 aa9.99□□□□□ -0.81
SCFD1-220ENST00000556486 SLC39A8Q9C0K1 460 aa9.99□□□□□ -0.81
SCFD1-220ENST00000556486 HSD3B7Q9H2F3 369 aa9.99□□□□□ -0.81
SCFD1-220ENST00000556486 GPN2Q9H9Y4 310 aaPredicted RBP9.99□□□□□ -0.81
SCFD1-220ENST00000556486 FGF22Q9HCT0 170 aa9.99□□□□□ -0.81
SCFD1-220ENST00000556486 LMBRD1Q9NUN5 540 aa9.99□□□□□ -0.81
SCFD1-220ENST00000556486 PARVAQ9NVD7 372 aa9.99□□□□□ -0.81
SCFD1-220ENST00000556486 KCTD5Q9NXV2 234 aa9.99□□□□□ -0.81
SCFD1-220ENST00000556486 SLC39A1Q9NY26 324 aa9.99□□□□□ -0.81
SCFD1-220ENST00000556486 TUBD1Q9UJT1 453 aa9.99□□□□□ -0.81
SCFD1-220ENST00000556486 AP4E1Q9UPM8 1137 aa9.99□□□□□ -0.81
SCFD1-220ENST00000556486 LOC101059948A0A1B0GTJ6 334 aa9.98□□□□□ -0.81
SCFD1-220ENST00000556486 TMEM191CA6NGB0 347 aa9.98□□□□□ -0.81
SCFD1-220ENST00000556486 IQCJ-SCHIP1C9J366 451 aaPredicted RBP9.98□□□□□ -0.81
SCFD1-220ENST00000556486 CACNB4O00305 520 aaPredicted RBP9.98□□□□□ -0.81
SCFD1-220ENST00000556486 SOCS5O75159 536 aa9.98□□□□□ -0.81
SCFD1-220ENST00000556486 PALMO75781 387 aa9.98□□□□□ -0.81
SCFD1-220ENST00000556486 CPNE6O95741 557 aa9.98□□□□□ -0.81
SCFD1-220ENST00000556486 B3GALT4O96024 378 aa9.98□□□□□ -0.81
SCFD1-220ENST00000556486 CD33P20138 364 aa9.98□□□□□ -0.81
SCFD1-220ENST00000556486 TEAD1P28347 426 aa9.98□□□□□ -0.81
SCFD1-220ENST00000556486 PAPOLAP51003 745 aaKnown RBP9.98□□□□□ -0.81
SCFD1-220ENST00000556486 UBXN1Q04323 297 aa9.98□□□□□ -0.81
SCFD1-220ENST00000556486 PCDH1Q08174 1060 aa9.98□□□□□ -0.81
SCFD1-220ENST00000556486 IL10RBQ08334 325 aa9.98□□□□□ -0.81
SCFD1-220ENST00000556486 KLRB1Q12918 225 aa9.98□□□□□ -0.81
SCFD1-220ENST00000556486 CFAP58Q5T655 872 aa9.98□□□□□ -0.81
SCFD1-220ENST00000556486 ERMARDQ5T6L9 678 aa9.98□□□□□ -0.81
SCFD1-220ENST00000556486 ANKS6Q68DC2 871 aa9.98□□□□□ -0.81
SCFD1-220ENST00000556486 RFX8Q6ZV50 586 aa9.98□□□□□ -0.81
SCFD1-220ENST00000556486 ZNF761Q86XN6 746 aaPredicted RBP9.98□□□□□ -0.81
SCFD1-220ENST00000556486 SULF2Q8IWU5 870 aa9.98□□□□□ -0.81
SCFD1-220ENST00000556486 LZTR1Q8N653 840 aa9.98□□□□□ -0.81
SCFD1-220ENST00000556486 ARFGAP1Q8N6T3 406 aa9.98□□□□□ -0.81
SCFD1-220ENST00000556486 NPWQ8N729 165 aa9.98□□□□□ -0.81
SCFD1-220ENST00000556486 STK35Q8TDR2 534 aa9.98□□□□□ -0.81
SCFD1-220ENST00000556486 ZNF599Q96NL3 588 aa9.98□□□□□ -0.81
SCFD1-220ENST00000556486 CYP4F12Q9HCS2 524 aa9.98□□□□□ -0.81
SCFD1-220ENST00000556486 SPATS2LQ9NUQ6 558 aaKnown RBP9.98□□□□□ -0.81
SCFD1-220ENST00000556486 AKAP7Q9P0M2 348 aaPredicted RBP9.98□□□□□ -0.81
SCFD1-220ENST00000556486 PRRC2CQ9Y520 2896 aaKnown RBP9.97□□□□□ -0.81
SCFD1-220ENST00000556486 FBN2P35556 2912 aa9.97□□□□□ -0.81
SCFD1-220ENST00000556486 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP9.97□□□□□ -0.81
SCFD1-220ENST00000556486 EFCAB7A8K855 629 aa9.97□□□□□ -0.81
SCFD1-220ENST00000556486 RHPN2P1A8MT19 583 aa9.97□□□□□ -0.81
SCFD1-220ENST00000556486 A8MU76 341 aa9.97□□□□□ -0.81
SCFD1-220ENST00000556486 EEF2KO00418 725 aaKnown RBP9.97□□□□□ -0.81
SCFD1-220ENST00000556486 HTRA2O43464 458 aaPredicted RBP9.97□□□□□ -0.81
SCFD1-220ENST00000556486 MAN1A2O60476 641 aa9.97□□□□□ -0.81
SCFD1-220ENST00000556486 KRT38O76015 456 aa9.97□□□□□ -0.81
SCFD1-220ENST00000556486 GHRHP01286 108 aa9.97□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms