RNA–Protein interactions for RNA: ENST00000553128.5

VPS29-211, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 449 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-211ENST00000553128 GFPT2O94808 682 aa12.75□□□□□ -0.37
VPS29-211ENST00000553128 UBXN7O94888 489 aa12.75□□□□□ -0.37
VPS29-211ENST00000553128 PGLSO95336 258 aa12.75□□□□□ -0.37
VPS29-211ENST00000553128 PEX11BO96011 259 aa12.75□□□□□ -0.37
VPS29-211ENST00000553128 PDHA1P08559 390 aa12.75□□□□□ -0.37
VPS29-211ENST00000553128 UNGP13051 313 aaPredicted RBP12.75□□□□□ -0.37
VPS29-211ENST00000553128 UCHL3P15374 230 aa12.75□□□□□ -0.37
VPS29-211ENST00000553128 HNRNPH3P31942 346 aaKnown RBP12.75□□□□□ -0.37
VPS29-211ENST00000553128 MAXP61244 160 aa12.75□□□□□ -0.37
VPS29-211ENST00000553128 PPP1CAP62136 330 aa12.75□□□□□ -0.37
VPS29-211ENST00000553128 CDR2Q01850 454 aa12.75□□□□□ -0.37
VPS29-211ENST00000553128 IL10RBQ08334 325 aa12.75□□□□□ -0.37
VPS29-211ENST00000553128 RFTN1Q14699 578 aaPredicted RBP12.75□□□□□ -0.37
VPS29-211ENST00000553128 KCNAB1Q14722 419 aa12.75□□□□□ -0.37
VPS29-211ENST00000553128 PLEKHN1Q494U1 663 aaPredicted RBP12.75□□□□□ -0.37
VPS29-211ENST00000553128 FAM92BQ6ZTR7 304 aa12.75□□□□□ -0.37
VPS29-211ENST00000553128 PPP1R3BQ86XI6 285 aa12.75□□□□□ -0.37
VPS29-211ENST00000553128 CISD2Q8N5K1 135 aaKnown RBP12.75□□□□□ -0.37
VPS29-211ENST00000553128 PIH1D2Q8WWB5 315 aa12.75□□□□□ -0.37
VPS29-211ENST00000553128 RSC1A1Q92681 617 aa12.75□□□□□ -0.37
VPS29-211ENST00000553128 PNPLA2Q96AD5 504 aa12.75□□□□□ -0.37
VPS29-211ENST00000553128 HERPUD2Q9BSE4 406 aa12.75□□□□□ -0.37
VPS29-211ENST00000553128 SELENOOQ9BVL4 669 aa12.75□□□□□ -0.37
VPS29-211ENST00000553128 RIOK2Q9BVS4 552 aaKnown RBP12.75□□□□□ -0.37
VPS29-211ENST00000553128 NDST4Q9H3R1 872 aa12.75□□□□□ -0.37
VPS29-211ENST00000553128 EPB41L1Q9H4G0 881 aa12.75□□□□□ -0.37
VPS29-211ENST00000553128 PCSK5Q92824 1860 aa12.74□□□□□ -0.37
VPS29-211ENST00000553128 HIVEP1P15822 2718 aa12.74□□□□□ -0.37
VPS29-211ENST00000553128 KIR2DS5A0A0G2JLQ3 304 aa12.74□□□□□ -0.37
VPS29-211ENST00000553128 A0A0G2JNG1 304 aa12.74□□□□□ -0.37
VPS29-211ENST00000553128 TCRBV5S1A1TA0A578 114 aa12.74□□□□□ -0.37
VPS29-211ENST00000553128 ANKUB1A6NFN9 424 aa12.74□□□□□ -0.37
VPS29-211ENST00000553128 KIR2DS3K7RE56 304 aa12.74□□□□□ -0.37
VPS29-211ENST00000553128 EEF2KO00418 725 aaKnown RBP12.74□□□□□ -0.37
VPS29-211ENST00000553128 ZNF185O15231 689 aa12.74□□□□□ -0.37
VPS29-211ENST00000553128 FOLR1P15328 257 aa12.74□□□□□ -0.37
VPS29-211ENST00000553128 ERCC2P18074 760 aa12.74□□□□□ -0.37
VPS29-211ENST00000553128 ZNF143P52747 638 aaPredicted RBP12.74□□□□□ -0.37
VPS29-211ENST00000553128 GSCP56915 257 aaPredicted RBP12.74□□□□□ -0.37
VPS29-211ENST00000553128 OGDHQ02218 1023 aa12.74□□□□□ -0.37
VPS29-211ENST00000553128 RAPSNQ13702 412 aa12.74□□□□□ -0.37
VPS29-211ENST00000553128 KIR2DS5Q14953 304 aa12.74□□□□□ -0.37
VPS29-211ENST00000553128 MAN2A1Q16706 1144 aa12.74□□□□□ -0.37
VPS29-211ENST00000553128 HSP90AA4PQ58FG1 418 aa12.74□□□□□ -0.37
VPS29-211ENST00000553128 ZRANB3Q5FWF4 1079 aa12.74□□□□□ -0.37
VPS29-211ENST00000553128 CACHD1Q5VU97 1274 aa12.74□□□□□ -0.37
VPS29-211ENST00000553128 CERS6Q6ZMG9 384 aa12.74□□□□□ -0.37
VPS29-211ENST00000553128 TMEM26Q6ZUK4 368 aa12.74□□□□□ -0.37
VPS29-211ENST00000553128 SYVN1Q86TM6 617 aa12.74□□□□□ -0.37
VPS29-211ENST00000553128 C3orf20Q8ND61 904 aa12.74□□□□□ -0.37
VPS29-211ENST00000553128 ADAMTS17Q8TE56 1095 aa12.74□□□□□ -0.37
VPS29-211ENST00000553128 KLHL6Q8WZ60 621 aa12.74□□□□□ -0.37
VPS29-211ENST00000553128 MCEEQ96PE7 176 aa12.74□□□□□ -0.37
VPS29-211ENST00000553128 NUDCD1Q96RS6 583 aa12.74□□□□□ -0.37
VPS29-211ENST00000553128 WDR24Q96S15 920 aa12.74□□□□□ -0.37
VPS29-211ENST00000553128 KCTD15Q96SI1 283 aaPredicted RBP12.74□□□□□ -0.37
VPS29-211ENST00000553128 STK33Q9BYT3 514 aa12.74□□□□□ -0.37
VPS29-211ENST00000553128 VPS16Q9H269 839 aa12.74□□□□□ -0.37
VPS29-211ENST00000553128 ADAM22Q9P0K1 906 aa12.74□□□□□ -0.37
VPS29-211ENST00000553128 ZNF624Q9P2J8 865 aaPredicted RBP12.74□□□□□ -0.37
VPS29-211ENST00000553128 AP4E1Q9UPM8 1137 aa12.74□□□□□ -0.37
VPS29-211ENST00000553128 PPIL1Q9Y3C6 166 aa12.74□□□□□ -0.37
VPS29-211ENST00000553128 SIGLEC16A6NMB1 481 aa12.73□□□□□ -0.37
VPS29-211ENST00000553128 TOX3O15405 576 aaPredicted RBP12.73□□□□□ -0.37
VPS29-211ENST00000553128 HNRNPRO43390 633 aaKnown RBP12.73□□□□□ -0.37
VPS29-211ENST00000553128 MT-ND3P03897 115 aa12.73□□□□□ -0.37
VPS29-211ENST00000553128 AMD1P17707 334 aa12.73□□□□□ -0.37
VPS29-211ENST00000553128 SLC19A1P41440 591 aa12.73□□□□□ -0.37
VPS29-211ENST00000553128 RENBPP51606 427 aa12.73□□□□□ -0.37
VPS29-211ENST00000553128 VWA3BQ502W6 1294 aa12.73□□□□□ -0.37
VPS29-211ENST00000553128 ZNF648Q5T619 568 aaPredicted RBP12.73□□□□□ -0.37
VPS29-211ENST00000553128 LCN10Q6JVE6 187 aa12.73□□□□□ -0.37
VPS29-211ENST00000553128 RFX8Q6ZV50 586 aa12.73□□□□□ -0.37
VPS29-211ENST00000553128 USP45Q70EL2 814 aa12.73□□□□□ -0.37
VPS29-211ENST00000553128 ZNF765Q7L2R6 523 aa12.73□□□□□ -0.37
VPS29-211ENST00000553128 PRSS42Q7Z5A4 293 aa12.73□□□□□ -0.37
VPS29-211ENST00000553128 ZNF677Q86XU0 584 aa12.73□□□□□ -0.37
VPS29-211ENST00000553128 SLC34A3Q8N130 599 aa12.73□□□□□ -0.37
VPS29-211ENST00000553128 EXD1Q8NHP7 514 aa12.73□□□□□ -0.37
VPS29-211ENST00000553128 MOCOSQ96EN8 888 aa12.73□□□□□ -0.37
VPS29-211ENST00000553128 PEBP4Q96S96 227 aa12.73□□□□□ -0.37
VPS29-211ENST00000553128 GPR87Q9BY21 358 aa12.73□□□□□ -0.37
VPS29-211ENST00000553128 DHX35Q9H5Z1 703 aaKnown RBP12.73□□□□□ -0.37
VPS29-211ENST00000553128 ARFGAP3Q9NP61 516 aa12.73□□□□□ -0.37
VPS29-211ENST00000553128 VPS18Q9P253 973 aa12.73□□□□□ -0.37
VPS29-211ENST00000553128 SIK3Q9Y2K2 1263 aa12.73□□□□□ -0.37
VPS29-211ENST00000553128 PCDHGB7Q9Y5F8 929 aa12.73□□□□□ -0.37
VPS29-211ENST00000553128 DNHD1Q96M86 4753 aa12.72□□□□□ -0.37
VPS29-211ENST00000553128 IGHV5-51A0A0C4DH38 117 aa12.72□□□□□ -0.37
VPS29-211ENST00000553128 A0A1W2PQ67 120 aa12.72□□□□□ -0.37
VPS29-211ENST00000553128 FADS2P1A8MWK0 482 aa12.72□□□□□ -0.37
VPS29-211ENST00000553128 PRKCSHP14314 528 aaPredicted RBP12.72□□□□□ -0.37
VPS29-211ENST00000553128 SLC2A4P14672 509 aa12.72□□□□□ -0.37
VPS29-211ENST00000553128 NELFEP18615 380 aaKnown RBP12.72□□□□□ -0.37
VPS29-211ENST00000553128 LPOP22079 712 aaPredicted RBP12.72□□□□□ -0.37
VPS29-211ENST00000553128 HTR7P34969 479 aa12.72□□□□□ -0.37
VPS29-211ENST00000553128 CAPZBP47756 277 aa12.72□□□□□ -0.37
VPS29-211ENST00000553128 KLK7P49862 253 aa12.72□□□□□ -0.37
VPS29-211ENST00000553128 STC1P52823 247 aa12.72□□□□□ -0.37
VPS29-211ENST00000553128 AIF1P55008 147 aa12.72□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms