RNA–Protein interactions for RNA: ENST00000550267.1

VPS29-208, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 810 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-208ENST00000550267 CDR2Q01850 454 aa10.4□□□□□ -0.74
VPS29-208ENST00000550267 FOXM1Q08050 763 aa10.4□□□□□ -0.74
VPS29-208ENST00000550267 NSUN2Q08J23 767 aaKnown RBP eCLIP10.4□□□□□ -0.74
VPS29-208ENST00000550267 NADK2Q4G0N4 442 aa10.4□□□□□ -0.74
VPS29-208ENST00000550267 VWA3BQ502W6 1294 aa10.4□□□□□ -0.74
VPS29-208ENST00000550267 PYCR3Q53H96 274 aa10.4□□□□□ -0.74
VPS29-208ENST00000550267 MIIPQ5JXC2 388 aa10.4□□□□□ -0.74
VPS29-208ENST00000550267 C6orf15Q6UXA7 325 aaPredicted RBP10.4□□□□□ -0.74
VPS29-208ENST00000550267 TSPAN33Q86UF1 283 aa10.4□□□□□ -0.74
VPS29-208ENST00000550267 ZNF677Q86XU0 584 aa10.4□□□□□ -0.74
VPS29-208ENST00000550267 ARHGAP12Q8IWW6 846 aa10.4□□□□□ -0.74
VPS29-208ENST00000550267 ZNF295-AS1Q8N0V1 137 aa10.4□□□□□ -0.74
VPS29-208ENST00000550267 TBC1D10AQ9BXI6 508 aa10.4□□□□□ -0.74
VPS29-208ENST00000550267 STK33Q9BYT3 514 aa10.4□□□□□ -0.74
VPS29-208ENST00000550267 TRIM55Q9BYV6 548 aa10.4□□□□□ -0.74
VPS29-208ENST00000550267 TWSG1Q9GZX9 223 aa10.4□□□□□ -0.74
VPS29-208ENST00000550267 RCOR3Q9P2K3 495 aaPredicted RBP10.4□□□□□ -0.74
VPS29-208ENST00000550267 SRPK3Q9UPE1 567 aa10.4□□□□□ -0.74
VPS29-208ENST00000550267 PCYT1BQ9Y5K3 369 aaPredicted RBP10.4□□□□□ -0.74
VPS29-208ENST00000550267 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP10.39□□□□□ -0.75
VPS29-208ENST00000550267 NPIPB15A6NHN6 443 aaPredicted RBP10.39□□□□□ -0.75
VPS29-208ENST00000550267 DFFAO00273 331 aa10.39□□□□□ -0.75
VPS29-208ENST00000550267 INPP4BO15327 924 aa10.39□□□□□ -0.75
VPS29-208ENST00000550267 HTRA2O43464 458 aaPredicted RBP10.39□□□□□ -0.75
VPS29-208ENST00000550267 GFPT2O94808 682 aa10.39□□□□□ -0.75
VPS29-208ENST00000550267 KIAA0754O94854 1291 aa10.39□□□□□ -0.75
VPS29-208ENST00000550267 CLDN1O95832 211 aa10.39□□□□□ -0.75
VPS29-208ENST00000550267 CYP2A6P11509 494 aaPredicted RBP10.39□□□□□ -0.75
VPS29-208ENST00000550267 CD33P20138 364 aa10.39□□□□□ -0.75
VPS29-208ENST00000550267 GSCP56915 257 aaPredicted RBP10.39□□□□□ -0.75
VPS29-208ENST00000550267 MRPL49Q13405 166 aaKnown RBP10.39□□□□□ -0.75
VPS29-208ENST00000550267 SEMA5AQ13591 1074 aa10.39□□□□□ -0.75
VPS29-208ENST00000550267 TPD52L1Q16890 204 aaPredicted RBP10.39□□□□□ -0.75
VPS29-208ENST00000550267 EIF2S3LQ2VIR3 472 aaKnown RBP10.39□□□□□ -0.75
VPS29-208ENST00000550267 HSP90AA4PQ58FG1 418 aa10.39□□□□□ -0.75
VPS29-208ENST00000550267 ARSJQ5FYB0 599 aaPredicted RBP10.39□□□□□ -0.75
VPS29-208ENST00000550267 MAMDC2Q7Z304 686 aaPredicted RBP10.39□□□□□ -0.75
VPS29-208ENST00000550267 GALNT13Q8IUC8 556 aa10.39□□□□□ -0.75
VPS29-208ENST00000550267 STAMBPL1Q96FJ0 436 aa10.39□□□□□ -0.75
VPS29-208ENST00000550267 PCDHB18PQ96TA0 734 aa10.39□□□□□ -0.75
VPS29-208ENST00000550267 ABCG8Q9H221 673 aa10.39□□□□□ -0.75
VPS29-208ENST00000550267 SARS2Q9NP81 518 aaKnown RBP10.39□□□□□ -0.75
VPS29-208ENST00000550267 IGSF5Q9NSI5 407 aa10.39□□□□□ -0.75
VPS29-208ENST00000550267 ZDHHC3Q9NYG2 299 aa10.39□□□□□ -0.75
VPS29-208ENST00000550267 ADAM22Q9P0K1 906 aa10.39□□□□□ -0.75
VPS29-208ENST00000550267 TBC1D29Q9UFV1 150 aa10.39□□□□□ -0.75
VPS29-208ENST00000550267 PRKAB1Q9Y478 270 aa10.39□□□□□ -0.75
VPS29-208ENST00000550267 ARHGEF17Q96PE2 2063 aaPredicted RBP10.38□□□□□ -0.75
VPS29-208ENST00000550267 A0A1W2PQ67 120 aa10.38□□□□□ -0.75
VPS29-208ENST00000550267 PIPSLA2A3N6 862 aa10.38□□□□□ -0.75
VPS29-208ENST00000550267 SIGLEC16A6NMB1 481 aa10.38□□□□□ -0.75
VPS29-208ENST00000550267 PSMD11O00231 422 aa10.38□□□□□ -0.75
VPS29-208ENST00000550267 EEF2KO00418 725 aaKnown RBP10.38□□□□□ -0.75
VPS29-208ENST00000550267 PES1O00541 588 aaKnown RBP10.38□□□□□ -0.75
VPS29-208ENST00000550267 CREG1O75629 220 aa10.38□□□□□ -0.75
VPS29-208ENST00000550267 ASMTLO95671 621 aa10.38□□□□□ -0.75
VPS29-208ENST00000550267 DDAH2O95865 285 aa10.38□□□□□ -0.75
VPS29-208ENST00000550267 FAM157BP0CG42 384 aa10.38□□□□□ -0.75
VPS29-208ENST00000550267 UNGP13051 313 aaPredicted RBP10.38□□□□□ -0.75
VPS29-208ENST00000550267 CTPS1P17812 591 aa10.38□□□□□ -0.75
VPS29-208ENST00000550267 ZNF143P52747 638 aaPredicted RBP10.38□□□□□ -0.75
VPS29-208ENST00000550267 EPHA4P54764 986 aa10.38□□□□□ -0.75
VPS29-208ENST00000550267 AIF1P55008 147 aa10.38□□□□□ -0.75
VPS29-208ENST00000550267 GFERP55789 205 aa10.38□□□□□ -0.75
VPS29-208ENST00000550267 DPTQ07507 201 aa10.38□□□□□ -0.75
VPS29-208ENST00000550267 IL10RBQ08334 325 aa10.38□□□□□ -0.75
VPS29-208ENST00000550267 SLC10A7Q0GE19 358 aa10.38□□□□□ -0.75
VPS29-208ENST00000550267 TRAF2Q12933 501 aa10.38□□□□□ -0.75
VPS29-208ENST00000550267 DNASE1L3Q13609 305 aa10.38□□□□□ -0.75
VPS29-208ENST00000550267 RFTN1Q14699 578 aaPredicted RBP10.38□□□□□ -0.75
VPS29-208ENST00000550267 CA9Q16790 459 aa10.38□□□□□ -0.75
VPS29-208ENST00000550267 PRR30Q53SZ7 412 aaPredicted RBP10.38□□□□□ -0.75
VPS29-208ENST00000550267 IYDQ6PHW0 289 aa10.38□□□□□ -0.75
VPS29-208ENST00000550267 ADAMTSL4Q6UY14 1074 aa10.38□□□□□ -0.75
VPS29-208ENST00000550267 CHST15Q7LFX5 561 aaPredicted RBP10.38□□□□□ -0.75
VPS29-208ENST00000550267 TECPR1Q7Z6L1 1165 aa10.38□□□□□ -0.75
VPS29-208ENST00000550267 RASGRP3Q8IV61 690 aa10.38□□□□□ -0.75
VPS29-208ENST00000550267 APLFQ8IW19 511 aaPredicted RBP10.38□□□□□ -0.75
VPS29-208ENST00000550267 TP53INP2Q8IXH6 220 aa10.38□□□□□ -0.75
VPS29-208ENST00000550267 NPWQ8N729 165 aa10.38□□□□□ -0.75
VPS29-208ENST00000550267 C3orf20Q8ND61 904 aa10.38□□□□□ -0.75
VPS29-208ENST00000550267 SCAMP4Q969E2 229 aa10.38□□□□□ -0.75
VPS29-208ENST00000550267 SH3KBP1Q96B97 665 aa10.38□□□□□ -0.75
VPS29-208ENST00000550267 ELMO2Q96JJ3 720 aa10.38□□□□□ -0.75
VPS29-208ENST00000550267 MCEEQ96PE7 176 aa10.38□□□□□ -0.75
VPS29-208ENST00000550267 PSKH2Q96QS6 385 aa10.38□□□□□ -0.75
VPS29-208ENST00000550267 AGAP2Q99490 1192 aa10.38□□□□□ -0.75
VPS29-208ENST00000550267 TUBGCP2Q9BSJ2 902 aa10.38□□□□□ -0.75
VPS29-208ENST00000550267 VPS16Q9H269 839 aa10.38□□□□□ -0.75
VPS29-208ENST00000550267 STN1Q9H668 368 aaKnown RBP10.38□□□□□ -0.75
VPS29-208ENST00000550267 DONSONQ9NYP3 566 aa10.38□□□□□ -0.75
VPS29-208ENST00000550267 CNOT8Q9UFF9 292 aaKnown RBP10.38□□□□□ -0.75
VPS29-208ENST00000550267 ZNHIT2Q9UHR6 403 aa10.38□□□□□ -0.75
VPS29-208ENST00000550267 KCND3Q9UK17 655 aa10.38□□□□□ -0.75
VPS29-208ENST00000550267 PHTF1Q9UMS5 762 aa10.38□□□□□ -0.75
VPS29-208ENST00000550267 AP4E1Q9UPM8 1137 aa10.38□□□□□ -0.75
VPS29-208ENST00000550267 KCNK6Q9Y257 313 aa10.38□□□□□ -0.75
VPS29-208ENST00000550267 MN1Q10571 1320 aaPredicted RBP10.37□□□□□ -0.75
VPS29-208ENST00000550267 NBASA2RRP1 2371 aa10.37□□□□□ -0.75
VPS29-208ENST00000550267 TCRBV5S1A1TA0A578 114 aa10.37□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms