RNA–Protein interactions for RNA: ENST00000554467.5

SHMT2-212, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 3,416 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-212ENST00000554467 AGAP9Q5VTM2 703 aa11.63□□□□□ -0.55
SHMT2-212ENST00000554467 PAOXQ6QHF9 649 aa11.63□□□□□ -0.55
SHMT2-212ENST00000554467 DDX51Q8N8A6 666 aaKnown RBP eCLIP11.63□□□□□ -0.55
SHMT2-212ENST00000554467 CATSPER2Q96P56 530 aa11.63□□□□□ -0.55
SHMT2-212ENST00000554467 NCKIPSDQ9NZQ3 722 aa11.63□□□□□ -0.55
SHMT2-212ENST00000554467 SLC7A8Q9UHI5 535 aa11.63□□□□□ -0.55
SHMT2-212ENST00000554467 NCF1BA6NI72 391 aaPredicted RBP11.63□□□□□ -0.55
SHMT2-212ENST00000554467 NCF1CA8MVU1 366 aaPredicted RBP11.63□□□□□ -0.55
SHMT2-212ENST00000554467 NEDD8-MDP1E9PL57 170 aa11.63□□□□□ -0.55
SHMT2-212ENST00000554467 F8W8V4 182 aa11.63□□□□□ -0.55
SHMT2-212ENST00000554467 PPP6CO00743 305 aa11.63□□□□□ -0.55
SHMT2-212ENST00000554467 NIPSNAP2O75323 286 aa11.63□□□□□ -0.55
SHMT2-212ENST00000554467 NDUFS3O75489 264 aa11.63□□□□□ -0.55
SHMT2-212ENST00000554467 SRP72O76094 671 aaKnown RBP11.63□□□□□ -0.55
SHMT2-212ENST00000554467 SIX3O95343 332 aaPredicted RBP11.63□□□□□ -0.55
SHMT2-212ENST00000554467 NCF1P14598 390 aaPredicted RBP11.63□□□□□ -0.55
SHMT2-212ENST00000554467 LPOP22079 712 aaPredicted RBP11.63□□□□□ -0.55
SHMT2-212ENST00000554467 CA5AP35218 305 aa11.63□□□□□ -0.55
SHMT2-212ENST00000554467 CDH13P55290 713 aa11.63□□□□□ -0.55
SHMT2-212ENST00000554467 ACTR3P61158 418 aa11.63□□□□□ -0.55
SHMT2-212ENST00000554467 TAF1AQ15573 450 aaPredicted RBP11.63□□□□□ -0.55
SHMT2-212ENST00000554467 PTPRNQ16849 979 aa11.63□□□□□ -0.55
SHMT2-212ENST00000554467 DGKKQ5KSL6 1271 aa11.63□□□□□ -0.55
SHMT2-212ENST00000554467 TCHHL1Q5QJ38 904 aaPredicted RBP11.63□□□□□ -0.55
SHMT2-212ENST00000554467 ASTLQ6HA08 431 aaPredicted RBP11.63□□□□□ -0.55
SHMT2-212ENST00000554467 FAM109BQ6ICB4 259 aaPredicted RBP11.63□□□□□ -0.55
SHMT2-212ENST00000554467 PAQR3Q6TCH7 311 aa11.63□□□□□ -0.55
SHMT2-212ENST00000554467 ZFP28Q8NHY6 868 aa11.63□□□□□ -0.55
SHMT2-212ENST00000554467 ZSWIM3Q96MP5 696 aa11.63□□□□□ -0.55
SHMT2-212ENST00000554467 ADGRE3Q9BY15 652 aa11.63□□□□□ -0.55
SHMT2-212ENST00000554467 GPR63Q9BZJ6 419 aa11.63□□□□□ -0.55
SHMT2-212ENST00000554467 EPB41L1Q9H4G0 881 aa11.63□□□□□ -0.55
SHMT2-212ENST00000554467 ZDHHC7Q9NXF8 308 aa11.63□□□□□ -0.55
SHMT2-212ENST00000554467 UBAP1Q9NZ09 502 aa11.63□□□□□ -0.55
SHMT2-212ENST00000554467 ADAMTS6Q9UKP5 1117 aa11.63□□□□□ -0.55
SHMT2-212ENST00000554467 IKZF3Q9UKT9 509 aa11.63□□□□□ -0.55
SHMT2-212ENST00000554467 NOTCH4Q99466 2003 aa11.63□□□□□ -0.55
SHMT2-212ENST00000554467 GFRA2O00451 464 aa11.62□□□□□ -0.55
SHMT2-212ENST00000554467 TXNDC9O14530 226 aa11.62□□□□□ -0.55
SHMT2-212ENST00000554467 COL6A2P12110 1019 aa11.62□□□□□ -0.55
SHMT2-212ENST00000554467 SERPINB5P36952 375 aa11.62□□□□□ -0.55
SHMT2-212ENST00000554467 RPL14P50914 215 aaKnown RBP11.62□□□□□ -0.55
SHMT2-212ENST00000554467 PDAP1Q13442 181 aaKnown RBP11.62□□□□□ -0.55
SHMT2-212ENST00000554467 TMEM259Q4ZIN3 620 aa11.62□□□□□ -0.55
SHMT2-212ENST00000554467 KLC3Q6P597 504 aa11.62□□□□□ -0.55
SHMT2-212ENST00000554467 KLHL35Q6PF15 583 aa11.62□□□□□ -0.55
SHMT2-212ENST00000554467 FAM151BQ6UXP7 276 aa11.62□□□□□ -0.55
SHMT2-212ENST00000554467 CCDC149Q6ZUS6 474 aa11.62□□□□□ -0.55
SHMT2-212ENST00000554467 MRPL43Q8N983 215 aaKnown RBP11.62□□□□□ -0.55
SHMT2-212ENST00000554467 SNX31Q8N9S9 440 aa11.62□□□□□ -0.55
SHMT2-212ENST00000554467 CLP1Q92989 425 aaKnown RBP11.62□□□□□ -0.55
SHMT2-212ENST00000554467 UBXN10Q96LJ8 280 aa11.62□□□□□ -0.55
SHMT2-212ENST00000554467 C2orf49Q9BVC5 232 aaPredicted RBP11.62□□□□□ -0.55
SHMT2-212ENST00000554467 NDE1Q9NXR1 346 aa11.62□□□□□ -0.55
SHMT2-212ENST00000554467 DNMT3BQ9UBC3 853 aaKnown RBP11.62□□□□□ -0.55
SHMT2-212ENST00000554467 SMIM31A0A1B0GVY4 71 aa11.62□□□□□ -0.55
SHMT2-212ENST00000554467 TMEM114B3SHH9 223 aa11.62□□□□□ -0.55
SHMT2-212ENST00000554467 UBXN8O00124 270 aa11.62□□□□□ -0.55
SHMT2-212ENST00000554467 GRM6O15303 877 aa11.62□□□□□ -0.55
SHMT2-212ENST00000554467 GRID2O43424 1007 aa11.62□□□□□ -0.55
SHMT2-212ENST00000554467 VCLP18206 1134 aa11.62□□□□□ -0.55
SHMT2-212ENST00000554467 ITGB6P18564 788 aa11.62□□□□□ -0.55
SHMT2-212ENST00000554467 HLA-FP30511 346 aa11.62□□□□□ -0.55
SHMT2-212ENST00000554467 CD97P48960 835 aa11.62□□□□□ -0.55
SHMT2-212ENST00000554467 OR4D1Q15615 310 aa11.62□□□□□ -0.55
SHMT2-212ENST00000554467 EPGNQ6UW88 154 aa11.62□□□□□ -0.55
SHMT2-212ENST00000554467 ISCA2Q86U28 154 aa11.62□□□□□ -0.55
SHMT2-212ENST00000554467 ZSWIM9Q86XI8 627 aa11.62□□□□□ -0.55
SHMT2-212ENST00000554467 ULK2Q8IYT8 1036 aa11.62□□□□□ -0.55
SHMT2-212ENST00000554467 TSPAN17Q96FV3 270 aa11.62□□□□□ -0.55
SHMT2-212ENST00000554467 GPR21Q99679 349 aa11.62□□□□□ -0.55
SHMT2-212ENST00000554467 TUBB6Q9BUF5 446 aa11.62□□□□□ -0.55
SHMT2-212ENST00000554467 FDXRP22570 491 aa11.61□□□□□ -0.55
SHMT2-212ENST00000554467 ATP5F1P24539 256 aaPredicted RBP11.61□□□□□ -0.55
SHMT2-212ENST00000554467 CLCN4P51793 760 aa11.61□□□□□ -0.55
SHMT2-212ENST00000554467 KRT72Q14CN4 511 aa11.61□□□□□ -0.55
SHMT2-212ENST00000554467 PLEKHG6Q3KR16 790 aa11.61□□□□□ -0.55
SHMT2-212ENST00000554467 B3GNT6Q6ZMB0 384 aa11.61□□□□□ -0.55
SHMT2-212ENST00000554467 HTR3DQ70Z44 454 aa11.61□□□□□ -0.55
SHMT2-212ENST00000554467 GRASPQ7Z6J2 395 aaPredicted RBP11.61□□□□□ -0.55
SHMT2-212ENST00000554467 TMPRSS6Q8IU80 811 aa11.61□□□□□ -0.55
SHMT2-212ENST00000554467 DCAF4L2Q8NA75 395 aa11.61□□□□□ -0.55
SHMT2-212ENST00000554467 SIDT2Q8NBJ9 832 aaKnown RBP11.61□□□□□ -0.55
SHMT2-212ENST00000554467 GABPB2Q8TAK5 448 aaPredicted RBP11.61□□□□□ -0.55
SHMT2-212ENST00000554467 RDH11Q8TC12 318 aa11.61□□□□□ -0.55
SHMT2-212ENST00000554467 SORCS1Q8WY21 1168 aa11.61□□□□□ -0.55
SHMT2-212ENST00000554467 ERLEC1Q96DZ1 483 aa11.61□□□□□ -0.55
SHMT2-212ENST00000554467 RAD9AQ99638 391 aa11.61□□□□□ -0.55
SHMT2-212ENST00000554467 EMILIN2Q9BXX0 1053 aa11.61□□□□□ -0.55
SHMT2-212ENST00000554467 TCF7L2Q9NQB0 619 aa11.61□□□□□ -0.55
SHMT2-212ENST00000554467 TAGLN3Q9UI15 199 aa11.61□□□□□ -0.55
SHMT2-212ENST00000554467 SLCO3A1Q9UIG8 710 aa11.61□□□□□ -0.55
SHMT2-212ENST00000554467 WDR37Q9Y2I8 494 aa11.61□□□□□ -0.55
SHMT2-212ENST00000554467 MED16Q9Y2X0 877 aa11.61□□□□□ -0.55
SHMT2-212ENST00000554467 RAP2CQ9Y3L5 183 aa11.61□□□□□ -0.55
SHMT2-212ENST00000554467 MAGEC1O60732 1142 aa11.61□□□□□ -0.55
SHMT2-212ENST00000554467 RHOP08100 348 aa11.61□□□□□ -0.55
SHMT2-212ENST00000554467 UQCRBP14927 111 aa11.61□□□□□ -0.55
SHMT2-212ENST00000554467 MSX2P35548 267 aaPredicted RBP11.61□□□□□ -0.55
SHMT2-212ENST00000554467 BMPR1AP36894 532 aa11.61□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms