RNA–Protein interactions for RNA: ENST00000553474.5

SHMT2-205, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2 BASIC

Gene SHMT2, Length 1,765 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-205ENST00000553474 UROSP10746 265 aa12.83□□□□□ -0.36
SHMT2-205ENST00000553474 PKMP14618 531 aaKnown RBP12.83□□□□□ -0.36
SHMT2-205ENST00000553474 PEX19P40855 299 aa12.83□□□□□ -0.36
SHMT2-205ENST00000553474 SCNN1BP51168 640 aa12.83□□□□□ -0.36
SHMT2-205ENST00000553474 TLR1Q15399 786 aa12.83□□□□□ -0.36
SHMT2-205ENST00000553474 USP41Q3LFD5 358 aa12.83□□□□□ -0.36
SHMT2-205ENST00000553474 FOXB2Q5VYV0 432 aa12.83□□□□□ -0.36
SHMT2-205ENST00000553474 FBXL19Q6PCT2 694 aa12.83□□□□□ -0.36
SHMT2-205ENST00000553474 PAQR3Q6TCH7 311 aa12.83□□□□□ -0.36
SHMT2-205ENST00000553474 OTOP2Q7RTS6 562 aa12.83□□□□□ -0.36
SHMT2-205ENST00000553474 FUNDC1Q8IVP5 155 aa12.83□□□□□ -0.36
SHMT2-205ENST00000553474 CFAP52Q8N1V2 620 aa12.83□□□□□ -0.36
SHMT2-205ENST00000553474 RYBPQ8N488 228 aaPredicted RBP12.83□□□□□ -0.36
SHMT2-205ENST00000553474 RNF148Q8N7C7 305 aa12.83□□□□□ -0.36
SHMT2-205ENST00000553474 PHC3Q8NDX5 983 aa12.83□□□□□ -0.36
SHMT2-205ENST00000553474 GIPC2Q8TF65 315 aa12.83□□□□□ -0.36
SHMT2-205ENST00000553474 EME1Q96AY2 570 aa12.83□□□□□ -0.36
SHMT2-205ENST00000553474 TRMT2BQ96GJ1 504 aaKnown RBP12.83□□□□□ -0.36
SHMT2-205ENST00000553474 PDLIM5Q96HC4 596 aaKnown RBP12.83□□□□□ -0.36
SHMT2-205ENST00000553474 BIRC8Q96P09 236 aa12.83□□□□□ -0.36
SHMT2-205ENST00000553474 OSBPL11Q9BXB4 747 aa12.83□□□□□ -0.36
SHMT2-205ENST00000553474 TRIM54Q9BYV2 358 aa12.83□□□□□ -0.36
SHMT2-205ENST00000553474 TRPM5Q9NZQ8 1165 aa12.83□□□□□ -0.36
SHMT2-205ENST00000553474 AFF4Q9UHB7 1163 aaKnown RBP12.83□□□□□ -0.36
SHMT2-205ENST00000553474 MED16Q9Y2X0 877 aa12.83□□□□□ -0.36
SHMT2-205ENST00000553474 COMMD3-BMI1R4GMX3 469 aa12.83□□□□□ -0.36
SHMT2-205ENST00000553474 SUPT3HB4E1H0 165 aa12.82□□□□□ -0.36
SHMT2-205ENST00000553474 SUPT3HO75486 399 aa12.82□□□□□ -0.36
SHMT2-205ENST00000553474 EEF1DP29692 281 aaKnown RBP12.82□□□□□ -0.36
SHMT2-205ENST00000553474 PTGER3P43115 390 aa12.82□□□□□ -0.36
SHMT2-205ENST00000553474 RPL5P46777 297 aaKnown RBP12.82□□□□□ -0.36
SHMT2-205ENST00000553474 CDH13P55290 713 aa12.82□□□□□ -0.36
SHMT2-205ENST00000553474 IL2P60568 153 aa12.82□□□□□ -0.36
SHMT2-205ENST00000553474 RPS6KA2Q15349 733 aa12.82□□□□□ -0.36
SHMT2-205ENST00000553474 TPGS2Q68CL5 300 aa12.82□□□□□ -0.36
SHMT2-205ENST00000553474 CERS6Q6ZMG9 384 aa12.82□□□□□ -0.36
SHMT2-205ENST00000553474 PRR23BQ6ZRT6 265 aa12.82□□□□□ -0.36
SHMT2-205ENST00000553474 RPS27LQ71UM5 84 aaKnown RBP12.82□□□□□ -0.36
SHMT2-205ENST00000553474 DENND1CQ8IV53 801 aa12.82□□□□□ -0.36
SHMT2-205ENST00000553474 HERC6Q8IVU3 1022 aa12.82□□□□□ -0.36
SHMT2-205ENST00000553474 PACRGLQ8N7B6 248 aa12.82□□□□□ -0.36
SHMT2-205ENST00000553474 MDGA1Q8NFP4 955 aa12.82□□□□□ -0.36
SHMT2-205ENST00000553474 OR2T34Q8NGX1 318 aa12.82□□□□□ -0.36
SHMT2-205ENST00000553474 OR2T3Q8NH03 318 aa12.82□□□□□ -0.36
SHMT2-205ENST00000553474 ZNF483Q8TF39 744 aaPredicted RBP12.82□□□□□ -0.36
SHMT2-205ENST00000553474 DDI1Q8WTU0 396 aa12.82□□□□□ -0.36
SHMT2-205ENST00000553474 FUBP1Q96AE4 644 aaKnown RBP12.82□□□□□ -0.36
SHMT2-205ENST00000553474 TUBGCP3Q96CW5 907 aa12.82□□□□□ -0.36
SHMT2-205ENST00000553474 B3GALT6Q96L58 329 aa12.82□□□□□ -0.36
SHMT2-205ENST00000553474 ZNF597Q96LX8 424 aa12.82□□□□□ -0.36
SHMT2-205ENST00000553474 C3orf30Q96M34 536 aa12.82□□□□□ -0.36
SHMT2-205ENST00000553474 PRICKLE1Q96MT3 831 aaPredicted RBP12.82□□□□□ -0.36
SHMT2-205ENST00000553474 SPON2Q9BUD6 331 aa12.82□□□□□ -0.36
SHMT2-205ENST00000553474 MRPS26Q9BYN8 205 aaKnown RBP12.82□□□□□ -0.36
SHMT2-205ENST00000553474 TRMT6Q9UJA5 497 aaKnown RBP12.82□□□□□ -0.36
SHMT2-205ENST00000553474 PCDHB1Q9Y5F3 818 aa12.82□□□□□ -0.36
SHMT2-205ENST00000553474 SPO11Q9Y5K1 396 aa12.82□□□□□ -0.36
SHMT2-205ENST00000553474 TNRC18O15417 2968 aaPredicted RBP12.82□□□□□ -0.36
SHMT2-205ENST00000553474 ATP6AP2A0A1C7CYW4 349 aa12.81□□□□□ -0.36
SHMT2-205ENST00000553474 TTC36A6NLP5 189 aa12.81□□□□□ -0.36
SHMT2-205ENST00000553474 STX7O15400 261 aaKnown RBP12.81□□□□□ -0.36
SHMT2-205ENST00000553474 COCHO43405 550 aa12.81□□□□□ -0.36
SHMT2-205ENST00000553474 ECI2O75521 394 aa12.81□□□□□ -0.36
SHMT2-205ENST00000553474 CRCPO75575 148 aa12.81□□□□□ -0.36
SHMT2-205ENST00000553474 ATP6AP2O75787 350 aa12.81□□□□□ -0.36
SHMT2-205ENST00000553474 RNASEH2AO75792 299 aaKnown RBP12.81□□□□□ -0.36
SHMT2-205ENST00000553474 STC2O76061 302 aa12.81□□□□□ -0.36
SHMT2-205ENST00000553474 SIX3O95343 332 aaPredicted RBP12.81□□□□□ -0.36
SHMT2-205ENST00000553474 F11P03951 625 aa12.81□□□□□ -0.36
SHMT2-205ENST00000553474 ZNF26P17031 533 aaPredicted RBP12.81□□□□□ -0.36
SHMT2-205ENST00000553474 TCN1P20061 433 aaPredicted RBP12.81□□□□□ -0.36
SHMT2-205ENST00000553474 FMO4P31512 558 aa12.81□□□□□ -0.36
SHMT2-205ENST00000553474 MSX2P35548 267 aaPredicted RBP12.81□□□□□ -0.36
SHMT2-205ENST00000553474 SLC7A2P52569 658 aa12.81□□□□□ -0.36
SHMT2-205ENST00000553474 RPS24P62847 133 aaKnown RBP12.81□□□□□ -0.36
SHMT2-205ENST00000553474 IKBKEQ14164 716 aa12.81□□□□□ -0.36
SHMT2-205ENST00000553474 CYTH1Q15438 398 aa12.81□□□□□ -0.36
SHMT2-205ENST00000553474 PTPRNQ16849 979 aa12.81□□□□□ -0.36
SHMT2-205ENST00000553474 SETMARQ53H47 684 aaPredicted RBP12.81□□□□□ -0.36
SHMT2-205ENST00000553474 C6orf10Q5SRN2 563 aa12.81□□□□□ -0.36
SHMT2-205ENST00000553474 IL23RQ5VWK5 629 aa12.81□□□□□ -0.36
SHMT2-205ENST00000553474 BLOC1S3Q6QNY0 202 aa12.81□□□□□ -0.36
SHMT2-205ENST00000553474 DDIASQ8IXT1 998 aa12.81□□□□□ -0.36
SHMT2-205ENST00000553474 OR56A4Q8NGH8 313 aa12.81□□□□□ -0.36
SHMT2-205ENST00000553474 TRPC4APQ8TEL6 797 aa12.81□□□□□ -0.36
SHMT2-205ENST00000553474 EXT2Q93063 718 aa12.81□□□□□ -0.36
SHMT2-205ENST00000553474 ATP6V1E2Q96A05 226 aa12.81□□□□□ -0.36
SHMT2-205ENST00000553474 VWCEQ96DN2 955 aa12.81□□□□□ -0.36
SHMT2-205ENST00000553474 BRINP2Q9C0B6 783 aa12.81□□□□□ -0.36
SHMT2-205ENST00000553474 VCX3AQ9NNX9 186 aa12.81□□□□□ -0.36
SHMT2-205ENST00000553474 RIC8BQ9NVN3 520 aa12.81□□□□□ -0.36
SHMT2-205ENST00000553474 RAI2Q9Y5P3 530 aa12.81□□□□□ -0.36
SHMT2-205ENST00000553474 ANAPC1Q9H1A4 1944 aa12.81□□□□□ -0.36
SHMT2-205ENST00000553474 A0A1W2PP18 115 aa12.81□□□□□ -0.36
SHMT2-205ENST00000553474 KANSL1LA0AUZ9 987 aa12.81□□□□□ -0.36
SHMT2-205ENST00000553474 HNRNPRO43390 633 aaKnown RBP12.81□□□□□ -0.36
SHMT2-205ENST00000553474 GJB3O75712 270 aa12.81□□□□□ -0.36
SHMT2-205ENST00000553474 UPP2O95045 317 aa12.81□□□□□ -0.36
SHMT2-205ENST00000553474 FAM58BPP0C7Q3 252 aa12.81□□□□□ -0.36
SHMT2-205ENST00000553474 PIRTP0C851 137 aa12.81□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 69.3 ms