RNA–Protein interactions for RNA: ENST00000549970.5

VPS29-207, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 818 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-207ENST00000549970 KATNAL2Q8IYT4 538 aa16.17■□□□□ 0.18
VPS29-207ENST00000549970 SFRP1Q8N474 314 aa16.17■□□□□ 0.18
VPS29-207ENST00000549970 USP7Q93009 1102 aa16.17■□□□□ 0.18
VPS29-207ENST00000549970 CCDC74BQ96LY2 380 aa16.17■□□□□ 0.18
VPS29-207ENST00000549970 SLC38A3Q99624 504 aa16.17■□□□□ 0.18
VPS29-207ENST00000549970 CARD9Q9H257 536 aa16.17■□□□□ 0.18
VPS29-207ENST00000549970 RMI1Q9H9A7 625 aa16.17■□□□□ 0.18
VPS29-207ENST00000549970 KLHL8Q9P2G9 620 aaPredicted RBP16.17■□□□□ 0.18
VPS29-207ENST00000549970 ATXN10Q9UBB4 475 aa16.17■□□□□ 0.18
VPS29-207ENST00000549970 TBC1D29Q9UFV1 150 aa16.17■□□□□ 0.18
VPS29-207ENST00000549970 SSUH2Q9Y2M2 353 aa16.17■□□□□ 0.18
VPS29-207ENST00000549970 BAHCC1Q9P281 2608 aa16.16■□□□□ 0.18
VPS29-207ENST00000549970 NVLO15381 856 aaKnown RBP16.16■□□□□ 0.18
VPS29-207ENST00000549970 GRID2O43424 1007 aa16.16■□□□□ 0.18
VPS29-207ENST00000549970 NUAK1O60285 661 aa16.16■□□□□ 0.18
VPS29-207ENST00000549970 SNX2O60749 519 aa16.16■□□□□ 0.18
VPS29-207ENST00000549970 SLC25A14O95258 325 aaPredicted RBP16.16■□□□□ 0.18
VPS29-207ENST00000549970 ZNF8P17098 575 aaPredicted RBP16.16■□□□□ 0.18
VPS29-207ENST00000549970 NFKB1P19838 968 aa16.16■□□□□ 0.18
VPS29-207ENST00000549970 MPSTP25325 297 aa16.16■□□□□ 0.18
VPS29-207ENST00000549970 CSF2RBP32927 897 aa16.16■□□□□ 0.18
VPS29-207ENST00000549970 CYLC1P35663 651 aaPredicted RBP16.16■□□□□ 0.18
VPS29-207ENST00000549970 FASLGP48023 281 aa16.16■□□□□ 0.18
VPS29-207ENST00000549970 DCDC1P59894 354 aa16.16■□□□□ 0.18
VPS29-207ENST00000549970 RHDQ02161 417 aa16.16■□□□□ 0.18
VPS29-207ENST00000549970 WASHC5Q12768 1159 aa16.16■□□□□ 0.18
VPS29-207ENST00000549970 TAF1BQ53T94 588 aaPredicted RBP16.16■□□□□ 0.18
VPS29-207ENST00000549970 C11orf63Q6NUN7 778 aa16.16■□□□□ 0.18
VPS29-207ENST00000549970 CCDC81Q6ZN84 652 aa16.16■□□□□ 0.18
VPS29-207ENST00000549970 DAAM2Q86T65 1068 aa16.16■□□□□ 0.18
VPS29-207ENST00000549970 RCOR2Q8IZ40 523 aa16.16■□□□□ 0.18
VPS29-207ENST00000549970 TRAM1L1Q8N609 369 aa16.16■□□□□ 0.18
VPS29-207ENST00000549970 KRT35Q92764 455 aa16.16■□□□□ 0.18
VPS29-207ENST00000549970 AHCYL2Q96HN2 611 aaKnown RBP16.16■□□□□ 0.18
VPS29-207ENST00000549970 ZSCAN5AQ9BUG6 496 aa16.16■□□□□ 0.18
VPS29-207ENST00000549970 OR2AG1Q9H205 316 aa16.16■□□□□ 0.18
VPS29-207ENST00000549970 LUC7LQ9NQ29 371 aaKnown RBP16.16■□□□□ 0.18
VPS29-207ENST00000549970 RAD18Q9NS91 495 aa16.16■□□□□ 0.18
VPS29-207ENST00000549970 FOXJ2Q9P0K8 574 aa16.16■□□□□ 0.18
VPS29-207ENST00000549970 TMEM9Q9P0T7 183 aa16.16■□□□□ 0.18
VPS29-207ENST00000549970 FAM153AQ9UHL3 310 aa16.16■□□□□ 0.18
VPS29-207ENST00000549970 ACSL6Q9UKU0 697 aa16.16■□□□□ 0.18
VPS29-207ENST00000549970 SPO11Q9Y5K1 396 aa16.16■□□□□ 0.18
VPS29-207ENST00000549970 SOWAHDA6NJG2 315 aa16.15■□□□□ 0.18
VPS29-207ENST00000549970 K7ENP7 123 aa16.15■□□□□ 0.18
VPS29-207ENST00000549970 ERVH48-1M5A8F1 160 aa16.15■□□□□ 0.18
VPS29-207ENST00000549970 TK2O00142 265 aa16.15■□□□□ 0.18
VPS29-207ENST00000549970 AURKAO14965 403 aa16.15■□□□□ 0.18
VPS29-207ENST00000549970 CCL4P13236 92 aa16.15■□□□□ 0.18
VPS29-207ENST00000549970 BPIP17213 487 aa16.15■□□□□ 0.18
VPS29-207ENST00000549970 LIMK2P53671 638 aa16.15■□□□□ 0.18
VPS29-207ENST00000549970 HHEXQ03014 270 aa16.15■□□□□ 0.18
VPS29-207ENST00000549970 CFHR1Q03591 330 aa16.15■□□□□ 0.18
VPS29-207ENST00000549970 NFATC2Q13469 925 aa16.15■□□□□ 0.18
VPS29-207ENST00000549970 NOMO1Q15155 1222 aa16.15■□□□□ 0.18
VPS29-207ENST00000549970 INO80CQ6PI98 192 aaPredicted RBP16.15■□□□□ 0.18
VPS29-207ENST00000549970 CRTC3Q6UUV7 619 aa16.15■□□□□ 0.18
VPS29-207ENST00000549970 PCSK4Q6UW60 755 aa16.15■□□□□ 0.18
VPS29-207ENST00000549970 PHYKPLQ8IUZ5 450 aa16.15■□□□□ 0.18
VPS29-207ENST00000549970 OR4D9Q8NGE8 314 aa16.15■□□□□ 0.18
VPS29-207ENST00000549970 GLYATL1Q969I3 302 aa16.15■□□□□ 0.18
VPS29-207ENST00000549970 RBM41Q96IZ5 413 aaKnown RBP16.15■□□□□ 0.18
VPS29-207ENST00000549970 CCNL2Q96S94 520 aaPredicted RBP16.15■□□□□ 0.18
VPS29-207ENST00000549970 BPIFA1Q9NP55 256 aa16.15■□□□□ 0.18
VPS29-207ENST00000549970 NFKBIL1Q9UBC1 381 aaPredicted RBP16.15■□□□□ 0.18
VPS29-207ENST00000549970 SBDSQ9Y3A5 250 aaKnown RBP eCLIP16.15■□□□□ 0.18
VPS29-207ENST00000549970 KALRNO60229 2985 aa16.15■□□□□ 0.18
VPS29-207ENST00000549970 C9orf172C9J069 976 aa16.14■□□□□ 0.17
VPS29-207ENST00000549970 HGSO14964 777 aaPredicted RBP16.14■□□□□ 0.17
VPS29-207ENST00000549970 MTSS1O43312 755 aa16.14■□□□□ 0.17
VPS29-207ENST00000549970 MTX2O75431 263 aa16.14■□□□□ 0.17
VPS29-207ENST00000549970 THRAP10827 490 aa16.14■□□□□ 0.17
VPS29-207ENST00000549970 LIPCP11150 499 aa16.14■□□□□ 0.17
VPS29-207ENST00000549970 TNNT3P45378 269 aaPredicted RBP16.14■□□□□ 0.17
VPS29-207ENST00000549970 ZNF75DP51815 510 aa16.14■□□□□ 0.17
VPS29-207ENST00000549970 WNT3AP56704 352 aa16.14■□□□□ 0.17
VPS29-207ENST00000549970 GPLD1P80108 840 aa16.14■□□□□ 0.17
VPS29-207ENST00000549970 SRSF6Q13247 344 aaKnown RBP16.14■□□□□ 0.17
VPS29-207ENST00000549970 PLA2G4EQ3MJ16 856 aa16.14■□□□□ 0.17
VPS29-207ENST00000549970 CHCHD2P9Q5T1J5 151 aaPredicted RBP16.14■□□□□ 0.17
VPS29-207ENST00000549970 KIAA1614Q5VZ46 1190 aa16.14■□□□□ 0.17
VPS29-207ENST00000549970 PDPK2PQ6A1A2 396 aa16.14■□□□□ 0.17
VPS29-207ENST00000549970 IYDQ6PHW0 289 aa16.14■□□□□ 0.17
VPS29-207ENST00000549970 KDELC1Q6UW63 502 aa16.14■□□□□ 0.17
VPS29-207ENST00000549970 PID1Q7Z2X4 250 aa16.14■□□□□ 0.17
VPS29-207ENST00000549970 ADGRG6Q86SQ4 1221 aa16.14■□□□□ 0.17
VPS29-207ENST00000549970 ZFAND4Q86XD8 727 aa16.14■□□□□ 0.17
VPS29-207ENST00000549970 ZNF567Q8N184 647 aa16.14■□□□□ 0.17
VPS29-207ENST00000549970 SLC25A41Q8N5S1 370 aa16.14■□□□□ 0.17
VPS29-207ENST00000549970 LSM14AQ8ND56 463 aaKnown RBP16.14■□□□□ 0.17
VPS29-207ENST00000549970 OR10G6Q8NH81 332 aa16.14■□□□□ 0.17
VPS29-207ENST00000549970 SNRNP27Q8WVK2 155 aaKnown RBP16.14■□□□□ 0.17
VPS29-207ENST00000549970 HTR3CQ8WXA8 447 aa16.14■□□□□ 0.17
VPS29-207ENST00000549970 QKIQ96PU8 341 aaKnown RBP eCLIP16.14■□□□□ 0.171e-6■■■■■ 30.1
VPS29-207ENST00000549970 SRPK1Q96SB4 655 aaKnown RBP16.14■□□□□ 0.17
VPS29-207ENST00000549970 HERPUD2Q9BSE4 406 aa16.14■□□□□ 0.17
VPS29-207ENST00000549970 HEMGNQ9BXL5 484 aa16.14■□□□□ 0.17
VPS29-207ENST00000549970 OSGEPL1Q9H4B0 414 aa16.14■□□□□ 0.17
VPS29-207ENST00000549970 STN1Q9H668 368 aaKnown RBP16.14■□□□□ 0.17
VPS29-207ENST00000549970 TRIM39Q9HCM9 518 aa16.14■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms