RNA–Protein interactions for RNA: ENST00000553837.5

SHMT2-207, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 2,152 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-207ENST00000553837 CD300CQ08708 224 aa12.19□□□□□ -0.46
SHMT2-207ENST00000553837 PHKG1Q16816 387 aa12.19□□□□□ -0.46
SHMT2-207ENST00000553837 FAM209AQ5JX71 171 aa12.19□□□□□ -0.46
SHMT2-207ENST00000553837 TIGD7Q6NT04 549 aaPredicted RBP12.19□□□□□ -0.46
SHMT2-207ENST00000553837 MSANTD2Q6P1R3 559 aa12.19□□□□□ -0.46
SHMT2-207ENST00000553837 CYP2R1Q6VVX0 501 aa12.19□□□□□ -0.46
SHMT2-207ENST00000553837 LDB1Q86U70 411 aaPredicted RBP12.19□□□□□ -0.46
SHMT2-207ENST00000553837 DHFR2Q86XF0 187 aa12.19□□□□□ -0.46
SHMT2-207ENST00000553837 SLC7A5P1Q8MH63 180 aa12.19□□□□□ -0.46
SHMT2-207ENST00000553837 UMODL1-AS1Q8N2C9 162 aa12.19□□□□□ -0.46
SHMT2-207ENST00000553837 CBR4Q8N4T8 237 aa12.19□□□□□ -0.46
SHMT2-207ENST00000553837 OR13J1Q8NGT2 312 aa12.19□□□□□ -0.46
SHMT2-207ENST00000553837 PSMG2Q969U7 264 aa12.19□□□□□ -0.46
SHMT2-207ENST00000553837 MARK4Q96L34 752 aa12.19□□□□□ -0.46
SHMT2-207ENST00000553837 ZNF641Q96N77 438 aaPredicted RBP12.19□□□□□ -0.46
SHMT2-207ENST00000553837 ZNF347Q96SE7 839 aa12.19□□□□□ -0.46
SHMT2-207ENST00000553837 SLC25A51Q9H1U9 297 aa12.19□□□□□ -0.46
SHMT2-207ENST00000553837 CRISPLD1Q9H336 500 aa12.19□□□□□ -0.46
SHMT2-207ENST00000553837 TNFRSF12AQ9NP84 129 aa12.19□□□□□ -0.46
SHMT2-207ENST00000553837 C8orf4Q9NR00 106 aa12.19□□□□□ -0.46
SHMT2-207ENST00000553837 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP12.19□□□□□ -0.465e-12■■□□□ 11.4
SHMT2-207ENST00000553837 HCSTQ9UBK5 93 aa12.19□□□□□ -0.46
SHMT2-207ENST00000553837 FBXO9Q9UK97 447 aaPredicted RBP12.19□□□□□ -0.46
SHMT2-207ENST00000553837 KCTD3Q9Y597 815 aa12.19□□□□□ -0.46
SHMT2-207ENST00000553837 THSD7BQ9C0I4 1608 aa12.19□□□□□ -0.46
SHMT2-207ENST00000553837 SAC3D1A6NKF1 404 aa12.19□□□□□ -0.46
SHMT2-207ENST00000553837 CLOCKO15516 846 aa12.19□□□□□ -0.46
SHMT2-207ENST00000553837 MTRF1O75570 445 aaKnown RBP12.19□□□□□ -0.46
SHMT2-207ENST00000553837 RPLP2P05387 115 aaKnown RBP12.19□□□□□ -0.46
SHMT2-207ENST00000553837 CST5P28325 142 aaPredicted RBP12.19□□□□□ -0.46
SHMT2-207ENST00000553837 ARSDP51689 593 aa12.19□□□□□ -0.46
SHMT2-207ENST00000553837 LRP8Q14114 963 aa12.19□□□□□ -0.46
SHMT2-207ENST00000553837 ZNF846Q147U1 533 aa12.19□□□□□ -0.46
SHMT2-207ENST00000553837 UGP2Q16851 508 aa12.19□□□□□ -0.46
SHMT2-207ENST00000553837 EML3Q32P44 896 aa12.19□□□□□ -0.46
SHMT2-207ENST00000553837 SAMD4BQ5PRF9 694 aaKnown RBP12.19□□□□□ -0.46
SHMT2-207ENST00000553837 VARS2Q5ST30 1063 aaKnown RBP12.19□□□□□ -0.46
SHMT2-207ENST00000553837 FBXL22Q6P050 247 aa12.19□□□□□ -0.46
SHMT2-207ENST00000553837 GLB1LQ6UWU2 654 aa12.19□□□□□ -0.46
SHMT2-207ENST00000553837 RPS27LQ71UM5 84 aaKnown RBP12.19□□□□□ -0.46
SHMT2-207ENST00000553837 TMCO5AQ8N6Q1 288 aa12.19□□□□□ -0.46
SHMT2-207ENST00000553837 PTCD2Q8WV60 388 aaKnown RBP12.19□□□□□ -0.46
SHMT2-207ENST00000553837 SEPT8Q92599 483 aa12.19□□□□□ -0.46
SHMT2-207ENST00000553837 CTRCQ99895 268 aa12.19□□□□□ -0.46
SHMT2-207ENST00000553837 C9orf16Q9BUW7 83 aa12.19□□□□□ -0.46
SHMT2-207ENST00000553837 NANOGQ9H9S0 305 aa12.19□□□□□ -0.46
SHMT2-207ENST00000553837 ARNT2Q9HBZ2 717 aa12.19□□□□□ -0.46
SHMT2-207ENST00000553837 RNF186Q9NXI6 227 aa12.19□□□□□ -0.46
SHMT2-207ENST00000553837 PKD2L2Q9NZM6 624 aa12.19□□□□□ -0.46
SHMT2-207ENST00000553837 CD300AQ9UGN4 299 aa12.19□□□□□ -0.46
SHMT2-207ENST00000553837 PSME2Q9UL46 239 aa12.19□□□□□ -0.46
SHMT2-207ENST00000553837 SLC27A5Q9Y2P5 690 aa12.19□□□□□ -0.46
SHMT2-207ENST00000553837 MIA3Q5JRA6 1907 aa12.18□□□□□ -0.46
SHMT2-207ENST00000553837 RNF103-CHMP3A0A140T963 221 aa12.18□□□□□ -0.46
SHMT2-207ENST00000553837 PRORSD1PA6NEY8 169 aa12.18□□□□□ -0.46
SHMT2-207ENST00000553837 OR51F1A6NGY5 319 aa12.18□□□□□ -0.46
SHMT2-207ENST00000553837 TRPC5OSA6NMA1 111 aa12.18□□□□□ -0.46
SHMT2-207ENST00000553837 DLGAP1O14490 977 aa12.18□□□□□ -0.46
SHMT2-207ENST00000553837 VNN2O95498 520 aa12.18□□□□□ -0.46
SHMT2-207ENST00000553837 HMBSP08397 361 aa12.18□□□□□ -0.46
SHMT2-207ENST00000553837 TM4SF4P48230 202 aa12.18□□□□□ -0.46
SHMT2-207ENST00000553837 KPNA1P52294 538 aaPredicted RBP12.18□□□□□ -0.46
SHMT2-207ENST00000553837 TUBA3CQ13748 450 aa12.18□□□□□ -0.46
SHMT2-207ENST00000553837 KCNJ8Q15842 424 aa12.18□□□□□ -0.46
SHMT2-207ENST00000553837 RAP1GAP2Q684P5 730 aa12.18□□□□□ -0.46
SHMT2-207ENST00000553837 RSPO2Q6UXX9 243 aaPredicted RBP12.18□□□□□ -0.46
SHMT2-207ENST00000553837 MIB1Q86YT6 1006 aa12.18□□□□□ -0.46
SHMT2-207ENST00000553837 CCNYL1Q8N7R7 359 aa12.18□□□□□ -0.46
SHMT2-207ENST00000553837 KDM1BQ8NB78 822 aa12.18□□□□□ -0.46
SHMT2-207ENST00000553837 OR13F1Q8NGS4 319 aa12.18□□□□□ -0.46
SHMT2-207ENST00000553837 OR2T34Q8NGX1 318 aa12.18□□□□□ -0.46
SHMT2-207ENST00000553837 OR2T3Q8NH03 318 aa12.18□□□□□ -0.46
SHMT2-207ENST00000553837 PABPC5Q96DU9 382 aaKnown RBP12.18□□□□□ -0.46
SHMT2-207ENST00000553837 C8orf48Q96LL4 319 aa12.18□□□□□ -0.46
SHMT2-207ENST00000553837 ALPK1Q96QP1 1244 aa12.18□□□□□ -0.46
SHMT2-207ENST00000553837 TMEM248Q9NWD8 314 aa12.18□□□□□ -0.46
SHMT2-207ENST00000553837 CROCCQ5TZA2 2017 aa12.18□□□□□ -0.46
SHMT2-207ENST00000553837 ZNF839A8K0R7 811 aa12.18□□□□□ -0.46
SHMT2-207ENST00000553837 KMOO15229 486 aa12.18□□□□□ -0.46
SHMT2-207ENST00000553837 HNRNPLP14866 589 aaKnown RBP eCLIP12.18□□□□□ -0.46
SHMT2-207ENST00000553837 CPB1P15086 417 aa12.18□□□□□ -0.46
SHMT2-207ENST00000553837 RHOQP17081 205 aa12.18□□□□□ -0.46
SHMT2-207ENST00000553837 HOXD10P28358 340 aa12.18□□□□□ -0.46
SHMT2-207ENST00000553837 GATMP50440 423 aa12.18□□□□□ -0.46
SHMT2-207ENST00000553837 ACLYP53396 1101 aa12.18□□□□□ -0.46
SHMT2-207ENST00000553837 C1QTNF8P60827 252 aa12.18□□□□□ -0.46
SHMT2-207ENST00000553837 FAM189BP81408 668 aa12.18□□□□□ -0.46
SHMT2-207ENST00000553837 ITKQ08881 620 aa12.18□□□□□ -0.46
SHMT2-207ENST00000553837 CSHL1Q14406 222 aa12.18□□□□□ -0.46
SHMT2-207ENST00000553837 NEDD8Q15843 81 aa12.18□□□□□ -0.46
SHMT2-207ENST00000553837 GK5Q6ZS86 529 aa12.18□□□□□ -0.46
SHMT2-207ENST00000553837 SLC24A5Q71RS6 500 aa12.18□□□□□ -0.46
SHMT2-207ENST00000553837 DCP1BQ8IZD4 617 aaKnown RBP12.18□□□□□ -0.46
SHMT2-207ENST00000553837 ARRDC2Q8TBH0 407 aa12.18□□□□□ -0.46
SHMT2-207ENST00000553837 RAB2BQ8WUD1 216 aa12.18□□□□□ -0.46
SHMT2-207ENST00000553837 ANKRD49Q8WVL7 239 aa12.18□□□□□ -0.46
SHMT2-207ENST00000553837 CANT1Q8WVQ1 401 aa12.18□□□□□ -0.46
SHMT2-207ENST00000553837 CYGBQ8WWM9 190 aa12.18□□□□□ -0.46
SHMT2-207ENST00000553837 HPS1Q92902 700 aa12.18□□□□□ -0.46
SHMT2-207ENST00000553837 NRBF2Q96F24 287 aa12.18□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 48.3 ms